TCONS_00050057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050057
Unique NameTCONS_00050057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050057 ID=TCONS_00050057|Name=TCONS_00050057|organism=Clytia hemisphaerica|type=transcript|length=2519bp
CTAAGCCATAtagttcattttcagatatgttATAATTCATAATCATAATA
TTTAATGGTGAATATTGGAAAAATTGGTggcaaaaattaaataataacaG
CTCACTTTTCAACATATATTTAGTgatatattgaaaattatttaaagtga
AATATATATTGAAAATATCAATTGAAACGAAAATGGCAACAACATCAACA
GCTCAATCATCAGTCACTGTCCAAGAAGaggacgaagaagaaaatgatga
aGTGCCAACTTTGAGACTGACAATgccaaaaaatgataaaaaagtgaAAT
GGGGAGAGAGTGTGGTAGACAATGAAAATATGggcaaaaaatcttcaaaa
tGTTGTTGTATATATAAGAAGCCAAGGATGTTTGGAGAGTCCTCATCAGA
GGATGACTCGAGTGATGAAGAAAACGATGACAAATGTAAAGGACCAAAAG
ATTAtcataaaaattctaaaaagaaaaagaagaaagcaaAATCAGCGTGT
AACTCAAATGATTGCAATACTTGTGATTGATGGATAGAAGACAAACTGTA
TGGACAAATAAGTTTTCCAGCTGAAAATAGTCTGGTTAATATCTTAAATT
CATACAGAAGATTTTGGTGAACaaaaatatctaattaaaaaaatagaTCA
ATATCCATGAGGAGAATTCACATGCCATAGTTTGTACTACGTAACCCGTT
TATGGGGTGCATTAGCACGCACATTTAAGCCTCAAGTCATTAGTACTGGA
AGGACTCAGAGCACAGTCAGGCAAATGGTTTAAAGTTTATCTAATAAtgt
aaatagttttataatatcataattttatttaatactttGTAGTGTTTTCT
TTCTAAGACCTATAATAAACATGCCTCAAGTCATAAAAACGTTACTGCAT
AGGGTGTTGCTTGCTAATTGAGAAGCTTTAGAGGacggaaattaattttt
tttctaaattcagATTTGTGTAGGTGGTGCAGATTTTTAACGCAAAGTAA
ATATCTATTGGTAAcattaaaagataattacttCGTAACAAAATTGTGCT
GTCCTACACAATTTTTCCGACACCCCCTGAGAATGCTACTGTAAACTATA
ATACAATCATTTCCATATTCTGTTTTAATTTAGCAATATTGCAAGTTTTT
ATTATTGAAATCCTGCATTTTCCAGTTAATTTTGATTGCTTTCATGTAGT
GTTCatattttttagtgaaaataataacaaaaaagaagaaattacaaaac
aacaacaaaaatataaatatgGAATATTGAAATTTCACAATTGGAAAGTA
TAAATGGATGATTTATTTACGAAGAAAAGTAAAGAAGAATCATATTACAA
ACTTTTAAATTGTGTTCCAACATCTAATAAAGAACAAATTACTGCTGAAT
ATCGTGTCTTGGCAAAACAATATCATCCTGATAAAAATAAAGATACTGGT
GATGAGAATGCAGGAAAGGAGGGAAACAAAGATTCATCAGACACGATAAC
TAAAGCTTATAAAGTATTGAGTGATGATTTGCTACGTAAAGATTATGACA
AATGGATGAATTCTGGTTTATGTGTTACTTATGAGAAATGGACTGAACTT
TCTAAAGCAACTCACACCTCACTCCACTGGGGATGTATGAAAAATGAACA
ACTCGCACTGACTAAAGatgataaaaatgaaaaagacaaGCTTTCTGGAT
CTTCAtcttcaaaaaatgctgactcaGCTTGTGAAAATTCCACCACCAAC
AACAGTAGTGCATTGAACCCTTCCATGGTATCAACTTTGGCCAATTCATC
ATCAAACAGTGGGATGAAAAGACCAACAGGTGGCTTCAACATTGGCAGTA
GAAGAAGCAAGTTCcggaaatatgaaatttgattttctattACCATTTGG
TCGAGTTGCAGGAGGCTGTGTGGCCCATTCTAGCAACTATTGACGTTTCA
AAGCGGCCCGTCAGCatcttgaactgactacccaattcccctcacatggc
aagGGTTGATCTGGGCGAAGATTTGTTTACTTAACAATtaaaccgctgcg
agtgggattcgaacctcATTCGCATGTGCAGTAACCATTGATCACGTGTC
AAACATGAAACATAATAGAAACAGTCCTTCATCTTgtgcaatttttgttt
ttgtttcacaataatgtttttgtagcATCAAGGAACTTAGTagcattgag
aaaaaaagtttttgggccaatttgagcccaaaaaatgccaaaaaatgacT
TTGGACTTTGTTAAAAATCTGTTCAAGAAGTTATGGCACCAACTTgctaa
attttaaattattcagtttttgtttttacattgCCTTCATTAAACTTtca
ttattcgttttataaacaggtaggtccataaaagtatcgcttgtttcaTT
ATAGCCAACTGCAGAGTTCAAAGCATGTTCTTCAACTTTCTTCCTTGTAC
AATCTATATTTATTCCCTCATTCtttgaattgaaatttgaaacttgATGC
TGGATTTTACtcaaagttt
Run BLAST on NCBI

transcript from alignment at scaffold_167:680349..684840-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050057 ID=TCONS_00050057|Name=TCONS_00050057|organism=Clytia hemisphaerica|type=transcript|length=4492bp|location=Sequence derived from alignment at scaffold_167:680349..684840- (Clytia hemisphaerica)
CTAAGCCATATAGTTCATTTTCAGATATGTTATAATTCATAATCATAATA
TTTAATGGTGAATATTGGAAAAATTGGTGGCAAAAATTAAATAATAACAG
CTCACTTTTCAACATATATTTAGTGATATATTGAAAATTATTTAAAGTGA
AATATATATTGAAAATATCAATTGAAACGAAAATGGCAACAACATCAACA
GCTCAATCATCAGTCACTGTCCAAGAAGAGGACGAAGAAGAAAATGATGA
AGTTAGTGTATCAATTGTTGTTTTCTTTACTTAATGAATCTATAGTATCC
ATCCCTCTTTAACACCCATCTCTGTAATTTTACTTAGGGTAGCATTAGTC
TTCGTATTTCCTCATCAAAAAGCAATTGTCAAAGTTGTTTTTGAGTTTCA
CACAGTTTCACATTCCATCTATTTTCACTATTTTAGGTGCCAACTTTGAG
ACTGACAATGCCAAAAAATGATAAAAAAGTGAAATGGGGAGAGAGTGTGG
TAGACAATGAAAATATGGGCAAAAAATCTTCAAAATGTAAGTAACAAATA
TACGTATTGGAAAAGAGGGCTACTGTAGTAGTAAGGATTCGCATTCATAA
AACCTTTGAATTTCCCATTGATCAATTTTAGGTTGTTGTATATATAAGAA
GCCAAGGATGTTTGGAGAGTCCTCATCAGAGGATGACTCGAGTGATGAAG
AAAACGATGACAAATGTAAAGGACCAAAAGATTATCATAAAAATTCTAAA
AAGAAAAAGAAGAAAGCAAAATCAGCGTGTAACTCAAATGATTGCAATAC
TTGTGATTGATGGATAGAAGACAAACTGTATGGACAAATAAGTTTTCCAG
CTGAAAATAGTCTGGTTAATATCTTAAATTCATACAGAAGATTTTGGTGA
ACAAAAATATCTAATTAAAAAAATAGATCAATATCCATGAGGAGAATTCA
CATGCCATAGTTTGTACTACGTAACCCGTTTATGGGGTGCATTAGCACGC
ACATTTAAGCCTCAAGTCATTAGTACTGGAAGGACTCAGAGCACAGTCAG
GCAAATGGTTTAAAGTTTATCTAATAATGTAAATAGTTTTATAATATCAT
AATTTTATTTAATACTTTGTAGTGTTTTCTTTCTAAGACCTATAATAAAC
ATGCCTCAAGTCATAAAAACGTTACTGCATAGGGTGTTGCTTGCTAATTG
AGAAGCTTTAGAGGACGGAAATTAATTTTTTTTCTAAATTCAGATTTGTG
TAGGTGGTGCAGATTTTTAACGCAAAGTAAATATCTATTGGTAACATTAA
AAGATAATTACTTCGTAACAAAATTGTGCTGTCCTACACAATTTTTCCGA
CACCCCCTGAGAATGCTACTGTAAACTATAATACAATCATTTCCATATTC
TGTTTTAATTTAGCAATATTGCAAGTTTTTATTATTGAAATCCTGCATTT
TCCAGTTAATTTTGATTGCTTTCATGTAGTGTTCATATTTTTTAGTGAAA
ATAATAACAAAAAAGAAGAAATTACAAAACAACAACAAAAATATAAATAT
GGAATATTGAAATTTCACAATTGGAAAGTATAAATGGATGATTTATTTAC
GAAGAAAAGTAAAGAAGAATCATATTACAAACTTTTAAATTGTGTTCCAA
CATCTAATAAAGAACAAATTACTGCTGAATATCGTGTCTTGGCAAAACAA
TATCATCCTGATAAAAATAAAGATACTGGTGATGAGAATGCAGGAAAGGA
GGGAAACAAAGATTCATCAGACACGTACTTAAAGTAGGAAAAACAATATA
TACAGTGTGCCCCAAAAAAACAAGCACATTTTTTATATGAAGTAAAATGT
TCATAATTTATACAAAATTTTATGACTTGTATGCTTAATATTTAAATCTC
AAAAACCTATTCAATCATCTTTAGAAACTGAATATCCATTGATTGAACAG
AGAATTGTAATCTTATTTCAATAATTCTAAAACTGTTATTGAATGAGTTT
TGATGGCTTTAATTTGTACTAGTAATAACATGGTTTAGAGTACGTGAGGG
CTATTTTGAAGTGTTTTCAATGAAACGAGGGGTTATTAATCCAAAATCAC
CCGAGAATACCATGTTATTCCGCGTTAATTATATGGTCAAAAAAAGAATT
GAAGAACACTCAATCGCTATTCTTTTCGAAACTTATGAAAACATTCGAAA
CTATAAAAAAACATTCGACACTGACACTCTTATTTTGATTGGCTTAAAAA
CTTAGTACGATATTTTGTTAACCAATCAAAATATTGTACGATACTTTTCT
TTCAACCAATAGAAATTTTTGTTTACATCAGGGCGATTACAAAAAAGCGG
GGCTATTGCGGATTTATCGCCCCGCTCGTCCTTTACAAATCTAAGCTAAA
TGTAATCAACCATATAATTAATATAGAAATTTATCTGCTTTTTTTGGGAC
ACACTGTATGTATTTATTACTACAATAATCTTTCCTTAAAACCTTGATTC
CTATATTCTCTGAAACATCAACAAAGTTTAAAATATTTTGTGTGCAAAAA
ATGAAAGATGCAAGCCCAGTGATAGCGGCATCTAGATAATTCCTTTACAC
ACTAGATTGGCTAATTGCTAAACTGTGTCCAGTTTTAGAGATATCAAGTC
AACTGGTGTCTTCTGTTTTACGTCAGATTTTAGAGCTTTTTTAATGTTTT
CATACATTTTGTCGCCAGTGAGTCACATGTACATAGAGACTTTGTTTGTT
TGACAAATTTGCTGATTACAGTTATGGACCCCCAGAAAATTAGATGCAAT
AATACAATATTAGACCCTTCAATTCAATTAAATATATGAATCAGTGGAGC
GCTAGATTCGGACTAAACGTCGACCTGAAATTCACCAAGTAAAATAAGTT
CTTGTTAAAATGGGCTTTTCCAGAAAAAATTTGAATATATATGGGGGGGT
TGAGGATATAACGTTTTTTAGAAATTTACACCCCGACCATAGTGATTATG
AACCCCCCCTCCCGGACAACAGTTCTTACCCCCTGAACAAGCATCAGTTG
ACCCCCCGGACATTCAAAATTACCCCTAAACAGAGAAAATTGGCCCTCAA
AACAAGGCAAATTTTGCAGATTTTTCACTACCCCTCCCCTCCCAAACAAA
ATATCCAATGTATCCTCCACCCCCCCCATGTACAAAAATTTTCTGGAAGA
GCCCAATGAGTTCCTTAAAATGAGTCTTAAAATGAGTTTGTAAATTCTTT
TCCAGGATAACTAAAGCTTATAAAGTATTGAGTGATGATTTGCTACGTAA
AGATTATGACAAATGGATGAATTCTGGTTTATGTGTTACTTATGAGAAAT
GGACTGAACTTTCTAAAGCAACTCACACCTCACTCCACTGGGGATGTATG
AAAAATGAACAACTCGCACTGACTAAAGGTAGTGTAGGAGTGTATAATCT
TTGTTTATTTTGTGAGCATTTGATCGATACATGTGGGGTTTAGAGAGGCT
CAGTTACATACTCTTGAGCAATAAGCTTCATAAGTGAGTTAACATACTCT
AAACGTATCTGGCAGCCACTTCTGATTATACAAGAAATATGGTATTATTC
AATAAAATGACTTTTTCTTTTCTATTTATATATCATTTAGATGATAAAAA
TGAAAAAGACAAGCTTTCTGGATCTTCATCTTCAAAAAATGCTGACTCAG
CTTGTGAAAATTCCACCACCAACAACAGTAGTGCATTGAACCCTTCCATG
GTATCAACTTTGGCCAATTCATCATCAAACAGTGGGATGAAAAGACCAAC
AGGTGGCTTCAACATTGGCAGTAGAAGAAGCAAGTTCCGGAAATATGAAA
TTTGATTTTCTATTACCATTTGGTCGAGTTGCAGGAGGCTGTGTGGCCCA
TTCTAGCAACTATTGACGTTTCAAAGCGGCCCGTCAGCATCTTGAACTGA
CTACCCAATTCCCCTCACATGGCAAGGGTTGATCTGGGCGAAGATTTGTT
TACTTAACAATTAAACCGCTGCGAGTGGGATTCGAACCTCATTCGCATGT
GCAGTAACCATTGATCACGTGTCAAACATGAAACATAATAGAAACAGTCC
TTCATCTTGTGCAATTTTTGTTTTTGTTTCACAATAATGTTTTTGTAGCA
TCAAGGAACTTAGTAGCATTGAGAAAAAAAGTTTTTGGGCCAATTTGAGC
CCAAAAAATGCCAAAAAATGACTTTGGACTTTGTTAAAAATCTGTTCAAG
AAGTTATGGCACCAACTTGCTAAATTTTAAATTATTCAGTTTTTGTTTTT
ACATTGCCTTCATTAAACTTTCATTATTCGTTTTATAAACAGGTAGGTCC
ATAAAAGTATCGCTTGTTTCATTATAGCCAACTGCAGAGTTCAAAGCATG
TTCTTCAACTTTCTTCCTTGTACAATCTATATTTATTCCCTCATTCTTTG
AATTGAAATTTGAAACTTGATGCTGGATTTTACTCAAAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031703XLOC_031703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050057-exon-scaffold_167-1575043694:684590..684840TCONS_00050057-exon-scaffold_167-1575043694:684590..684840Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1575043694:684305..684404TCONS_00050057-exon-scaffold_167-1575043694:684305..684404Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1575043694:683067..684209TCONS_00050057-exon-scaffold_167-1575043694:683067..684209Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1575043694:681413..681585TCONS_00050057-exon-scaffold_167-1575043694:681413..681585Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1575043694:680349..681200TCONS_00050057-exon-scaffold_167-1575043694:680349..681200Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1510915933:684590..684840TCONS_00050057-exon-scaffold_167-1510915933:684590..684840Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1510915933:684305..684404TCONS_00050057-exon-scaffold_167-1510915933:684305..684404Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1510915933:683067..684209TCONS_00050057-exon-scaffold_167-1510915933:683067..684209Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1510915933:681413..681585TCONS_00050057-exon-scaffold_167-1510915933:681413..681585Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1510915933:680349..681200TCONS_00050057-exon-scaffold_167-1510915933:680349..681200Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1491911889:684590..684840TCONS_00050057-exon-scaffold_167-1491911889:684590..684840Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1491911889:684305..684404TCONS_00050057-exon-scaffold_167-1491911889:684305..684404Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1491911889:683067..684209TCONS_00050057-exon-scaffold_167-1491911889:683067..684209Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1491911889:681413..681585TCONS_00050057-exon-scaffold_167-1491911889:681413..681585Clytia hemisphaericaexon
TCONS_00050057-exon-scaffold_167-1491911889:680349..681200TCONS_00050057-exon-scaffold_167-1491911889:680349..681200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:680349..684840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.52327	3.12663	5.29446	5.08061	0.00140405	0.282174	1.68327	0.000803961	0.970163	3.01204e-07	3.99312e-05	6.9213e-06	0	0	0	0	0.00101537	0	4.93938e-06	0.00107393	0.392687	1.03282	4.99167	1.0766	6.47634e-06	0.00103758	2.25069e-05	5.98484e-08	0	1.27985e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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