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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050022 ID=TCONS_00050022|Name=TCONS_00050022|organism=Clytia hemisphaerica|type=transcript|length=2017bp
GTTTTGCAAAATCAAGAATTATTGAGTACTGATATGGATCCAGGTATAct
aatttcatttgaaaaattcttcaaaacctATTTGTTTCAGGAGTATTTTT
TGTAATCATCAAAAGTCCTAATAAATAATCTAATAAATTTTTATACAAGC
AACTAataaaATAATAAGCAATTTTTTGTGTGTGAAAATACCTATAAATA
CGATTCAATTAAATTAAGTCTGCTCATTGTCACACACCACCCTTGGTCCT
TCTTATCAGTGTAAATTTACAATTATAGTTCATTCAACATTGTGGCTGGC
AgttttctttcaaagcaaaagcGCGTCAATCCCTTCTACGTTATATTCCT
CAAAGCAGTTCGAATTACATCATTGTACAACAAGCTTGACAATAATTTTG
TGATAGTTGTGCCTTCTGGTACACTCTCAACGCTTTCTTGGTCAAATAGA
ACGAATCGTCTTTAGGTTTCTCAGTATAAGGATCTACAAGAATGAAATCA
GTCGTCTTATTTGCTTTTTCTTCGTCATTTTCTGATGTTGTCGATTCTTC
TTGATCGATTTGAGAATCTTCTTCCTTGATCTCAACACCTTTATCAACTT
TATCAAGGCTTTCTACATCTGGAGATGAATTTCCATCAGTCATGAACGGG
TTCTTGCCATCGCAACCATGTTTTTCGGTGGTGTTTTCTTCTTTCTCCAA
CATTTGTGTCACATGCGTCAAACTAGATGCTTCCAATGTATCGTCAACCT
CGTTGGACTGGTCTGGCGATTCAGTTTGGTAATCTTGATTTTGACTTTCT
GCTGAAACCTCTGCATCCTCTTGTTGAGCATTTTGATCAACCACATTTGT
AATTTCGCAAACATCAGTTTCTTCACCAGTCAGTATACTTGATTCATCAT
CTTTGGGTATTTCACATTCGCCAGCAGTATTTCCTTGATCCTGCTCTTCC
AATTCTTTAGAGGCAGCCAACATCGAGAATCTTTTCCAATGAAATTTCTT
ACGTTTTTCTGTtccttgttttgatgttgtttgaTCGTTACCATCTTCAA
CAGCTTCTTGGGTATCAGAAGCTTCCTGTACTACCGCTTTATTCTTTCGT
CTCATTCTGATTGAACGAGGAATCTTGCGGGAAAATTTCCTTTTCCCAAC
ACCACCAGCAGAAGCAGTAGCTTCATTCTTACTTGATTGAGGCTCTTCAC
TATCTGCTTGCTGATCACCAGGAGAACCTGGAGGTTTTGATTCTTCATTC
TCGGTATCTTGGTGTGGTTCAGAATCTTCCAAAGATTCTTCTTTCTCTGG
CTGAACATTCTCATGTTCTGCACCATTGTTAACCACTTCTTCTTCCTCAG
CAGATGTGATGGCGACTTTGACAGGTATGCCAGTTCTTTTCCATTTGAAT
CTGTTTCTCTTAGGTGGCAATGGTGGTGGTGTTTCATTCTCTTCATCTTT
GGCGATTTCTTCATCAGCAGGAGTTTCCTTGACTTCCTCTTTCGAAGTCT
CGGTGATTCTCGACAGACTGAATTCTTCATTATTATCTTGTATTTGTTCT
TTAACTtcctcttcttcattttctttcgtttttgttgAAGATGAAACAGT
AATCTTTCGTTTTCCAAATCGATTGAAAAGTTTATAATGACGTTGTTTAG
CCTGTTGcggtttcttgttgttttcttGTGGATTTGATTCATCTTCCTGA
AGTTCTTCTGGAACTACATCTTTACAACTTGCTGCATTAGAAGTTTCCTC
AAACACAGCACTTGTTGGTGCTTCTATATTGCCAGGCTGTTCAGCGTCAT
CTCTGTTCTCTGTGGCGTTTGAATCTTCACCACCCATAACTTTCTCCGAA
TCTATTTCTGCGACCTCATACATGTTTGACTGTTACAGCTCAAGTATAAA
CTAAAATAGCtggaaaactgtttttcttttttcacattGCAGAATGAAAT
TGAGAGGAGAAATATAAATGAGTTCAAATCAAAAACATACCGAATGAATc
tgaaaacaatcgaaaca Run BLAST on NCBI transcript from alignment at scaffold_167:212332..214588- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050022 ID=TCONS_00050022|Name=TCONS_00050022|organism=Clytia hemisphaerica|type=transcript|length=2257bp|location=Sequence derived from alignment at scaffold_167:212332..214588- (Clytia hemisphaerica)
GTTTTGCAAAATCAAGAATTATTGAGTACTGATATGGATCCAGGTATACT
AATTTCATTTGAAAAATTCTTCAAAACCTATTTGTTTCAGGAGTATTTTT
TGTAATCATCAAAAGTCCTAATAAATAATCTAATAAATTTTTATACAAGC
AACTAATAAAATACCTTAAGGGAACTATTTTTTGCAGGAACTAATTTTTG
CGGTTCGCAGTTCAAGATTTAATATTTAATATTTGCGGGAACTTAATTTT
GCGGATTTCTCACTTGAAAGAAAATAAGAGCCGTACTGTGAATTATTCGA
CCTTTCTTTTTCGCATTTGAAAAATATTTTACGGTTTGGGCCTAAATCCG
CAAAAACCGCAAAATTTAGCTCCCTTAACCAAGGAATTCCTTGCCTTAAC
ATAATAAGCAATTTTTTGTGTGTGAAAATACCTATAAATACGATTCAATT
AAATTAAGTCTGCTCATTGTCACACACCACCCTTGGTCCTTCTTATCAGT
GTAAATTTACAATTATAGTTCATTCAACATTGTGGCTGGCAGTTTTCTTT
CAAAGCAAAAGCGCGTCAATCCCTTCTACGTTATATTCCTCAAAGCAGTT
CGAATTACATCATTGTACAACAAGCTTGACAATAATTTTGTGATAGTTGT
GCCTTCTGGTACACTCTCAACGCTTTCTTGGTCAAATAGAACGAATCGTC
TTTAGGTTTCTCAGTATAAGGATCTACAAGAATGAAATCAGTCGTCTTAT
TTGCTTTTTCTTCGTCATTTTCTGATGTTGTCGATTCTTCTTGATCGATT
TGAGAATCTTCTTCCTTGATCTCAACACCTTTATCAACTTTATCAAGGCT
TTCTACATCTGGAGATGAATTTCCATCAGTCATGAACGGGTTCTTGCCAT
CGCAACCATGTTTTTCGGTGGTGTTTTCTTCTTTCTCCAACATTTGTGTC
ACATGCGTCAAACTAGATGCTTCCAATGTATCGTCAACCTCGTTGGACTG
GTCTGGCGATTCAGTTTGGTAATCTTGATTTTGACTTTCTGCTGAAACCT
CTGCATCCTCTTGTTGAGCATTTTGATCAACCACATTTGTAATTTCGCAA
ACATCAGTTTCTTCACCAGTCAGTATACTTGATTCATCATCTTTGGGTAT
TTCACATTCGCCAGCAGTATTTCCTTGATCCTGCTCTTCCAATTCTTTAG
AGGCAGCCAACATCGAGAATCTTTTCCAATGAAATTTCTTACGTTTTTCT
GTTCCTTGTTTTGATGTTGTTTGATCGTTACCATCTTCAACAGCTTCTTG
GGTATCAGAAGCTTCCTGTACTACCGCTTTATTCTTTCGTCTCATTCTGA
TTGAACGAGGAATCTTGCGGGAAAATTTCCTTTTCCCAACACCACCAGCA
GAAGCAGTAGCTTCATTCTTACTTGATTGAGGCTCTTCACTATCTGCTTG
CTGATCACCAGGAGAACCTGGAGGTTTTGATTCTTCATTCTCGGTATCTT
GGTGTGGTTCAGAATCTTCCAAAGATTCTTCTTTCTCTGGCTGAACATTC
TCATGTTCTGCACCATTGTTAACCACTTCTTCTTCCTCAGCAGATGTGAT
GGCGACTTTGACAGGTATGCCAGTTCTTTTCCATTTGAATCTGTTTCTCT
TAGGTGGCAATGGTGGTGGTGTTTCATTCTCTTCATCTTTGGCGATTTCT
TCATCAGCAGGAGTTTCCTTGACTTCCTCTTTCGAAGTCTCGGTGATTCT
CGACAGACTGAATTCTTCATTATTATCTTGTATTTGTTCTTTAACTTCCT
CTTCTTCATTTTCTTTCGTTTTTGTTGAAGATGAAACAGTAATCTTTCGT
TTTCCAAATCGATTGAAAAGTTTATAATGACGTTGTTTAGCCTGTTGCGG
TTTCTTGTTGTTTTCTTGTGGATTTGATTCATCTTCCTGAAGTTCTTCTG
GAACTACATCTTTACAACTTGCTGCATTAGAAGTTTCCTCAAACACAGCA
CTTGTTGGTGCTTCTATATTGCCAGGCTGTTCAGCGTCATCTCTGTTCTC
TGTGGCGTTTGAATCTTCACCACCCATAACTTTCTCCGAATCTATTTCTG
CGACCTCATACATGTTTGACTGTTACAGCTCAAGTATAAACTAAAATAGC
TGGAAAACTGTTTTTCTTTTTTCACATTGCAGAATGAAATTGAGAGGAGA
AATATAAATGAGTTCAAATCAAAAACATACCGAATGAATCTGAAAACAAT
CGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050022-exon-scaffold_167-1575043694:214429..214588 | TCONS_00050022-exon-scaffold_167-1575043694:214429..214588 | Clytia hemisphaerica | exon |
| TCONS_00050022-exon-scaffold_167-1575043694:212332..214188 | TCONS_00050022-exon-scaffold_167-1575043694:212332..214188 | Clytia hemisphaerica | exon |
| TCONS_00050022-exon-scaffold_167-1510915933:214429..214588 | TCONS_00050022-exon-scaffold_167-1510915933:214429..214588 | Clytia hemisphaerica | exon |
| TCONS_00050022-exon-scaffold_167-1510915933:212332..214188 | TCONS_00050022-exon-scaffold_167-1510915933:212332..214188 | Clytia hemisphaerica | exon |
| TCONS_00050022-exon-scaffold_167-1491911889:214429..214588 | TCONS_00050022-exon-scaffold_167-1491911889:214429..214588 | Clytia hemisphaerica | exon |
| TCONS_00050022-exon-scaffold_167-1491911889:212332..214188 | TCONS_00050022-exon-scaffold_167-1491911889:212332..214188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:212332..214588 - |
Blast
The following BLAST results are available for this feature:
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