TCONS_00050104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050104
Unique NameTCONS_00050104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050104 ID=TCONS_00050104|Name=TCONS_00050104|organism=Clytia hemisphaerica|type=transcript|length=1048bp
TTAGCTAttacaattaaaaaagactAGATTCCAGTCTAAAAACAAATGGA
ACAAAAACCAAGATCTCGAAATTTCTGCCGATCACTGTtacaaaaattga
cgtcacaattttcaaaaacagtTTGAGACACTTGCACGACTTCATTGTga
ccaaagaaaaaaaaacatcaacacACAACATACACAAGACTAGTTTGATT
GCAAAGATTTATCagcaaaaaggaagaaaaatgaGGCCTGAATTGGGTGC
TCAAATTACGCTATCTTTTCTGGCGCATCTCAGCATATTCTTTGTGGCAA
ATCAGTTCCTAAACTCGTCAGAGTTTCCACGTTTCGATATCGCAATCAAC
ACAACACAAATTACAGACTCTAGCATCACCGTTTTCTGGAAGATCACCAA
AGATAGCCCAAACATTGAACTAATTAAAACTGCTTATGTCAGCATTTACA
GTTTAGAAATTGAAGATTTGACTTTCCGATCAAGACCTTTCAATAACATA
ACGTATGGCGAGTATCGGTTAACAAATTTACAACCCAAAATGAAATACAA
TATTTGCATTATTTTGCGGACCCTGAATGAAATGGAAGTGAGCAAATGTG
TTGGTGCAAAGACAGGAATCATATCAACAGGATCTCGTTTCAAGTTGTTA
CACGGGCTAACGTCGACAGGAGGTGGACACACCGGTCAAATCATTTTCTA
TTTGTTGCTTGTGGGAAGCGTCTTTTTCGGAGCATCATACTTTTCGTACC
AAATCTACAACAATGCACTGAATGGCGGTAGACGGAGACGAGGAGAGACT
GTTGGAAAAGAAATGAGCTTTGTTTCGTTCAGTGACATGTGCACTGAAGG
TGATGACGGAGATGATGATTTTGATGTCAATATTAGAAGaCAACAAATGG
AAGAACCACTCATCACCGAGGAAGATAAAGAAATCAACACTCTTTAGTGA
GTGAAGCCAGACTGAAGGACTCCGTGTCGCCAATGGACCTCTCGTTGCCT
AGTTATTTTGTAAGATATGTTTATTAGGGCTAAAAGTGTATTTACAGG
Run BLAST on NCBI

protein sequence of TCONS_00050104-protein

>TCONS_00050104-protein ID=TCONS_00050104-protein|Name=TCONS_00050104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MRPELGAQITLSFLAHLSIFFVANQFLNSSEFPRFDIAINTTQITDSSIT
VFWKITKDSPNIELIKTAYVSIYSLEIEDLTFRSRPFNNITYGEYRLTNL
QPKMKYNICIILRTLNEMEVSKCVGAKTGIISTGSRFKLLHGLTSTGGGH
TGQIIFYLLLVGSVFFGASYFSYQIYNNALNGGRRRRGETVGKEMSFVSF
SDMCTEGDDGDDDFDVNIRRQQMEEPLITEEDKEINTL
Run BLAST on NCBI

transcript from alignment at scaffold_167:1229898..1236668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050104 ID=TCONS_00050104|Name=TCONS_00050104|organism=Clytia hemisphaerica|type=transcript|length=6771bp|location=Sequence derived from alignment at scaffold_167:1229898..1236668- (Clytia hemisphaerica)
TTAGCTATTACAATTAAAAAAGACTAGATTCCAGTCTAAAAACAAATGGA
ACAAAAACCAAGATCTCGAAATTTCTGCCGATCACTGTTACAAAAATTGA
CGTCACAATTTTCAAAAACAGTTTGAGACACTTGCACGACTTCATTGTGA
CCAAAGAAAAAAAAACATCAACACACAACATACACAAGACTAGTTTGATT
GCAAAGATTTATCAGCAAAAAGGAAGAAAAATGAGGCCTGAATTGGGTGC
TCAAATTACGCTATCTTTTCTGGCGCATCTCAGCATATTCTTTGTGGCAA
ATCAGTTCCTAAACTCGTCAGGTAAGATAACACGAAATATTTCCTGTTTT
GGATAAGGAAAAAAAACTACTACTGCGACTAATCGTGTAGTCTTATTGTA
TTAGATCTTTATTATTCCATGGGATTATTGCATCTGAATGCAACCGCAGT
CTTTAAAAGTACTATTTAATTCGATTTCTTTTTTCTTGCAGAGTTTCCAC
GTTTCGATATCGCAATCAACACAACACAAATTACAGACTCTAGCATCACC
GTTTTCTGGAAGATCACCAAAGATAGCCCAAACATTGAACTAATTAAAAC
TGCTTATGTCAGCATTTACAGTTTAGAAATTGAAGATTTGACTTTCCGAT
CAAGACCTTTCAATAACATAACGTATGGCGAGTATCGGTTAACAAATTTA
CAACCCAAAATGAAATACAATATTTGCATTATTTTGCGGACCCTGAATGA
AATGGAAGTGAGCAAATGTGTTGGTGCAAAGACAGGAATCATATCAACAG
GTTTGACATATTTTATTTCTAGGATTTTCTGGACTAATCTATTCTGGAGT
GACCTGATTCTGGAGTAACCAGAAACTTTTATCAACCCTTATTTGAACTA
AATATGACAAAACAAGAATGGGTAAAATTGTGAAAGAGGGTGCTTGTAGT
AAACCACAGTAGTATTATTATACTACTGTGGTAGTACTACTGTGGTACTA
CTGTACTATATTAGTATTAGTATTATATGAGAATCAAAATGCAAACATAT
CATAAATCTTCCGGCTTTCTGCAAGTACTCCCAATCTACAAGTACACCTT
ACGCAGTTCACTTTTAAAAAGTCTGAGTCGATCAGTTTTAAATTCTTTTT
GTTCCGTCAATCAATCTGACGACTGATCAAAAAAATGCTTTTCCGTGTTT
TTGTTTTTCATATTTTGCGAAAGAAATCACGTTTTAAACCACTACCATTG
ATAGTTTCAAACAACTAACTCGATATTAAGCGAACTGCTTATACTCATCA
GTGCAGTCAAAACTTTTCTAGTGACAAAGGTTTATACCAATAAATTAGAC
CAACGCAGGAAGCTATAGTCAGGTTGATAGCAGTACTAAAATAATAGGCT
TCTGCTCATCCTCTAGAGCTTCTTTATAGGAGATATAGAGGCCTGTGATT
TCGACTACTAAAAGACACTTTTTTCTAATACTTGATTGTGACATATGAAT
CAAAGTAGACACGTCATAGAGATTTTAAAAACCCATTTGCGAAAACCCAA
AAGCGATTGCAATATAGTTTTCGAAATAGAGAGCAGGAAAAGGGATACTA
CTTCAGAGTAATATTTATTGTTTACTATATGAGAGAGAAGAGGTGGAAAA
ACGAAGAAGAAAATAAAACATTTTGATTAAAAAGTTGAAAGTTTGAGAGT
TGTTTGAAGAGTTTTTTCGTTGAAGAAACGTCATCGCTTGTCGAAGGGGG
GAGGTGGGCGAAACCCATCAAAAGACTCTCTCGATAAACTCCTTCTTTCC
TCTCTTTTGATTACGAAATCGTTTAAAATTGAAGAATGAAAAGTCTAGAA
CGGAGGCTGGTCGCAATGAAGTCAAAACTATTTTAACTTTAACTTCACCT
TTTCTGGTGGTCAGGAAATATTTCAACTTGCCTCACCTCACAGTACTTTT
TCCAGAATCATGTGATCAATTCTGAATCAACCAGAATCTTAGGATGTGGT
TTTCAATTTGAAATGACTCTTTGGAATAAAACTGTTTCTAATGTACTACT
ATAGCTTACATACAAGAAATGTCAATGCCTATAATGCTTATGCATACAGG
TGGAAAAAATTGTACTCCTGTTTAGACTAAAGCCATCGGCAAGTCACCAG
TCATCATGTCAATGCCTATATGAAACATTCTTACTCCCGTCTCGGCTCGA
GCCCTCAGTTAGGCTGCACACATCCCCTCTGATAAGTTTTGATATGTTAT
ATCAAAACTAATTTGGGGATGCATGCAGCCTAGCCCTCAGTAAGTTACTA
CTTCCCAATGCCCTCTGTGCTCATGTTCGCTAAACATAAACAACACAAGT
GTTATTTTTATTCTTATTCCATAGGATCTCGTTTCAAGTTGTTACACGGG
CTAACGTCGACAGGAGGTGGACACACCGGTCAAATCATTTTCTATTTGTT
GCTTGTGGGAAGCGTCTTTTTCGGAGCATCATACTTTTCGTACCAAATCT
ACAACAATGCACTGAATGGCGGTAGACGGAGACGAGGAGAGACTGTTGGA
AAAGAAATGAGCTTTGTTTCGTTCAGTGACATGTGCACTGAAGGTGATGA
CGGAGATGATGATTTTGATGTCAATATTAGAAGGTTTGTTTACGTGATAA
TATTCTATTATATTCATGGTATGTACCATTATTGCAATGTCTTTTGACAT
TACATCGCGGACCCTATAGCTGATTGGTTGTAAGTGACGTAAAATCACTC
AATACGCCACTTCTAACCAATCAACTGTTGGGTCCGTGGAAGACTAATTT
GTTCCACCCTCTACTAAAACCTTTTTACAAGAATAAAAACAGTGGTCGTC
AGAGTTCGCAAAATTTTTAGACGGAAAATGGTAAAAGAAATTGTCCACAA
AAAACCATCTTACGATTCCCAAAGAGAACTTGAAAGCCGAGATTATGGAT
TTCCCGTTTTTCTGATATCTAGAATAAGAGAAACAAAAATAGTCAAATGC
TTACTTCATTTTGAGGTTTTCTTTTTAAAGACAGGAGCTTACGTTTTAGC
GGTAATTGACACACCCATAAAGATTTGACTGGTCATGTAAAGGGTATTTA
AAACTTATTAAAAACCTATAAATATCTTCTCAAAAAAGAGCTTTAAAACA
ATCACCAGAAAATCAGGTTACGGTAACGGCCACATCGCGCTTGAAGGTTG
AAACGAAATAAGCTCTGTGGCACACTTTTAGTCCCTGTATATTCAAAGAA
CAGAAGACCCTCTTTTGATCTCCATGTAATGACTTCTTTCAATCTTTTCA
AGCAAGGATTTTAACTGCCAGCTTTCTGCCTACTCAAAAAATTGGAAAAG
CAGGGAACAAAAGCTATTCTCTTAGTCAATATTAGGAACTAACATCAACC
TATTAAGAAGCTTCATTTCGATTCGAAGCCATGTGCCTAGTGTACCTCGT
GTATAAGCAGATTTATGTATATAGCCTTTTAAGGAGGGCGAAGATCTAAA
GGAGGAGTTCCGACAGAAACGCAAAATCAATCAGAGTTAGTCAATCAAAA
ACTAACCGTCTCCATCGCAGAAAAACACAGAAACATACACACTCGCTACT
TCCAACTCAAGTGAACTTTCACCATAACGAGAATTATGTTCCGTTGGAGT
TTTTTTAAATCTCTCCAAAGAAAGTAAGTTACACAGCGTGACCTCTCGAT
AATAAAGTTACAAAACAAAATGGTGGTCAGCCAATAAAATTGCGATATTG
ACCTTCGACCTTGCGAATTACGTGATAGACCCTATGTGTGATCAAAGTGC
GTCGTTCATCCAAGTAAAAAACACTCATCCAAGTGAAAAAGAAATCAGTA
AGGTTTCCTCGTTAAAGAGATCCAAAGCCCACGAAAACATCTTTAGTACA
AGCATGTAGCAAGTACAACACAAAATACGAGTCTATATAAAAAATAAAAA
TACTTTCTTTTACAAAGTCTTAGATTAGAAGAATTACGTAAACTAGGGGG
AGAAGAAAAACCAAGAGATTTCAAAACCACAGAATCTCGATGATGACATT
TTTGGATGATCACTCACTTATGCTTTTCATACAAAACTCTGTTGAAATTG
TCTAGATAACTCTTAAGTAGAGCCCAGTAAAGCTATTGTACATTGCACTC
CCCATAGTTCGAACCTCTATAACTCGAAATGTTCCTTCAGTTAAAAATGT
CTTATAAACTAGCCTCAACAACTCGAAATTTCCTCAACTCGAATAAAGTT
GTGTACCCCGTGCTTGTTTGAGTTATAAAGCCCCCCTGTAGTATTTTTGT
TTGGGTGATAGAGGCAACAGAAATTTTCCCCATCATATTAGAGAACGTAT
TACTTCGACAAACCTTTAAGGATTATCTCTCTTTTTGGCGCTGTAACAAA
AAATCTCAGAGATACAAACATCATCACTCATGCATTATTCATCATACTGG
CGAAGAAATACTTCAGAAAAAAGAGGAAAAAAATAAAGATATAGATTTCA
GCCTTAAAATTTCACTATGTATATTATATTACATAGTATTGGAATATCAG
TCTCGAGTGGTCCCTAAAATAAGGACATCAAAAAAGTTTGTCTGAGTAAT
ACAACGCCAATCACTCCCATATTATTTTTCTTCCCAGCCCATCATCGTAT
CAATTCAAGTGATATCACCTTACACTCTATTCTCTTCTTTCTCTTATATT
TTCAGTAGAGCAGAAATCTTTCACTTGAAATCGAAAAAAATCTCCAGTTT
TTTCTCTCTTCCCCCCTCTCTCTTATTTTTATCTGGGAGTAGGAGGTAAG
ACGTATAAAATCTTGAACTGTTTTATCTGGTAAGTGGGCGGGTGACGTCA
CATAATCACAACAAGAGATGTCTCAATATTTTGATCCGATGAAAACACTC
CGTGTTTAGTCTGTTTCTTATTTAGGACATTACTCTTCTTGGCCTCAAAA
CATCTCTGCTTCACTGACTTTTATATATCCCTGGACCAAGCTATATCCGC
CATCTTTGATCGATATTTTTTGCATCGGTACCCGTAAAGAAGCCATTGCG
GTGTTATAAATTAACGTCTAACGGCGCTACATCATCAAAAGTTTTCGAGG
GAAAGTAGATCCATCGCCCTCGATGCATTTACACCGCTATTGAGTAGTCC
CATTAGGGTACCACTTTTCAAAAAAAAACTCCGATCAAAGATTTGGCTTG
GTCGGGATTGAGAAACTTGGTCCAGGTTATACAAAGGTCAGCCCTGCTTA
GGACAAAAGTAGCACTAAAGGACTCAGGACAAAACATTGAAGAAGTAAAC
TATAAAACAGAAAGGGTTGAAAAACAACGAATCTCGAAATATCTCTATTT
ATTCCAAATAAAATTTCTCTGATAACCGAATAGTTCCAATTCATATACGC
GCATTGCATCGCTTAGTTCTTACTTTCAAAGTTCAAAGACTCTTACCAAA
TAAGCCACCCTACCAAATACTGTTTACAAAAATCCAAAACATTAGCCTGT
CACCACACTTTACTCCGGTAAGCAAAAACAGCGCACAGTGTTTCAAAATG
GTTTCCGGGTCAATGGATCTATTTGCCTCGAAGGAGAAACTTTCTATGAT
AACGGTGTTCCTATGATAACAGCAGACTTAACCACACAACGTCAATGTAA
TTCAATAATCAAGTTGTGAAACAGAGGAAAGAAAGAATCCTTGTTCTTTA
CCATTGACAAGAAATTTTATCTCAGATAAGAAAATAAAACCTAAACATAA
ATAAATAAGAGTACCTTTTTACTGTGCTCCAAGTGCGGTTTATGAAACAA
GTTTGTTACTAAAGAAAATGAAAGAAGCATTTTAAGAAATTTCGATAAAG
CCAGTCCCCCGGTGCTAGGGGAAATTTTGCAAAAATATCGCGAAAGGAGC
GAGCGCGAAATTTTTTTCGATATTTCTCCATTTTCTAGGGCTAAAAACTG
CCATTTGTATGGTAAAAAGGGGAAAGAGGCGCTGAAATCAGTGTTGTGAA
AAGCCTTTTTGCGCCCCCCCCCTAAAAAAAAAACACGAAAAAAACACCAC
GCTAATGCACATATCCTCTTCCAAAGGTCAAGATGTCACAAGATGATCTG
TGAAAGTTGGCATTTTAAACTTTCTAGCAAGGACATTTGACTAAAACGGG
CTCTCTTGTTTCGTCTGAGGCCCAATTCAACTTGACGGAGAATATGTATC
CGTGTTTAACTTAACAATCTGGCAGGGAGGGAGCGCTATGGACCCGTATA
AGGAATACCAAAGAAGAAGGAAATTTCACAGCCGTAATGAGTAACCAGGA
CCACTGCACGCTAATGACGACTTACTATTGGTCCAAAATTTTGAAGATTT
TTGCGTCTATCCAACCGGCAGTCGTTACTAGAGCGCAACCAGTCCTGATT
ACCCAGGATTCATTTCGACTGTGAAATAGCATATACTATATCATTATTGA
AACTTCCAAAGCACAAGCTTGAAAATTAACCATACCTGTTCATTTTCAGT
TCATGCCTTTGTAAACGAACAATCAGGTGCATCCAGTCTAAAAGGAAAGT
CAAAGTTGTGAGTGATTGGTCTAGAAACTGCACTTTATTGAATTCATTTT
CTCTTTATTTAGACAACAAATGGAAGAACCACTCATCACCGAGGAAGATA
AAGAAATCAACACTCTTTAGTGAGTGAAGCCAGACTGAAGGACTCCGTGT
CGCCAATGGACCTCTCGTTGCCTAGTTATTTTGTAAGATATGTTTATTAG
GGCTAAAAGTGTATTTACAGG

Coding sequence (CDS) from alignment at scaffold_167:1229898..1236668-

>TCONS_00050104 ID=TCONS_00050104|Name=TCONS_00050104|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_167:1229898..1236668- (Clytia hemisphaerica)
ACAACAAATGGAAGAACCACTCATCACCGAGGAAGATAAAGAAATCAACA
CTCTTTAGGATCTCGTTTCAAGTTGTTACACGGGCTAACGTCGACAGGAG
GTGGACACACCGGTCAAATCATTTTCTATTTGTTGCTTGTGGGAAGCGTC
TTTTTCGGAGCATCATACTTTTCGTACCAAATCTACAACAATGCACTGAA
TGGCGGTAGACGGAGACGAGGAGAGACTGTTGGAAAAGAAATGAGCTTTG
TTTCGTTCAGTGACATGTGCACTGAAGGTGATGACGGAGATGATGATTTT
GATGTCAATATTAGAAGAGTTTCCACGTTTCGATATCGCAATCAACACAA
CACAAATTACAGACTCTAGCATCACCGTTTTCTGGAAGATCACCAAAGAT
AGCCCAAACATTGAACTAATTAAAACTGCTTATGTCAGCATTTACAGTTT
AGAAATTGAAGATTTGACTTTCCGATCAAGACCTTTCAATAACATAACGT
ATGGCGAGTATCGGTTAACAAATTTACAACCCAAAATGAAATACAATATT
TGCATTATTTTGCGGACCCTGAATGAAATGGAAGTGAGCAAATGTGTTGG
TGCAAAGACAGGAATCATATCAACAGATGAGGCCTGAATTGGGTGCTCAA
ATTACGCTATCTTTTCTGGCGCATCTCAGCATATTCTTTGTGGCAAATCA
GTTCCTAAACTCGTCAGACAACAAATGGAAGAACCACTCATCACCGAGGA
AGATAAAGAAATCAACACTCTTTAGGATCTCGTTTCAAGTTGTTACACGG
GCTAACGTCGACAGGAGGTGGACACACCGGTCAAATCATTTTCTATTTGT
TGCTTGTGGGAAGCGTCTTTTTCGGAGCATCATACTTTTCGTACCAAATC
TACAACAATGCACTGAATGGCGGTAGACGGAGACGAGGAGAGACTGTTGG
AAAAGAAATGAGCTTTGTTTCGTTCAGTGACATGTGCACTGAAGGTGATG
ACGGAGATGATGATTTTGATGTCAATATTAGAAGAGTTTCCACGTTTCGA
TATCGCAATCAACACAACACAAATTACAGACTCTAGCATCACCGTTTTCT
GGAAGATCACCAAAGATAGCCCAAACATTGAACTAATTAAAACTGCTTAT
GTCAGCATTTACAGTTTAGAAATTGAAGATTTGACTTTCCGATCAAGACC
TTTCAATAACATAACGTATGGCGAGTATCGGTTAACAAATTTACAACCCA
AAATGAAATACAATATTTGCATTATTTTGCGGACCCTGAATGAAATGGAA
GTGAGCAAATGTGTTGGTGCAAAGACAGGAATCATATCAACAGATGAGGC
CTGAATTGGGTGCTCAAATTACGCTATCTTTTCTGGCGCATCTCAGCATA
TTCTTTGTGGCAAATCAGTTCCTAAACTCGTCAGACAACAAATGGAAGAA
CCACTCATCACCGAGGAAGATAAAGAAATCAACACTCTTTAGGATCTCGT
TTCAAGTTGTTACACGGGCTAACGTCGACAGGAGGTGGACACACCGGTCA
AATCATTTTCTATTTGTTGCTTGTGGGAAGCGTCTTTTTCGGAGCATCAT
ACTTTTCGTACCAAATCTACAACAATGCACTGAATGGCGGTAGACGGAGA
CGAGGAGAGACTGTTGGAAAAGAAATGAGCTTTGTTTCGTTCAGTGACAT
GTGCACTGAAGGTGATGACGGAGATGATGATTTTGATGTCAATATTAGAA
GAGTTTCCACGTTTCGATATCGCAATCAACACAACACAAATTACAGACTC
TAGCATCACCGTTTTCTGGAAGATCACCAAAGATAGCCCAAACATTGAAC
TAATTAAAACTGCTTATGTCAGCATTTACAGTTTAGAAATTGAAGATTTG
ACTTTCCGATCAAGACCTTTCAATAACATAACGTATGGCGAGTATCGGTT
AACAAATTTACAACCCAAAATGAAATACAATATTTGCATTATTTTGCGGA
CCCTGAATGAAATGGAAGTGAGCAAATGTGTTGGTGCAAAGACAGGAATC
ATATCAACAGATGAGGCCTGAATTGGGTGCTCAAATTACGCTATCTTTTC
TGGCGCATCTCAGCATATTCTTTGTGGCAAATCAGTTCCTAAACTCGTCA
GACAACAAATGGAAGAACCACTCATCACCGAGGAAGATAAAGAAATCAAC
ACTCTTTAGGATCTCGTTTCAAGTTGTTACACGGGCTAACGTCGACAGGA
GGTGGACACACCGGTCAAATCATTTTCTATTTGTTGCTTGTGGGAAGCGT
CTTTTTCGGAGCATCATACTTTTCGTACCAAATCTACAACAATGCACTGA
ATGGCGGTAGACGGAGACGAGGAGAGACTGTTGGAAAAGAAATGAGCTTT
GTTTCGTTCAGTGACATGTGCACTGAAGGTGATGACGGAGATGATGATTT
TGATGTCAATATTAGAAGAGTTTCCACGTTTCGATATCGCAATCAACACA
ACACAAATTACAGACTCTAGCATCACCGTTTTCTGGAAGATCACCAAAGA
TAGCCCAAACATTGAACTAATTAAAACTGCTTATGTCAGCATTTACAGTT
TAGAAATTGAAGATTTGACTTTCCGATCAAGACCTTTCAATAACATAACG
TATGGCGAGTATCGGTTAACAAATTTACAACCCAAAATGAAATACAATAT
TTGCATTATTTTGCGGACCCTGAATGAAATGGAAGTGAGCAAATGTGTTG
GTGCAAAGACAGGAATCATATCAACAGATGAGGCCTGAATTGGGTGCTCA
AATTACGCTATCTTTTCTGGCGCATCTCAGCATATTCTTTGTGGCAAATC
AGTTCCTAAACTCGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031720XLOC_031720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050104-exon-scaffold_167-1575043694:1236348..1236668TCONS_00050104-exon-scaffold_167-1575043694:1236348..1236668Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1575043694:1235869..1236177TCONS_00050104-exon-scaffold_167-1575043694:1235869..1236177Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1575043694:1234036..1234294TCONS_00050104-exon-scaffold_167-1575043694:1234036..1234294Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1575043694:1229898..1230056TCONS_00050104-exon-scaffold_167-1575043694:1229898..1230056Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1510915933:1236348..1236668TCONS_00050104-exon-scaffold_167-1510915933:1236348..1236668Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1510915933:1235869..1236177TCONS_00050104-exon-scaffold_167-1510915933:1235869..1236177Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1510915933:1234036..1234294TCONS_00050104-exon-scaffold_167-1510915933:1234036..1234294Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1510915933:1229898..1230056TCONS_00050104-exon-scaffold_167-1510915933:1229898..1230056Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1491911889:1236348..1236668TCONS_00050104-exon-scaffold_167-1491911889:1236348..1236668Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1491911889:1235869..1236177TCONS_00050104-exon-scaffold_167-1491911889:1235869..1236177Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1491911889:1234036..1234294TCONS_00050104-exon-scaffold_167-1491911889:1234036..1234294Clytia hemisphaericaexon
TCONS_00050104-exon-scaffold_167-1491911889:1229898..1230056TCONS_00050104-exon-scaffold_167-1491911889:1229898..1230056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050104-proteinTCONS_00050104-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1229898..1236668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.23939	0.0936825	0.741321	0.405555	0.924205	1.1706	0.356334	0.220689	0.471252	0.450593	1.06867	0.876178	1.9209	2.44794	1.07929	0.911017	1.25862	1.92854	1.43095	0.83756	1.16362	1.76316	230.906	98.4605	0.405875	0.309401	0.891744	0.812909
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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