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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050049 ID=TCONS_00050049|Name=TCONS_00050049|organism=Clytia hemisphaerica|type=transcript|length=2894bp
AATTGAAACAAGAGACTCCCAAGAGattcttttttattgaaatgctGCTT
TTTCGTGCCTGTAATATGAATAAAATTCTTCCGCTATTAGACATATTGCT
ATGACGATTCGATATCAATTTGAAACATTGCAATcactcaaaatatattt
tttgacttgctTTTCTTGATGACTTGACTCTTGTCAAATTTAAGTGGAAA
TGAACGTACATTCATAAAAACTTTCTTGAGAAGAAAGCGGTTCACGAATG
GGACGTAAATGAAGTTGGTCTTTGGCTTGATACTATAGGATGTTCAGAGT
ACAAAGACAATTTCAAACAGCATGACATAACTGGCCCTGAACTCATTAAA
TTGGAACGCCATGATCTTAATGATTTGGGTGTCAAAAAAGTTGGTCACTC
CAAACGCATCTTAGAGAAAAGCAAACAACTAGCACGGTACCGAAAAGTTC
CAAAACCTTCAAAATGGACCAGGAAAACAGTATCGTGAGTCGTATTATTG
GAATGAAGGCCAGGAAGTGGTAACGGTGACGTAATCTGACGtcactcaaa
atggaaaaatgacaCGGCTTTGAACAaatgaattttgttttgtttcattt
tgaactaTCTAATGTCTCGTTAAAGATGCAATTATTATCCAGAATATCTT
ACCTACCTTACACAAACGAAATCAGGCTGGAAAAAGGTGGTGTATATTTT
GTCATTCTAGAGCATTTAAAACTAAATTTGATTAAAGTTCATCTGATGGA
ATTGGATACTGAACCATTATTGTGAGATGTCTTTTGTTTTGTTACGTTCG
GGGATCTACATTTGATATACATACAACGTTATAATTACAACAGTGTAAAA
CTTTTTACTTACCTCCCCCCCCTCCTCCTACCTATTTTGTATTTCTATgt
acatttttaatttattttatttccaCGTTTAGCTACTAAAATTAAACCGT
TAAAACTTTCTGCACtttaaattcatgatattcatgacgtaatgttttct
acggaaataccccggctttagccagtagtggcaaatttaaactagacaaa
atgTGTATAAAATGtaccactactggcaaaaaccggggtctttccgtaga
aaacattacgaaTATCATTAATACTGTCTTGAAGGGAAAATCCAAACAGA
TATAAAAGGCGTGAGATTTAATGTCGCGGACAATACTCGCCCTTAATATA
TTGAAAGCGTTCCCGATAGATATATTTGGTATTTGATAACATTGGGTGCA
AGTCAATTTAATCATGTAACAgtaatcattttaaaaattactttctatgc
ttttttgaattttttttgtgatcttGTAGAGCAGGCTAATATTTAACAAA
GTTTTATGACAATCATTCCAGATCATTCCTTATTTTTATGATGTCTAGAT
TAGCCCTGAAACCACACACTCTTTTTCTATAATCACAATTTAGAAGTGTG
ATGGTGAGTTAAGTTTTATGGTATAGCTTTTTCAGTTAATTTAGTCTTCT
GCAGTAAGTGGCAAACTATTGTAAATTTATCGACCAATTTTTTCTAGGTA
TAGTGAAACTCCGCACGTAGTGTCAACTTTTTGTCGTACAGCTGATTTTC
CGTAATTTGATCAGttttgtgttaattttttgtgttCTATAAATTCTCAA
GAAAAGGTAGATTTTAGTTTGGTCCTGGCTCTTCCTAAACTTTTTGTTTA
ACGTGATTTGATGTAGTAACACACGAAATGTACGCGTTTCGAActatatc
tttgttttgatttggtgtAACCAGGTTAAacttgcacgaaaaatatcaag
caaACAATCATGACATTCATGACGTTATATTTCTACTAATATTCTGATAT
TTCTGGTTTTTCCCCGGTAGCGGCAAATGTGAAACAATTTTTCTCTAGCT
TGAATTTGCCACTAATGGCAAAAACCGGGATGCTTTCGTagaaaaaatta
cgtcataaatatcataaagtttgtttacttgatatttatgacgtaatgtt
ttctacggaaataccccggtttttgccagtagtggcaaatttaaaccaTA
GAATTATTGTTTAAACTAGACGAAGCTGTATAAAATTTGTCACTatttag
aaaacattacgtcttgaatatcatgaattctttcGTGCATGTTACATGAC
ATCAAAATATAGAAGTTATTCAAAACTCGTgtattgtttcaacgttaatc
caACGTTACATGGATTATGATGGGGCCATGTTTTAATGGTGTCACCAATA
GGGAAAAGCCTAAGGATGGAGAGCAGAATCTTCTAGGATTGTGTGTTTTT
ACCGCATAAATTGCGCGTCCTGTTTGTTTTTCATACAAACTATGGATTAT
GGAGTATATGAGAAATGTAAAATGTGAAAACATTGCAGTGCTAAATTTAA
TCCGAAATGCGGCGCAAAGTTTAAGGCTTAACTTTATCCTCCTTACGAAA
GATTGAAAATTCGCCTCTAGCCtttggcttgaaactcaatgagtgTCACC
ATCATTAGGTATAATAAATGAATAACAAAATTCTGCAGGCTAGtgtaaat
tttatgaaaacttgataTTGATGTTATTATATATAATAGTGAATAATAGG
CTGGGCCTGTTGTTGTATAGCAATTATTATCTCAATAAAAATAATACCTG
AATTGAATTTAATGTATTTTTTCGTTTCCAATCattattgccccgcaggg
gcttttgttgcttcacgtagcggacttgctcgccagaaaaatattcatta
cgcacggagcgagcgttagcgagcggagtgcgactcttttggcaaacgca
tgcgcgtaagcaaaatttacaaaattttaatgATATGCGGGccctaaaaa
tggaaattcagttttttttcacgatttttttcgtctagccgcta Run BLAST on NCBI transcript from alignment at scaffold_167:587749..591090- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050049 ID=TCONS_00050049|Name=TCONS_00050049|organism=Clytia hemisphaerica|type=transcript|length=3342bp|location=Sequence derived from alignment at scaffold_167:587749..591090- (Clytia hemisphaerica)
AATTGAAACAAGAGACTCCCAAGAGATTCTTTTTTATTGAAATGCTGCTT
TTTCGTGCCTGTAATATGAATAAAATTCTTCCGCTATTAGACATATTGCT
ATGACGATTCGATATCAATTTGAAACATTGCAATCACTCAAAATATATTT
TTTGACTTGCTTTTCTTGATGACTTGACTCTTGTCAAATTTAAGTGGAAA
TGAACGTACATTCATAAAAGTAAGGTGGTCTTTCTCTGCGAGTGTATAAG
CATAAGCCTTTCATAAAAAGTTCGATAATAATTAAAAATTATTACTTTTT
TTCAATCAAACGTATCGTGCCATTTAAAATTGACTTTATAAATTTTCTAT
TTTGCAGACTTTCTTGAGAAGAAAGCGGTTCACGAATGGGACGTAAATGA
AGTTGGTCTTTGGCTTGATACTATAGGATGTTCAGAGTACAAAGACAATT
TCAAACAGCATGACATAACTGGCCCTGAACTCATTAAATTGGAACGCCAT
GATCTTAATGTGAGTTTTATTTAGAGTTGTTTTGACCCCAAGATGTTTTC
CTTACATTCCCTACAAGGTTTCAAACTCTTAACTTACAGTTGATGAATTC
GATTTTTAAGGGGAATCGGGTTTTATCGTTTCTTGTTGACGGTGGCTTTC
AATATTATCAAATAATTGAACGTATCAAATAGTAGGACATCGAATTAGAG
AGCGTCAACCGTCCTGGTAGACCAAAATTAATATATCTACGAAATTCAAA
CTTTTACAAGGTACGCCCAATTTCTGCTTCCCAATTTTGCATAACCAAAT
ATTCAAATTTTCACCTTAGGATTTGGGTGTCAAAAAAGTTGGTCACTCCA
AACGCATCTTAGAGAAAAGCAAACAACTAGCACGGTACCGAAAAGTTCCA
AAACCTTCAAAATGGACCAGGAAAACAGTATCGTGAGTCGTATTATTGGA
ATGAAGGCCAGGAAGTGGTAACGGTGACGTAATCTGACGTCACTCAAAAT
GGAAAAATGACACGGCTTTGAACAAATGAATTTTGTTTTGTTTCATTTTG
AACTATCTAATGTCTCGTTAAAGATGCAATTATTATCCAGAATATCTTAC
CTACCTTACACAAACGAAATCAGGCTGGAAAAAGGTGGTGTATATTTTGT
CATTCTAGAGCATTTAAAACTAAATTTGATTAAAGTTCATCTGATGGAAT
TGGATACTGAACCATTATTGTGAGATGTCTTTTGTTTTGTTACGTTCGGG
GATCTACATTTGATATACATACAACGTTATAATTACAACAGTGTAAAACT
TTTTACTTACCTCCCCCCCCTCCTCCTACCTATTTTGTATTTCTATGTAC
ATTTTTAATTTATTTTATTTCCACGTTTAGCTACTAAAATTAAACCGTTA
AAACTTTCTGCACTTTAAATTCATGATATTCATGACGTAATGTTTTCTAC
GGAAATACCCCGGCTTTAGCCAGTAGTGGCAAATTTAAACTAGACAAAAT
GTGTATAAAATGTACCACTACTGGCAAAAACCGGGGTCTTTCCGTAGAAA
ACATTACGAATATCATTAATACTGTCTTGAAGGGAAAATCCAAACAGATA
TAAAAGGCGTGAGATTTAATGTCGCGGACAATACTCGCCCTTAATATATT
GAAAGCGTTCCCGATAGATATATTTGGTATTTGATAACATTGGGTGCAAG
TCAATTTAATCATGTAACAGTAATCATTTTAAAAATTACTTTCTATGCTT
TTTTGAATTTTTTTTGTGATCTTGTAGAGCAGGCTAATATTTAACAAAGT
TTTATGACAATCATTCCAGATCATTCCTTATTTTTATGATGTCTAGATTA
GCCCTGAAACCACACACTCTTTTTCTATAATCACAATTTAGAAGTGTGAT
GGTGAGTTAAGTTTTATGGTATAGCTTTTTCAGTTAATTTAGTCTTCTGC
AGTAAGTGGCAAACTATTGTAAATTTATCGACCAATTTTTTCTAGGTATA
GTGAAACTCCGCACGTAGTGTCAACTTTTTGTCGTACAGCTGATTTTCCG
TAATTTGATCAGTTTTGTGTTAATTTTTTGTGTTCTATAAATTCTCAAGA
AAAGGTAGATTTTAGTTTGGTCCTGGCTCTTCCTAAACTTTTTGTTTAAC
GTGATTTGATGTAGTAACACACGAAATGTACGCGTTTCGAACTATATCTT
TGTTTTGATTTGGTGTAACCAGGTTAAACTTGCACGAAAAATATCAAGCA
AACAATCATGACATTCATGACGTTATATTTCTACTAATATTCTGATATTT
CTGGTTTTTCCCCGGTAGCGGCAAATGTGAAACAATTTTTCTCTAGCTTG
AATTTGCCACTAATGGCAAAAACCGGGATGCTTTCGTAGAAAAAATTACG
TCATAAATATCATAAAGTTTGTTTACTTGATATTTATGACGTAATGTTTT
CTACGGAAATACCCCGGTTTTTGCCAGTAGTGGCAAATTTAAACCATAGA
ATTATTGTTTAAACTAGACGAAGCTGTATAAAATTTGTCACTATTTAGAA
AACATTACGTCTTGAATATCATGAATTCTTTCGTGCATGTTACATGACAT
CAAAATATAGAAGTTATTCAAAACTCGTGTATTGTTTCAACGTTAATCCA
ACGTTACATGGATTATGATGGGGCCATGTTTTAATGGTGTCACCAATAGG
GAAAAGCCTAAGGATGGAGAGCAGAATCTTCTAGGATTGTGTGTTTTTAC
CGCATAAATTGCGCGTCCTGTTTGTTTTTCATACAAACTATGGATTATGG
AGTATATGAGAAATGTAAAATGTGAAAACATTGCAGTGCTAAATTTAATC
CGAAATGCGGCGCAAAGTTTAAGGCTTAACTTTATCCTCCTTACGAAAGA
TTGAAAATTCGCCTCTAGCCTTTGGCTTGAAACTCAATGAGTGTCACCAT
CATTAGGTATAATAAATGAATAACAAAATTCTGCAGGCTAGTGTAAATTT
TATGAAAACTTGATATTGATGTTATTATATATAATAGTGAATAATAGGCT
GGGCCTGTTGTTGTATAGCAATTATTATCTCAATAAAAATAATACCTGAA
TTGAATTTAATGTATTTTTTCGTTTCCAATCATTATTGCCCCGCAGGGGC
TTTTGTTGCTTCACGTAGCGGACTTGCTCGCCAGAAAAATATTCATTACG
CACGGAGCGAGCGTTAGCGAGCGGAGTGCGACTCTTTTGGCAAACGCATG
CGCGTAAGCAAAATTTACAAAATTTTAATGATATGCGGGCCCTAAAAATG
GAAATTCAGTTTTTTTTCACGATTTTTTTCGTCTAGCCGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00050049-exon-scaffold_167-1575043694:590872..591090 | TCONS_00050049-exon-scaffold_167-1575043694:590872..591090 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1575043694:590582..590733 | TCONS_00050049-exon-scaffold_167-1575043694:590582..590733 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1575043694:587749..590271 | TCONS_00050049-exon-scaffold_167-1575043694:587749..590271 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1510915933:590872..591090 | TCONS_00050049-exon-scaffold_167-1510915933:590872..591090 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1510915933:590582..590733 | TCONS_00050049-exon-scaffold_167-1510915933:590582..590733 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1510915933:587749..590271 | TCONS_00050049-exon-scaffold_167-1510915933:587749..590271 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1491911889:590872..591090 | TCONS_00050049-exon-scaffold_167-1491911889:590872..591090 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1491911889:590582..590733 | TCONS_00050049-exon-scaffold_167-1491911889:590582..590733 | Clytia hemisphaerica | exon |
| TCONS_00050049-exon-scaffold_167-1491911889:587749..590271 | TCONS_00050049-exon-scaffold_167-1491911889:587749..590271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:587749..591090 - |
Blast
BLAST of TCONS_00050049 vs. Swiss-Prot (Human)
Match: DGKH (Diacylglycerol kinase eta OS=Homo sapiens GN=DGKH PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 7.222e-16 Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 3
Query: 192 KWK*TYIHKNFLEKKAVHEWDVNEVGLWLDTIGCSEYKDNFKQHDITGPELIKLERHDLNDLGVKKVGHSKRILEKSKQLAR 437
K+K + K + V +W EV WLD + EYKD F +HDI G EL+ LER DL DLG+ KVGH KRIL+ K+L R
Sbjct: 1132 KFKKEKVQKQKTSSQPVQKWGTEEVAAWLDLLNLGEYKDIFIRHDIRGAELLHLERRDLKDLGIPKVGHVKRILQGIKELGR 1213
The following BLAST results are available for this feature:
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