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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050034 ID=TCONS_00050034|Name=TCONS_00050034|organism=Clytia hemisphaerica|type=transcript|length=2019bp
taagcataatgctaaTCATACCTCCAAGCCGAAACGCAAAAAAAATCGTG
CAGCTTTTCTAAAcgaataagcataaattaaggctaaaaatgagattttg
ctaatCATATTGAGCCTCAACCCGATTTttccgtatgcttataaaaatag
tGTATTTGGcattatcggcgatccaaaataTATCTGCagtctgattggtt
aaaaagagtacaatatatcttgtattttacatgtaaaaatataaattaac
aaaaagatgttgttgtattgtagcggtagcagcaatctaacgtcactttg
ctacaaaagtgctctgcgtttttttccaaaacaaaaagtgcattttttgg
gtcaccgataaaccagttatcagacatttgctcgtacaatatggaaatat
ttcactcgttccggattttccgtatattttcctcgcctaaaggctggTAA
AATATTGTACGGGAAAATCGCGGAACtcgcaaatgtctgataactattac
atatttaGCGTTTAATAGTACACTGTTCTTTCAAACTGCATTGTCTTTTA
AATACATTTATGAACAGCCAGTAAAACCAAATAAACTATGATCTCTACAA
AAGAGATGATGGATGCTCCAATACAAAAGACCAAGATTGCTCCAATCCTA
CTGAACAATTGAGAAACAGTGTAAATAGgcttttcttcaaattctttgTG
CTCGTCAAAGATTTTACTTCTGACATGAAGCCAATATCTTATTGGACCAA
CATCACCAGAATAATCAAAATCACTTTGTTCTCCTCCAAATAGTACAAGC
GAAGTGTCATATCTGATTTCGTCACATGGTTTTGGGCAATCTGGAACAGA
CATATTCATTCTGTTGAATCTATGAATACAACCAATAGCCTCAGCTATAG
ATTGTTGGCGGCtgtacttttcttttgtttcctcAGGAATGAATTGTCGG
TCAAAATCATAACAATCTCCACACTCTTTGAAGATCTTGATATCTAGATT
CGATTTCAAACATCCAACTCGAGCATATTTTCCAGGTAAGATATCTTCAC
CTTTGTCAGCTACACAATTTGATGGATAAGGACTTGGCAATCGTTTGGTG
ACGATTTTCTCATAAGTTATTTCTACTTCTCGTGATGGTTGTAACATGAC
TTTAGAATCAACCAAACTCTTCAGTGGATTAACATTTGTTTCGTGAATAG
TAAGAGCTAAATCGTCTCTATTGTCGCGATTTTGTGATAAACTCATATAG
GCCCAAGCATCTTGTAAATGACCGTCATAATTGAATGTTACACAAGCATC
CTCAAGAAAGCTAGTCGCTTTGAAAAACGATTTATTTAGACAATCCTGTC
CAGTTGCTAAAGCTTGGCAATTCGAGATATTAAAAGCACCATTGGTCCAA
ATTCCATGTTCAACTTCCTCAAACTCTGCTTTAGTGGGTTTAATATTCTC
CTGATCACAGATTATGCTTCTATTTCCGTGTTCCCAAGATGGTTTCCCAC
AATAAGATAAACGTGTTTCCCTTAACTTAGCTTGATTACAAATAGTAATA
CTTGGAAAGACGTGCTCCTTTGTTAGTTTATCTCTCATTTCAGTGTAATA
ATCATATTTATGGTACTCAGCTATCAAATTATGGATAGAGATTGCAACAA
AGATTGTCGTTAGGAgtaaaattacagaccagaagaTTGATTCTCTTCGG
TTGCCCTTGAAAACTCGAGTTAATCCGTGGATACTGAACGAGTTGATGTA
TTCTTCGATTTTCGTTTTGATGACCATTTTACTGGTCATCTGGTTTTCAT
GCCATATGTTGTCTTCATCGCTTTCTTTCATTTCTTCTGGATCAATCAGC
ATGTGCTCGTCTTTGTAGTATTTTACTATGTATAAGAAATAAGAATCGAA
GGTTAGTTGGTAATTTTTGTATACATACATAAAGCAGCAATTGAACCTCT
TACAGGGTTATAaattctcgtaaaatgtttatcaaaatttgaagatttcg
GCTGAAAGTTGCAAAATAG Run BLAST on NCBI transcript from alignment at scaffold_167:367273..369346- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050034 ID=TCONS_00050034|Name=TCONS_00050034|organism=Clytia hemisphaerica|type=transcript|length=2074bp|location=Sequence derived from alignment at scaffold_167:367273..369346- (Clytia hemisphaerica)
TAAGCATAATGCTAATCATACCTCCAAGCCGAAACGCAAAAAAAATCGTG
CAGCTTTTCTAAACGAATAAGCATAAATTAAGGCTAAAAATGAGATTTTG
CTAATCATATTGAGCCTCAACCCGATTTTTCCGTATGCTTATAAAAATAG
TGTATTTGGCATTATCGGCGATCCAAAATATATCTGCAGTCTGATTGGTT
AAAAAGAGTACAATATATCTTGTATTTTACATGTAAAAATATAAATTAAC
AAAAAGATGTTGTTGTATTGTAGCGGTAGCAGCAATCTAACGTCACTTTG
CTACAAAAGTGCTCTGCGTTTTTTTCCAAAACAAAAAGTGCATTTTTTGG
GTCACCGATAAACCAGTTATCAGACATTTGCTCGTACAATATGGAAATAT
TTCACTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAGGCTGGTAA
AATATTGTACGGGAAAATCGCGGAACTCGCAAATGTCTGATAACTATTAC
ATATTTAGCGTTTAATAGTACACTGTTCTTTCAAACTGCATTGTCTTTTA
AATACATTTATGAACAGCCAGTAAAACCAAATAAACTATGATCTCTACAA
AAGAGATGATGGATGCTCCAATACAAAAGACCAAGATTGCTCCAATCCTA
CTGAACAATTGAGAAACAGTGTAAATAGGCTTTTCTTCAAATTCTTTGTG
CTCGTCAAAGATTTTACTTCTGACATGAAGCCAATATCTTATTGGACCAA
CATCACCAGAATAATCAAAATCACTTTGTTCTCCTCCAAATAGTACAAGC
GAAGTGTCATATCTGATTTCGTCACATGGTTTTGNGTCCTCCAAATAGTA
CAAGCGCAGTGTCATATCTGATTTCGTCACATGGTTTTGGGCAATCTGGA
ACAGACATATTCATTCTGTTGAATCTATGAATACAACCAATAGCCTCAGC
TATAGATTGTTGGCGGCTGTACTTTTCTTTTGTTTCCTCAGGAATGAATT
GTCGGTCAAAATCATAACAATCTCCACACTCTTTGAAGATCTTGATATCT
AGATTCGATTTCAAACATCCAACTCGAGCATATTTTCCAGGTAAGATATC
TTCACCTTTGTCAGCTACACAATTTGATGGATAAGGACTTGGCAATCGTT
TGGTGACGATTTTCTCATAAGTTATTTCTACTTCTCGTGATGGTTGTAAC
ATGACTTTAGAATCAACCAAACTCTTCAGTGGATTAACATTTGTTTCGTG
AATAGTAAGAGCTAAATCGTCTCTATTGTCGCGATTTTGTGATAAACTCA
TATAGGCCCAAGCATCTTGTAAATGACCGTCATAATTGAATGTTACACAA
GCATCCTCAAGAAAGCTAGTCGCTTTGAAAAACGATTTATTTAGACAATC
CTGTCCAGTTGCTAAAGCTTGGCAATTCGAGATATTAAAAGCACCATTGG
TCCAAATTCCATGTTCAACTTCCTCAAACTCTGCTTTAGTGGGTTTAATA
TTCTCCTGATCACAGATTATGCTTCTATTTCCGTGTTCCCAAGATGGTTT
CCCACAATAAGATAAACGTGTTTCCCTTAACTTAGCTTGATTACAAATAG
TAATACTTGGAAAGACGTGCTCCTTTGTTAGTTTATCTCTCATTTCAGTG
TAATAATCATATTTATGGTACTCAGCTATCAAATTATGGATAGAGATTGC
AACAAAGATTGTCGTTAGGAGTAAAATTACAGACCAGAAGATTGATTCTC
TTCGGTTGCCCTTGAAAACTCGAGTTAATCCGTGGATACTGAACGAGTTG
ATGTATTCTTCGATTTTCGTTTTGATGACCATTTTACTGGTCATCTGGTT
TTCATGCCATATGTTGTCTTCATCGCTTTCTTTCATTTCTTCTGGATCAA
TCAGCATGTGCTCGTCTTTGTAGTATTTTACTATGTATAAGAAATAAGAA
TCGAAGGTTAGTTGGTAATTTTTGTATACATACATAAAGCAGCAATTGAA
CCTCTTACAGGGTTATAAATTCTCGTAAAATGTTTATCAAAATTTGAAGA
TTTCGGCTGAAAGTTGCAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050034-exon-scaffold_167-1575043694:368522..369346 | TCONS_00050034-exon-scaffold_167-1575043694:368522..369346 | Clytia hemisphaerica | exon |
| TCONS_00050034-exon-scaffold_167-1575043694:367273..368466 | TCONS_00050034-exon-scaffold_167-1575043694:367273..368466 | Clytia hemisphaerica | exon |
| TCONS_00050034-exon-scaffold_167-1510915933:368522..369346 | TCONS_00050034-exon-scaffold_167-1510915933:368522..369346 | Clytia hemisphaerica | exon |
| TCONS_00050034-exon-scaffold_167-1510915933:367273..368466 | TCONS_00050034-exon-scaffold_167-1510915933:367273..368466 | Clytia hemisphaerica | exon |
| TCONS_00050034-exon-scaffold_167-1491911889:368522..369346 | TCONS_00050034-exon-scaffold_167-1491911889:368522..369346 | Clytia hemisphaerica | exon |
| TCONS_00050034-exon-scaffold_167-1491911889:367273..368466 | TCONS_00050034-exon-scaffold_167-1491911889:367273..368466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:367273..369346 - |
Blast
The following BLAST results are available for this feature:
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