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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050071 ID=TCONS_00050071|Name=TCONS_00050071|organism=Clytia hemisphaerica|type=transcript|length=6487bpRun BLAST on NCBI transcript from alignment at scaffold_167:766941..813278- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050071 ID=TCONS_00050071|Name=TCONS_00050071|organism=Clytia hemisphaerica|type=transcript|length=46338bp|location=Sequence derived from alignment at scaffold_167:766941..813278- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050071 vs. Swiss-Prot (Human)
Match: ARP8 (Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2) HSP 1 Score: 461.84 bits (1187), Expect = 5.588e-143 Identity = 251/613 (40.95%), Postives = 366/613 (59.71%), Query Frame = 1
Query: 220 ERPVIA----EPVVEHIQSTAIVVIHPGSSNLIIGRATDHAPRFMPHVIARKITNDQFHPLRVNP-LRRPGCNYEETDEKRKFGLKSTKSLIQSVRINGGYRKPRVSSNEVSAYNQNVYPTPSENDDSTESHWTDVSHMPDFVIGEEALNLQSNAPFHCRWPIKHGQLNLHDGVGGTPSALAEDIVTLWGNAIETLLNIPIGDLSFYRAVLLVPDNFNRSHVKLLVDLILNRLNFSCVIACQESVCGAFGSGLPSACVVDCGAQKTNICCVEDGLSLATTRLTLNYGGNDITRCFYNLLLKSNFPYQTLDFDDPMDIQLLQELKETYCHLSMDIPSGHVHEFQVMRPDQPTMMYKIRLGDEPILAPSAMFVPDLFGIVNERLIETFPEVQDHDSEDLTDDRYLLEKRDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIALTTSVLPPTNQQLHSKLEDI-----------------------RLDGMPIDEAIAYSIEQ-------CSNS-ETKRKMYSTILLIGGGLNFKGADNFLLKRVQARLPAHFNYLKEQMEVINRPKENDPRTAGWKGGGVLSILDSSQELWISRKEWNQYGVRILRERCAFQW 1950
+RP++ E + E IQS I+VIHPGS+ L IGRATD P +PHVIAR+ Q PL + L R G N E++E+R+ GLK I S +++ G R+ VS + +YN+ + P+ D + + WT+ SH P++++GEEAL + ++ WPI+ GQLN+H G GG+ +A+ DI +W +AI+ L IP+ DL +YR +LL+PD +N+ HVK LV++IL ++ FS ++ QESVC +GSGL S C+VD G QKT++CCVEDG+S TRL L YGG+D++RCFY L+ ++ FPY+ + MD LLQ LKET+CHL DI HEFQ+ PD P ++Y+ RLGDE + AP A+F P FGIV +++ T D ED D+ YLL + + + K T++ K + + + +S LP ++LHS+ D+ R + + E A +++ C +S +TK+KMYS+IL++GGGL F A FL R+ ++P F + E ++VI RPK+ DPR WKGG VL+ LD++QELWI ++EW ++GVR+LRER AF W
Sbjct: 27 KRPIVPALVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARR-HKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQARSYNKQM--RPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMT-TLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGD--------LRGQSSDLP---ERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW 624 The following BLAST results are available for this feature:
BLAST of TCONS_00050071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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