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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050047 ID=TCONS_00050047|Name=TCONS_00050047|organism=Clytia hemisphaerica|type=transcript|length=682bp
TAAAAACTCAAATGTAGATAAAACCGAGGTTGCAGATGGAAAAGGATTGG
AAGAATAGTACAATATTGTATTGTATCATTCTAATGTACCAATCCAAATG
TTGCTTTTCGCTAAGATGTGAATCAAACATACCACCTAATGTTCATGGCG
TTCACCCGAGCATGTTAGTCGACTCAGAAACGAAAGTGACAAAAAACAAG
TTGATCCATGTGATTCCTCGAATCTCAACCGAATGGTCGTTATCGCTAAC
GATACGAATCGAAAACGCTCGATTAGGatattggaaaaatattattcATT
TCTCAACTGGTGAAAATTATAGTCGGTTGCCAGCAATTTTTCTTTCCCAA
CATACTGACACTTTACACATTTGCTATGACATCAACGGTTTTGTAAATCA
TTGTCACAATCCACCAATCAAAATTGGGCAAAAACATCACGTGACAGTTC
ATCAGAGATATATCTCAAATGGAGATTACAGATATTTTATCATATTGGAT
GGAGTGGAGGTATATTCTGTAATCAATAAACAAGCGAAACAATTTTATAA
TGTTCAAGTTTTTACTGGTGATCCGTGGTATGCTGCAGATGATTATATTT
CGAACGTTGAATTCAGTAattatttgtaaaaataaaataagaaacaAATT
TTGTAGTTCTTCAACAAAAGGCTGGAAAGGCT Run BLAST on NCBI transcript from alignment at scaffold_167:502049..508168- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050047 ID=TCONS_00050047|Name=TCONS_00050047|organism=Clytia hemisphaerica|type=transcript|length=6120bp|location=Sequence derived from alignment at scaffold_167:502049..508168- (Clytia hemisphaerica)
TAAAAACTCAAATGTAGATAAAACCGAGGTTGCAGATGGAAAAGGATTGG
AAGAATAGTACAATATTGTATTGTATCATTCTAATGGTATGCATTTTCTT
TTGACAAACTAAAATAGTCTTGAAGAGAGAAATTTTGTCTGAAATAGATT
TTACATTTCTGCTAGAATCATTAGTGTCAATCACTCAAAGTTTTCTTACT
GTATGAGGTTTTTTCCATGCAGAACCTGTCAGATTATAATCTGGCAGGAT
CCAGGTTTCACCATCAATGATCTCAATTTTCAGGATCCAATTTCTACTAA
GAATTGGTATCTAACATGGGGTGTCCATTTTTCTTCGTTAAACGTCAAGA
TTTGTTTTTGCTGTTTTTTTTGACAGGCTTGTACTGTAGCAGGATTTTCT
CATACTTATTTTTAGTACCAATCCAAATGTTGCTTTTCGCTAAGATGTGA
ATCAAACATACCACCTAATGTTCATGGCGTTCACCCGAGCATGTTAGTCG
ACTCAGGTAAATATTTTGTGGTAAAAACTTAATTTTCTAATGTAACCACT
CTCAAGTATAAAAAATTTTGCATCTCCGTAGAAACCTTAAACATATAATT
GAAAAAGTACTTCTGAGCCCATTTCTTAAATTATTGTGCCCGTGAACAAT
GTAAATAATTTTATGGCCAATCCATAGGAAAGGGAAAGAAATTGATAGCA
CCTATGGGGACGATCAGATCGGGCATAGAATTAACCCTGGTAAAAATTCT
TGAAAAGATCTGAAAAGATCGTTGAAGATCTTTCAAGATCTTTAACAAGT
AAGAATCTTATAAAATCTTTGTAAGATCTTACAACGATTCTTAGGCAATC
TCGAAAATTTCTTCCAACAAAAAGATCTTTAAAGATCTTGTAAAGAAATC
GTTAAGAATTGTCAAGATTCTTCCCGCATATTTATAGTAAGATAATTATT
ATTTCTTNNNNNNNNNNNNNNNNNNNNNTGTATTAATGAAATAGTTGATT
AATGACGAGGTCATCAGTTGAATGCTGTCACTCGAGCGAAGCTTTCGGCC
CTTATTCAATAACTGAACGGGGATAGTAGTAAAATCCCGTCAGCGACCGT
AGTGCAGTGGTAGAGCATCCGTCTACGGTGCGCAAGGTTGTGGGTTCAAC
CCCCGGTCGGGTCACACCAAAGATTCCCAAAATGGTACTTGAAGCCTCTC
TGCTTGATGCTCACCAAGTAAGCGGAGCAATCCCCCCCTACCTTCAGGTA
GATAGCTATCGAAAGTGGAGCCTTCAGGTCACCTCCGACTTACTTTTACT
TAAGATTCCGTCAAGATCTTGAATCACTGTAAGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNAATCACTGTAAGGGACAAGAATCTTATTCAAAACTTATA
AAAGAGTCTTATCAGATCGTTAAAGATCTTGAAAGATCTTGGCACGTTCG
TAGTAAGAAACTGAAAAGGAATAAGCAAAGTTTCTTGATAAGATCTTTTC
AAGAACTTTTCAAGAATTTTTACCAGGGAAGATATCTTGAATTGCAGCTG
ACGTGTTTTCGAAGCGCCCCTTTATAGGCCGTCTGCTGCACAAATCTGAT
GTGATAAATGTATTTAGAGCATACAACATATCATTGTTAAATTATATCCT
TAGAAATGAAAGTAACACAGAACAATTTGATCCATACGATTCCTCGAATC
TCAACTGAATGGTCTTTATCACTAACGATACGAATCGAAAAGTCTCGATT
AGGATATTGGAAAAGTATTATTCATTTCTCAACCGGTGAAAATTATAGTC
GGTTGCCGGCAATTTTTCTTTCCCCAAGTACTGACACTTTACACATTTGC
TATGACATCAACGGTAATGTAAATCATTGTCACGATCCACCAATCAAGAT
TGGGAAAAGTCATCACGTGACAGTTCATCAGAGGTATATCTCAAATGGAT
ATTACAAATATTTCATCATATTCGATGGATTGGAAGTACATTCTGTAATC
AAAAAACAAGCTCAACAATTTTATAATGTTCAAGTTTTTACTGGTGATCC
GTGGTATGCTGCAGATGATTATATTTCGAATGTTGAATTCACTAATTATT
TGTAATCATTTGTAATATTCTGATAATGAATTGATACTTTTATGGTAATT
GTAAATAAAAAGATACAGGTAAGAGAGGGTAAAAATAGGGGACTGAAACT
CGATGGGACTTGAAATTCTGATATTTTTTATAGCTGGGGAGTTAAATCTA
TTGTTTTCAAGCCAATATATTCAGTGGGGATTGGAAAATAGCATAATACT
CTTTAGTGAGGATTAGTTTATTTGATTATTTTCAGTGGGGACAAAAATTG
GAGTATAATTTTCCACTGGGGACGATATTTTTGCTAATTTTTCCAATGGG
AAAGTCTGGGAGAATGAAGTTGCAGATCATGAGAAGGATCATTTTGCAAA
AAAAAAAAATTGAAATTTTGCTGACATCAGCACTTTTTTGCAAAATGTTG
TATATTTTGCTGATATTCTGCTGACGACAGCAAAACTTTCAAAAGTTTTA
TTTTGAAAAATTACCCTTTTAATGATATTCAACGTTAATCCAAATTTCAT
GTTTCTACCATTAGCCAAACTGGAGATATTTGAAAAACAAGTTTTGCTAA
CGTCAACACTTTTTAGTTTTTGCGGTTTTTCGCGAAAATAAGGGTGTAAA
CAATTAGGTAACACCCCTACAGCGAAACTTCATCATGGTATCCTTCGTAG
CAAATCATTGGTTTGCTCATTTTCTGCCGGCTAATGGTCTTCAAAAATTA
TGGTAATTTTCAGGTTTTTGAGACATGCCATAATTACCTGAGAAGACAAA
CATTTCGCCAGATTCAAAAATAGTGTTCGGAGATTATGGGACTTATCCAA
GGGGGGGGGGCTTAACGAACTCATTGAAGGTTTTTGTCGCACTAAAATTT
CTAACATTTTGAGTAGAATAAAAAATGCCATGTTGCCTTAGGATAGATAT
GAATGGTTTTCAATAGTGTGTTAACTTTACTTAGTACCCCTTCTCACAGA
CCCGGTAGAATTTATTCAGCCAGTGGGGATTTTGTATTCCCAATTTCATT
AGGGCTGGGGATTTGAATTCCATTGTTTCAAGTAAAAATATATATCAATC
TATCATCTTTTTATCTATATATCTATCTTTTCAGCCAGATCTTTGAATTA
GGTCCTCACAAAAAGTTACGGCAGCTGAAAAGTATTGCTATTGTTAGCTG
GGGCCATCTTGAAAGAGTTGAATAAAAAGTTTTGAGGTCAAGAATTTATC
AATGTCCATTCTTGGCAAGTCTATACCATTAAATTATACTTTTCTTTCAA
TTTTTCTTTTTCTGTTTGCTTAGCAATTAGCAAAACAGTTTGTTATCGAA
TATTCATGAGTTCAAATTTCTCAATGCTTAATAGAGATTTTGATATTATA
AATTAATGGTCTAACCATAGTGAATTTTGATATTTGTCATGTACAAAATA
TAATCTTCTGCTTGATGTAGCTATCAAAACTTTGACATGTTATACATTTT
CTGTTAAACCAACTATCCTTGAGTCTAAAAATTTATGAATCGCAAAGAAA
AAATTTTTGATGAAGAAGAAAATGAAGACTTTTGTGACGAAGAGTATTTC
AACTTTGAAGACCTTTGTTTGGTCGAAGAAGAAATATTTTGAAATTTTTT
TTGCGGTAGATGGTGTATTTTCGGAAAATTTTTCTAAAAGACTTGTCTCA
AAATCTCAAAATCATGAAAAAAGTGCTTTTTGACTTATTATTCATCCCAA
TTGTTCATAGAAAAACAGCTTTTACTTTTGATGCATCAATTTAGAAAATT
TTTCAGAAAAATTTAAAACAGTTCAATTCTTTGCAGACAGTTTGAAAAAA
TTTCGGAACAAAAAGTTTAATTACCCATTAAAACTTAGCACTTTTTATGA
AAGAGGATGATGTAACATATTATTAACGTCTTTTTAAAGTTCATGACGTC
AGCTTTGTAATTAAATTCTTAATTACTTTTATGGGATTTGATAAAAAAGC
AATTTGTAAAGGCAATTCTTTGTCAAAAGTGTAAAGGAACCTGAATTATT
ATTTTTATGCTTAAATACCTAAATATACATTTTTTTGGGTCTCGTTGTTC
TTATAAAATTGTTCTTTATAAAGAAAAAGAGTGTATCTGTTTAAACATTA
ATTGCGCATGGATACATTATAGTAGGAAGTTTCAGAATTAGAATGAAAAG
GAAGAAGAATCCAGAAAAAACAGCACGGGGCCATATGCGTGCCCCATTTT
GTTTTTTGGATATTGATGAGTCATACTTATAGGAAGGTTCTTTCAATAAA
CAGCACAATTTTTGTTTTCAAGGCCTGGAAATTTCTCTTATATAATCACC
TACACTGAATGATTGAAGTTTTATCTTGATTCTAAACTTTTTCTCATCCA
CAGTCCAAACTATAAAAACTCAAATGTAGATATCCGAGGTTGCAGATGGA
AAAGGATTGGAAGAATAGTACAATATTGTATTTTATCATTCTAATGGTAT
GTATTTTCTTTTGACAAACTAAAATAGTCTTGAAGAGAGAAAGAAATTTT
GTCTGAAATATATTTTACATTTCTGCTAGAATCATTAGTGAATTACTCAA
GTATTCTTGCTGGACACAACGTTGTTTCAACGTTCATCTAACGTTATATG
AATGTTACGAACGTTAAATATACGTTGAAACAACGTTGTGTGCCAGCTGG
GTTACTGTGNTAGGTAAAGATTAGAGATACTTTATCTTAATCGATGGATT
GGAAGTACATTCTGTAGTCAATAAACAATAAGCTCAGCGTATTTCAAATT
TCATTTGCAATGGTCTAAATTTTCAGGGTCCATTTTCAACTAATTTGTAT
CTAACATAGGGGGGCCAATTTTTCTTCGTCAAACATCAAGGTTTGTTTTT
GCTGTTCTTTTGACAGACTTGTTGCAGGATTTTTTCACTTAAAAATACTT
GAAACTCCCTTGTTTGATTGGCTTTGTTCTACTTATTTTCAGTACCACTG
GAAATGTTGTGTTTCGCTAAGATGTGAATCAAACATACCACCTAACATTC
ATGGCGTTCACCCGAGCATGTTAGTCGACTCAGGTAAATATTTTGTGGTA
AAAAATAGCTTAAATTGCTAATTAAACCACTCAAATATCAGAAATTCTGC
ATCTCGGTAGAAAAATTCAGCATCATTCAACATTATTAAAAAACAATTTC
TGAGCCCAACTCTTAAAGCCGCTAATTATTGCATGAATTTCATAAATTAA
ACCTTCAAAGGCTGTCGCTTTGAGCGCAACAAAAGTTGAAACTTTTCAAC
CTTTTTGCTGAGCTGTGCACCTTCCCAATTGTTCTTTTTGAATTAGCCAA
TCAGAAGAGACATTTAACACTCTTGTACCGTGTGCAAAAAATATCAACAA
TAGAAAAAAGAAAAAATATGCAGCATATCTTCCCTTTATTTTGGATCAGG
GGAATGGAAAAGGCGTTCAGTGACCAAAGTGCCTGAGCCGTGCGCCTTGT
TCGCCAACCATAAAATGCTAAGTGGGTAGCGGCCTTAACATATCAATATT
AAATTATATCCTTAGAAACGAAAGTGACAAAAAACAAGTTGATCCATGTG
ATTCCTCGAATCTCAACCGAATGGTCGTTATCGCTAACGATACGAATCGA
AAACGCTCGATTAGGATATTGGAAAAATATTATTCATTTCTCAACTGGTG
AAAATTATAGTCGGTTGCCAGCAATTTTTCTTTCCCAACATACTGACACT
TTACACATTTGCTATGACATCAACGGTTTTGTAAATCATTGTCACAATCC
ACCAATCAAAATTGGGCAAAAACATCACGTGACAGTTCATCAGAGATATA
TCTCAAATGGAGATTACAGATATTTTATCATATTGGATGGAGTGGAGGTA
TATTCTGTAATCAATAAACAAGCGAAACAATTTTATAATGTTCAAGTTTT
TACTGGTGATCCGTGGTATGCTGCAGATGATTATATTTCGAACGTTGAAT
TCAGTAATTATTTGTAAAAATAAAATAAGAAACAAATTTTGTAGTTCTTC
AACAAAAGGCTGGAAAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050047-exon-scaffold_167-1575043694:508083..508168 | TCONS_00050047-exon-scaffold_167-1575043694:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1575043694:507663..507753 | TCONS_00050047-exon-scaffold_167-1575043694:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1575043694:502049..502553 | TCONS_00050047-exon-scaffold_167-1575043694:502049..502553 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1510915933:508083..508168 | TCONS_00050047-exon-scaffold_167-1510915933:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1510915933:507663..507753 | TCONS_00050047-exon-scaffold_167-1510915933:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1510915933:502049..502553 | TCONS_00050047-exon-scaffold_167-1510915933:502049..502553 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1491911889:508083..508168 | TCONS_00050047-exon-scaffold_167-1491911889:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1491911889:507663..507753 | TCONS_00050047-exon-scaffold_167-1491911889:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050047-exon-scaffold_167-1491911889:502049..502553 | TCONS_00050047-exon-scaffold_167-1491911889:502049..502553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:502049..508168 - |
Blast
The following BLAST results are available for this feature:
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