TCONS_00050023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050023
Unique NameTCONS_00050023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050023 ID=TCONS_00050023|Name=TCONS_00050023|organism=Clytia hemisphaerica|type=transcript|length=2951bp
CAAGAAATCGCCATACTAGTGGAAATGCAGGGTGGATTGATTGACAATAT
CCAACATAATGTCGAAGAAACCATCATCATAGTGGAAGAATCACAACAAC
AATTACGAAAAGCTATGAAATACAAACGTCAAAACATTTTCACTTGTTGT
TGTCCAGCATTCGTTCGAAACAGTATACATTGCTGTACCGTCATGTGAAT
ATCAATCCGCCCTAGCTAGCTCAGCATAAACAGCCTTATTTGGACAGTCA
TCTAACGCTATCTGGATGTCATGGACGCTACATGGATGTTGTTTTGACGT
AATGTGCTATAGTTCCTATTTAGAAATGTCCAAATCGTTGACCATGAGAC
TGATTCCATAAAGCCAATGTGCGATTTCAtgttgtacatgtttttttgat
aagcattacatttataagcatatacaggctcagtttttggtacctaacaa
tagctctattgttttggaacaataaaatgctAAACATAGTACTAGCCTGA
TATAGAGGTAGGcactttataaaaaaacatgtacgtgAAGCTCATCATGA
agtataattcgaacaaaatggAAAATAGCTATACTTTTCAAACAGAACTA
ACAGTTAACGTATCGGCATATTTAGACCTTTTGGCAAAAGTGAAAAGATG
TTTAAATAAAATCATGATGATGGACACTCCCTTTAAACAGAAATGTTTTG
CAAAATCAAGAATTATTGAGTACTGATATGGATCCAGGTATActaatttc
atttgaaaaattcttcaaaacctATTTGTTTCAGGAGTATTTTTTGTAAT
CATCAAAAGTCCTAATAAATAATCTAATAAATTTTTATACAAGCAACTAa
taaaataccttaagggaactattttttgcaggaactaatttttgcggttc
gcagttcaagatttaatatttaatatttgcgggaacttaattttgcggat
ttctcacttgaaagaaaataagagccgtactgtgaattattcgacctttc
tttttcgcatttgaaaaatattttacggtttgggcctaaatccgcaaaaa
ccgcaaaatttagcTCCCTTAACCAAGGAATTCCTTGCCTTAACATAATA
AGCAATTTTTTGTGTGTGAAAATACCTATAAATACGATTCAATTAAATTA
AGTCTGCTCATTGTCACACACCACCCTTGGTCCTTCTTATCAGTGTAAAT
TTACAATTATAGTTCATTCAACATTGTGGCTGGCAgttttctttcaaagc
aaaagcGCGTCAATCCCTTCTACGTTATATTCCTCAAAGCAGTTCGAATT
ACATCATTGTACAACAAGCTTGACAATAATTTTGTGATAGTTGTGCCTTC
TGGTACACTCTCAACGCTTTCTTGGTCAAATAGAACGAATCGTCTTTAGG
TTTCTCAGTATAAGGATCTACAAGAATGAAATCAGTCGTCTTATTTGCTT
TTTCTTCGTCATTTTCTGATGTTGTCGATTCTTCTTGATCGATTTGAGAA
TCTTCTTCCTTGATCTCAACACCTTTATCAACTTTATCAAGGCTTTCTAC
ATCTGGAGATGAATTTCCATCAGTCATGAACGGGTTCTTGCCATCGCAAC
CATGTTTTTCGGTGGTGTTTTCTTCTTTCTCCAACATTTGTGTCACATGC
GTCAAACTAGATGCTTCCAATGTATCGTCAACCTCGTTGGACTGGTCTGG
CGATTCAGTTTGGTAATCTTGATTTTGACTTTCTGCTGAAACCTCTGCAT
CCTCTTGTTGAGCATTTTGATCAACCACATTTGTAATTTCGCAAACATCA
GTTTCTTCACCAGTCAGTATACTTGATTCATCATCTTTGGGTATTTCACA
TTCGCCAGCAGTATTTCCTTGATCCTGCTCTTCCAATTCTTTAGAGGCAG
CCAACATCGAGAATCTTTTCCAATGAAATTTCTTACGTTTTTCTGTtcct
tgttttgatgttgtttgaTCGTTACCATCTTCAACAGCTTCTTGGGTATC
AGAAGCTTCCTGTACTACCGCTTTATTCTTTCGTCTCATTCTGATTGAAC
GAGGAATCTTGCGGGAAAATTTCCTTTTCCCAACACCACCAGCAGAAGCA
GTAGCTTCATTCTTACTTGATTGAGGCTCTTCACTATCTGCTTGCTGATC
ACCAGGAGAACCTGGAGGTTTTGATTCTTCATTCTCGGTATCTTGGTGTG
GTTCAGAATCTTCCAAAGATTCTTCTTTCTCTGGCTGAACATTCTCATGT
TCTGCACCATTGTTAACCACTTCTTCTTCCTCAGCAGATGTGATGGCGAC
TTTGACAGGTATGCCAGTTCTTTTCCATTTGAATCTGTTTCTCTTAGGTG
GCAATGGTGGTGGTGTTTCATTCTCTTCATCTTTGGCGATTTCTTCATCA
GCAGGAGTTTCCTTGACTTCCTCTTTCGAAGTCTCGGTGATTCTCGACAG
ACTGAATTCTTCATTATTATCTTGTATTTGTTCTTTAACTtcctcttctt
cattttctttcgtttttgttgAAGATGAAACAGTAATCTTTCGTTTTCCA
AATCGATTGAAAAGTTTATAATGACGTTGTTTAGCCTGTTGcggtttctt
gttgttttcttGTGGATTTGATTCATCTTCCTGAAGTTCTTCTGGAACTA
CATCTTTACAACTTGCTGCATTAGAAGTTTCCTCAAACACAGCACTTGTT
GGTGCTTCTATATTGCCAGGCTGTTCAGCGTCATCTCTGTTCTCTGTGGC
GTTTGAATCTTCACCACCCATAACTTTCTCCGAATCTATTTCTGCGACCT
CATACATGTTTGACTGTTACAGCTCAAGTATAAACTAAAATAGCtggaaa
actgtttttcttttttcacattGCAGAATGAAATTGAGAGGAGAAATATA
AATGAGTTCAAATCAAAAACATACCGAATGAATctgaaaacaatcgaaac
a
Run BLAST on NCBI

transcript from alignment at scaffold_167:212332..215790-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050023 ID=TCONS_00050023|Name=TCONS_00050023|organism=Clytia hemisphaerica|type=transcript|length=3459bp|location=Sequence derived from alignment at scaffold_167:212332..215790- (Clytia hemisphaerica)
CAAGAAATCGCCATACTAGTGGAAATGCAGGTAATAATAATCTCATTCGA
AAACCATTCGAAAATCTTTTGCATATAGTAGAAATTATGCAATACTCTGG
AATAAGCTTCTATAAAAATGGAGGGCAAGTGTCACATATAGTACATAGAT
TGGAACCCCAAAATAACTATAATTAAAATTAAATTTTCCTGATGGAAATC
GACCCTTAGAAAAAACCTTTATCCCTGATTTTTTTTCATTTCTCTGGAAC
CTTCAAACCTTTCAAGACAAGAATAATTTTTATAATCAGCGACCGTAGCA
TAAAGGTAGAGTATCCAGCTACGGTGCGCAAGGTTATGGGTTCTGCTTGA
TGCTCATCAACTAAAAAGACGGATCAAGGGTAAGTGGAGAAATCCAGGAA
AATGAGTGGCGCCCTCCCCTACCTTCGGGTAGACAGCTATACGAAAAGAG
AGCCTTCGGGTCGCCCTCGACTGCGGTCGCAAACTTACTTTATAATTTGT
TTGATTTCATCACAAATTCTTCTCTGGTTTCATCAAAGGGTGGATTGATT
GACAATATCCAACATAATGTCGAAGAAACCATCATCATAGTGGAAGAATC
ACAACAACAATTACGAAAAGCTATGAAATACAAACGTCAAAACATTTTCA
CTTGTTGTTGTCCAGCATTCGTTCGAAACAGTATACATTGCTGTACCGTC
ATGTGAATATCAATCCGCCCTAGCTAGCTCAGCATAAACAGCCTTATTTG
GACAGTCATCTAACGCTATCTGGATGTCATGGACGCTACATGGATGTTGT
TTTGACGTAATGTGCTATAGTTCCTATTTAGAAATGTCCAAATCGTTGAC
CATGAGACTGATTCCATAAAGCCAATGTGCGATTTCATGTTGTACATGTT
TTTTTGATAAGCATTACATTTATAAGCATATACAGGCTCAGTTTTTGGTA
CCTAACAATAGCTCTATTGTTTTGGAACAATAAAATGCTAAACATAGTAC
TAGCCTGATATAGAGGTAGGCACTTTATAAAAAAACATGTACGTGAAGCT
CATCATGAAGTATAATTCGAACAAAATGGAAAATAGCTATACTTTTCAAA
CAGAACTAACAGTTAACGTATCGGCATATTTAGACCTTTTGGCAAAAGTG
AAAAGATGTTTAAATAAAATCATGATGATGGACACTCCCTTTAAACAGAA
ATGTTTTGCAAAATCAAGAATTATTGAGTACTGATATGGATCCAGGTATA
CTAATTTCATTTGAAAAATTCTTCAAAACCTATTTGTTTCAGGAGTATTT
TTTGTAATCATCAAAAGTCCTAATAAATAATCTAATAAATTTTTATACAA
GCAACTAATAAAATACCTTAAGGGAACTATTTTTTGCAGGAACTAATTTT
TGCGGTTCGCAGTTCAAGATTTAATATTTAATATTTGCGGGAACTTAATT
TTGCGGATTTCTCACTTGAAAGAAAATAAGAGCCGTACTGTGAATTATTC
GACCTTTCTTTTTCGCATTTGAAAAATATTTTACGGTTTGGGCCTAAATC
CGCAAAAACCGCAAAATTTAGCTCCCTTAACCAAGGAATTCCTTGCCTTA
ACATAATAAGCAATTTTTTGTGTGTGAAAATACCTATAAATACGATTCAA
TTAAATTAAGTCTGCTCATTGTCACACACCACCCTTGGTCCTTCTTATCA
GTGTAAATTTACAATTATAGTTCATTCAACATTGTGGCTGGCAGTTTTCT
TTCAAAGCAAAAGCGCGTCAATCCCTTCTACGTTATATTCCTCAAAGCAG
TTCGAATTACATCATTGTACAACAAGCTTGACAATAATTTTGTGATAGTT
GTGCCTTCTGGTACACTCTCAACGCTTTCTTGGTCAAATAGAACGAATCG
TCTTTAGGTTTCTCAGTATAAGGATCTACAAGAATGAAATCAGTCGTCTT
ATTTGCTTTTTCTTCGTCATTTTCTGATGTTGTCGATTCTTCTTGATCGA
TTTGAGAATCTTCTTCCTTGATCTCAACACCTTTATCAACTTTATCAAGG
CTTTCTACATCTGGAGATGAATTTCCATCAGTCATGAACGGGTTCTTGCC
ATCGCAACCATGTTTTTCGGTGGTGTTTTCTTCTTTCTCCAACATTTGTG
TCACATGCGTCAAACTAGATGCTTCCAATGTATCGTCAACCTCGTTGGAC
TGGTCTGGCGATTCAGTTTGGTAATCTTGATTTTGACTTTCTGCTGAAAC
CTCTGCATCCTCTTGTTGAGCATTTTGATCAACCACATTTGTAATTTCGC
AAACATCAGTTTCTTCACCAGTCAGTATACTTGATTCATCATCTTTGGGT
ATTTCACATTCGCCAGCAGTATTTCCTTGATCCTGCTCTTCCAATTCTTT
AGAGGCAGCCAACATCGAGAATCTTTTCCAATGAAATTTCTTACGTTTTT
CTGTTCCTTGTTTTGATGTTGTTTGATCGTTACCATCTTCAACAGCTTCT
TGGGTATCAGAAGCTTCCTGTACTACCGCTTTATTCTTTCGTCTCATTCT
GATTGAACGAGGAATCTTGCGGGAAAATTTCCTTTTCCCAACACCACCAG
CAGAAGCAGTAGCTTCATTCTTACTTGATTGAGGCTCTTCACTATCTGCT
TGCTGATCACCAGGAGAACCTGGAGGTTTTGATTCTTCATTCTCGGTATC
TTGGTGTGGTTCAGAATCTTCCAAAGATTCTTCTTTCTCTGGCTGAACAT
TCTCATGTTCTGCACCATTGTTAACCACTTCTTCTTCCTCAGCAGATGTG
ATGGCGACTTTGACAGGTATGCCAGTTCTTTTCCATTTGAATCTGTTTCT
CTTAGGTGGCAATGGTGGTGGTGTTTCATTCTCTTCATCTTTGGCGATTT
CTTCATCAGCAGGAGTTTCCTTGACTTCCTCTTTCGAAGTCTCGGTGATT
CTCGACAGACTGAATTCTTCATTATTATCTTGTATTTGTTCTTTAACTTC
CTCTTCTTCATTTTCTTTCGTTTTTGTTGAAGATGAAACAGTAATCTTTC
GTTTTCCAAATCGATTGAAAAGTTTATAATGACGTTGTTTAGCCTGTTGC
GGTTTCTTGTTGTTTTCTTGTGGATTTGATTCATCTTCCTGAAGTTCTTC
TGGAACTACATCTTTACAACTTGCTGCATTAGAAGTTTCCTCAAACACAG
CACTTGTTGGTGCTTCTATATTGCCAGGCTGTTCAGCGTCATCTCTGTTC
TCTGTGGCGTTTGAATCTTCACCACCCATAACTTTCTCCGAATCTATTTC
TGCGACCTCATACATGTTTGACTGTTACAGCTCAAGTATAAACTAAAATA
GCTGGAAAACTGTTTTTCTTTTTTCACATTGCAGAATGAAATTGAGAGGA
GAAATATAAATGAGTTCAAATCAAAAACATACCGAATGAATCTGAAAACA
ATCGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031689XLOC_031689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050023-exon-scaffold_167-1575043694:215761..215790TCONS_00050023-exon-scaffold_167-1575043694:215761..215790Clytia hemisphaericaexon
TCONS_00050023-exon-scaffold_167-1575043694:212332..215252TCONS_00050023-exon-scaffold_167-1575043694:212332..215252Clytia hemisphaericaexon
TCONS_00050023-exon-scaffold_167-1510915933:215761..215790TCONS_00050023-exon-scaffold_167-1510915933:215761..215790Clytia hemisphaericaexon
TCONS_00050023-exon-scaffold_167-1510915933:212332..215252TCONS_00050023-exon-scaffold_167-1510915933:212332..215252Clytia hemisphaericaexon
TCONS_00050023-exon-scaffold_167-1491911889:215761..215790TCONS_00050023-exon-scaffold_167-1491911889:215761..215790Clytia hemisphaericaexon
TCONS_00050023-exon-scaffold_167-1491911889:212332..215252TCONS_00050023-exon-scaffold_167-1491911889:212332..215252Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:212332..215790 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156788	0.139568	0.103078	0.0444516	0.615968	0.733646	16.8769	19.9489	3.40723	2.93599	2.78807	1.42622	1.4682	1.97877	0.580346	0.806669	0.532927	0.966698	0.994358	0.95802	2.02387	1.77305	0.982171	1.06366	0.246069	0.626909	0.893932	0.384819	0.499866	0.490295
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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