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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050075 ID=TCONS_00050075|Name=TCONS_00050075|organism=Clytia hemisphaerica|type=transcript|length=669bp
TCAGCCCATCGAGCGTGTGCAGCGTAAATTCAACCCACTGCGGATcccac
aaaaacttcaaaaagatTTACCTTTCAAATCGAAACCGAAAgatcaaaag
aaacaaaagaacaaaacataTCTACAGAAACGAGCTGTTGTTATGGAAAC
CGACGAAAAGAAGGCTGTACGTTTAATGAAAGGTATATTCGCAGCCAACC
GTGATAAACTTCAGAAAGAGAAGGTTAAACGGCACGAACAGCACgagaaa
ttcatgaaaaaagtcaaagaatCCGAAGGAAAACGTGATCAACGGATCAA
AGAACAACGCCGCAAAGTGTTCCGTATTCTCGGACAAGAACAAAAGCGGA
AAGAGAAGGCTGCAATGAGAAGTAAGAGGTGATCAAACGAAAGTGTCCCG
GCGTTCTTGGAAAGGGATAACTGCGGAATAGAGTAACTCCGGGTAACGGA
AAATGCGGAAAGAACCAGATCTAAGGTgaaatctttcttttattttttag
gaaattttttttatgataacCATGCAAATTATTTTGTATACTGACATTAA
AGAAATCCACTGAAGACTAATGGCTCTTGTTAatgattttctcaaatatt
cTGATTTGATATTTTATACTTCCCACGCCTTTTTTAGATCTATCTGTATG
TCACCATCAAACTTCTAAA Run BLAST on NCBI protein sequence of TCONS_00050075-protein >TCONS_00050075-protein ID=TCONS_00050075-protein|Name=TCONS_00050075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
QPIERVQRKFNPLRIPQKLQKDLPFKSKPKDQKKQKNKTYLQKRAVVMET
DEKKAVRLMKGIFAANRDKLQKEKVKRHEQHEKFMKKVKESEGKRDQRIK
EQRRKVFRILGQEQKRKEKAAMRSKR Run BLAST on NCBI transcript from alignment at scaffold_167:847199..849031- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050075 ID=TCONS_00050075|Name=TCONS_00050075|organism=Clytia hemisphaerica|type=transcript|length=1833bp|location=Sequence derived from alignment at scaffold_167:847199..849031- (Clytia hemisphaerica)
TCAGCCCATCGAGCGTGTGCAGCGTAAATTCAACCCACTGCGGATCCCAC
AAAAACTTCAAAAAGATTTACCTTTCAAATCGAAACCGAAAGATCAAAAG
AAACAAAAGAACAAAACATATCTACAGAAACGAGCTGTTGTTATGGAAAC
CGACGAAAAGAAGGTTTGTTACGTCATTTTTAGTCTCGATTGGACTTTGG
ATTTTGGGTTTGTGTGATTCTTTTGTCTGCACAATCACTCACTCAAAAAC
TTAACTTGAACAAATCTTCTTAACCTCAAGCTTCTTTTGTCCCAAAGGTG
GACACATTGTTTTCTTAACAGCAAGCGTTTCCCAAAAGTGGACACATATT
GTTTTCCTCCGGAAAAGCTTTTGTTTTAAATTATCATGGGGCAATAATAC
AAACCAAAAATGGTCATTTTAATATTAGGGGTTCGACAACCTCAGGAGCA
CTTGACTTTCAAGTGTTTAGTTTCGTCCGTCAAAGCTATTGGCACATCAG
GGCTTGTCCCTTTGGACAGGGAAATAACCTCTCGTCCGTGAAGGGAATTT
TCGATTGAGAGCAATGATAATGATGATGAGATATTGGAAAACTATTTACT
TCAACACAAACACAAACACAAGAAAGGATTTTTTATTTAATCATACAAAT
ACAAACCCCCTGCTTTTTCATGTCTCTAAAGAAATATCATTTGATCACTA
ACAAAACATTTTTATAATGACATAGAGATGGGGGAATCACCCGAAGGGAC
GAGCTTGTTCTCCTTCTGTCCCATGTTTTAATACCTAGTTTCTGTATCGG
AGGATATCGAGGGCGAAGGTAAGTGAAATTGATACAAAACAAAGTCGATA
GTTGATGTACGGCTCTATATCGCCTTTGCTCACCTAAACAGACGACGATA
TTTTGGTGTTTTTACCGTCGTCGAGCAAAGTGGACGGTGATTTTGGAGGC
ATGTCAACTTTGCTTTATTCCGTCTTCCCTCGATTTATCTCGAATATATA
AACTCGCTAATTTTGCGTTTACTCCTCTTGCCCGTAACTACAAATACTGT
CCCAAAATTTAAAGCCTACTATTAATTTATGTAACAATGTATCGATTATA
TGGAGAGCATTCGTCAAAATATATTTAAAAATACAAGTAGAGCCGGCTAT
TGGGTAGAAGTCGAGTTTGATTGAAAAGTTTCAAAATTCCGACTGACTGT
TGTTTCTAAATTACAGACTTTACTTTATTTAACATTACANTTGAAAAGTT
TCAAAACTCCGACTGACTGTCGTTTCTAAATTACAGACTTTACTTTATTT
AACATTACACGTGTCCTTCTTTCATAGGCTGTACGTTTAATGAAAGGTAT
ATTCGCAGCCAACCGTGATAAACTTCAGAAAGAGAAGGTTAAACGGCACG
AACAGCACGAGAAATTCATGAAAAAAGTCAAAGAATCCGAAGGAAAACGT
GATCAACGGATCAAAGAACAACGCCGCAAAGTGTTCCGTATTCTCGGACA
AGAACAAAAGCGGAAAGAGAAGGCTGCAATGAGAAGTAAGAGGTGATCAA
ACGAAAGTGTCCCGGCGTTCTTGGAAAGGGATAACTGCGGAATAGAGTAA
CTCCGGGTAACGGAAAATGCGGAAAGAACCAGATCTAAGGTGAAATCTTT
CTTTTATTTTTTAGGAAATTTTTTTTATGATAACCATGCAAATTATTTTG
TATACTGACATTAAAGAAATCCACTGAAGACTAATGGCTCTTGTTAATGA
TTTTCTCAAATATTCTGATTTGATATTTTATACTTCCCACGCCTTTTTTA
GATCTATCTGTATGTCACCATCAAACTTCTAAA Coding sequence (CDS) from alignment at scaffold_167:847199..849031- >TCONS_00050075 ID=TCONS_00050075|Name=TCONS_00050075|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_167:847199..849031- (Clytia hemisphaerica)
GCTGTACGTTTAATGAAAGGTATATTCGCAGCCAACCGTGATAAACTTCA
GAAAGAGAAGGTTAAACGGCACGAACAGCACGAGAAATTCATGAAAAAAG
TCAAAGAATCCGAAGGAAAACGTGATCAACGGATCAAAGAACAACGCCGC
AAAGTGTTCCGTATTCTCGGACAAGAACAAAAGCGGAAAGAGAAGGCTGC
AATGAGAAGTAAGAGGTGACAGCCCATCGAGCGTGTGCAGCGTAAATTCA
ACCCACTGCGGATCCCACAAAAACTTCAAAAAGATTTACCTTTCAAATCG
AAACCGAAAGATCAAAAGAAACAAAAGAACAAAACATATCTACAGAAACG
AGCTGTTGTTATGGAAACCGACGAAAAGAAGGCTGTACGTTTAATGAAAG
GTATATTCGCAGCCAACCGTGATAAACTTCAGAAAGAGAAGGTTAAACGG
CACGAACAGCACGAGAAATTCATGAAAAAAGTCAAAGAATCCGAAGGAAA
ACGTGATCAACGGATCAAAGAACAACGCCGCAAAGTGTTCCGTATTCTCG
GACAAGAACAAAAGCGGAAAGAGAAGGCTGCAATGAGAAGTAAGAGGTGA
CAGCCCATCGAGCGTGTGCAGCGTAAATTCAACCCACTGCGGATCCCACA
AAAACTTCAAAAAGATTTACCTTTCAAATCGAAACCGAAAGATCAAAAGA
AACAAAAGAACAAAACATATCTACAGAAACGAGCTGTTGTTATGGAAACC
GACGAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050075-exon-scaffold_167-1575043694:848869..849031 | TCONS_00050075-exon-scaffold_167-1575043694:848869..849031 | Clytia hemisphaerica | exon |
| TCONS_00050075-exon-scaffold_167-1575043694:847199..847704 | TCONS_00050075-exon-scaffold_167-1575043694:847199..847704 | Clytia hemisphaerica | exon |
| TCONS_00050075-exon-scaffold_167-1510915933:848869..849031 | TCONS_00050075-exon-scaffold_167-1510915933:848869..849031 | Clytia hemisphaerica | exon |
| TCONS_00050075-exon-scaffold_167-1510915933:847199..847704 | TCONS_00050075-exon-scaffold_167-1510915933:847199..847704 | Clytia hemisphaerica | exon |
| TCONS_00050075-exon-scaffold_167-1491911889:848869..849031 | TCONS_00050075-exon-scaffold_167-1491911889:848869..849031 | Clytia hemisphaerica | exon |
| TCONS_00050075-exon-scaffold_167-1491911889:847199..847704 | TCONS_00050075-exon-scaffold_167-1491911889:847199..847704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:847199..849031 - |
Blast
The following BLAST results are available for this feature:
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