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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050013 ID=TCONS_00050013|Name=TCONS_00050013|organism=Clytia hemisphaerica|type=transcript|length=2205bp
CGGGAATTAAAATGGCCACGATTTCACGTTCCTTTTGCTTTGCCTATttc
ttctgttttctttttttagtaaAGTTGAAGTTCAAGGAATGTCCTCTCTT
GCTAGAAAATTTGCCTTGCAAAAGAAGAGTTCCCAAGATGCAGAAAAACA
TCGTTGTCAAAAGTGTTTGCAATACGGCCATTGGACATATGAATGCACCA
ACCAACGAAAATATGTCCAAAGAGAATCTAGATCAAAGCAACTCACTAAG
AAGATTAAAGCCatgaaagagaaagaaaataaaagTGTACAAGATATGAT
AAAAGAGAAGGAGAAGACGTCAGATGCAGACGATGAGAATGACAGCAGCA
GTAGCAGTAGTGACTCGTCATCTTCCTCATCTTCATCTTCCAGCAGTTCC
AGCTCCTCTGATAGTGAACAAGAcgaccaaaatagaaaatcttcaaagaG
GAGAAAGAAAAACAGTAGTTCTTATCGTCGTAAAGAGAGATGATGCGAAT
AAACTTTGCTTGTATTGGTGTAATTGTTCTAAACTTACACTGTGGAATAT
CAGTTCGTTGTTGGCTTACATACAATAAAAAGATTGGCTTCTACAGCTTA
ATACCTTTCTAAGATAAAAAACAGTTCTGGTATTGCTTCACGATGCATGG
ACAGAAATTTCCGCCAGAAACTCTTATCGTGAGGAAATTTCTGATGAAGA
ATGTGAACAATGAGTTCAGATGAGTTTTATCCATCATGACTATCTAAATT
ACTAATTCTTGGCATGAAggctatattttttgaaaggaaCCATTTCTTAG
GACTTAAGATCGATTTCATATGCTTAGAAAAAAGTACAGACGTTCATAAA
ttcgtgatatgcaccattgcaatgtcttccacagacccaacagctgattg
gttgagagtgacgtattgactgactttacgtcacttacaaccaatcaggt
AATGGGTCCgtaatgtaatgtcagaagacattgcaatggtgcatattatg
aataaaGGAAATGGAATCCTTTATATCTTTTCGGTAATCAGAATAAAGGA
TCTTTCTTTAGAATCGTCAAATAATTTCTTATTGAATAGATTATTTAATT
CCCACAGCAGttaaattaacttttttcttcaattacTCAATTACTCCAGG
tcccaaataaacgcccccccctgcttattaattttagaccttattaggac
ccccctcgtttattaattttcaagaatattttcagctgtcaaagagaatg
aaggccccttattttgctctaaataacctgattttagcctatatttacct
tatttttgggttttcagaaatacattttccaaccccccggcaattaggtc
tccccccgtttattaaaatctcgaaacccccgtttatttggaacctaaga
ctAATTAATTACTCGTAAATGCGATCTGGTAGGATTACCTCAAAAAAGAT
CCCAACCATGAAATTAATGTGCCTGCATGGGTCCTAGAACCAAAAGAAAA
ACCCTAAATCTACttaaggcgtacaaactttcgcgagaagaaactttcgc
aaggtcgaaaaatcgcgaatttgacaaaaaaaaatttttagtaGAAAATT
CATGTTTTCGGTACATAAAACTAGATTTTTGATCGTTCAAATGTATTCAA
ACCACAATTGATGGACTTTTACACAATATCTACATTAAATTTTACCCTTG
TTATCATCaaagaggaaaatttgagtAAGTTTAAAGTTTTCGAAAAGTTT
TGGACCCATCTCACGATGACATAAATCTTCAATACAAATACCtacaaaca
attaaaaaaaaaatttatttaggcTATTTAATCTGAATGATcatgaaaag
ttaaaaaggaaaatgagGTTGTTTTAATTTCGTCAATTAGATCCCTCAAA
TGGTCAGAGACCGCCCAAAATATGCCATATTTCCTGTTGGCGTCATCAAC
TACCCAGACGATTTACAGTTTTAATTTAGGCCAAAGATCGGGTCTCGAAA
AGTACTAACTGAGCTGAAAATGATATGGTGCATAGGCTCTTTTTGGCTAA
ATCGCGAGATATTTGGGTTTTAAGATCAATGATTTTTGATTAGTCGGCAA
AACTTTTTGTGCATCAGttgtaaaatagtaaaaaaaatatgtaggggcaa
attttttattttatgcaATTTATCAAGAAAAGACTTATAATTGACTAATG
CAAGG Run BLAST on NCBI protein sequence of TCONS_00050013-protein >TCONS_00050013-protein ID=TCONS_00050013-protein|Name=TCONS_00050013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MSSLARKFALQKKSSQDAEKHRCQKCLQYGHWTYECTNQRKYVQRESRSK
QLTKKIKAMKEKENKSVQDMIKEKEKTSDADDENDSSSSSSDSSSSSSSS
SSSSSSSDSEQDDQNRKSSKRRKKNSSSYRRKER Run BLAST on NCBI transcript from alignment at scaffold_167:65720..70977- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050013 ID=TCONS_00050013|Name=TCONS_00050013|organism=Clytia hemisphaerica|type=transcript|length=5258bp|location=Sequence derived from alignment at scaffold_167:65720..70977- (Clytia hemisphaerica)
CGGGAATTAAAATGGCCACGATTTCACGTTCCTTTTGCTTTGCCTATTTC
TTCTGTTTTCTTTTTTTAGTAAAGTTGAAGTTCAAGGAATGTCCTCTCTT
GCTAGAAAATTTGCCTTGCAAAAGAAGAGGTTGGTATATTTTATGTTTTA
TTAGTCTTTGAAATTTGTTTCAAAACAAACAGGCAGTATGGGTATATCTC
ACTAGTCGGACACTTTTTACATTTTAGTGTCGTCTGACACGTACATATAA
CAAAACAGTCCGAATCCAGACAAAATGGATATAAACTGATACGATAGACG
CATAACGCCTATTTGATGGCAAATCTCCAAGGTTCAATGAGTTTAGAAAG
AACAATGTCAATGCTGGTGTAAGTGCAAGAGCAAATTATTTTAGGAATCA
TGATTATATCTTATATCCTTGTCAAGACCCAATGCCAAGGGCAGTAACTT
TCGATGGGTCAGGACCCTGTTTTCATGTATACCCGGGGGGGGGGCACTGG
GTTTGCGGACTGACGGTATGTGCGGGCCAAAAATTGGCTTTTAAAATTAC
ACCCTTACAGTGCATGCAGCAAAAATCAGTGAAAATCATACCCTTAGAGT
GCATTTTCCCCCAAATTTTCGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGACCCTTACAGTGC
ATTTTAAACATATTGGAAAAGGTACCCTTAGGACCCGCACATACCCGTCG
GTCCTTTTGCCCAGCTGCCCCCCCCCATCAATTGTCTCCATCGTTTCGGT
AGACTCTGGAGTTTATGGATGGAATATCTTGGTTAGGCCGATGAAATTTA
CATATGAGTTTACCGTCGGCCGCCCGCATCTCTAAAAAGCACCCGCATGA
AAATTTCATTATCTTCAAAATTCCTAAAATTTTCATTATTTCTATAGTTC
TTTATGACTACAACCTCCATCGTTGTTAAAATCGTCTCTACGCAGGATTC
CCTCTACGCGTGACCTTTTTCCCAGAGTAAACACGGGTAAACAAAGAAGA
TTTTTTACAGAAAATGTGACCGCCCTCAATCCTACAACTACAGTGGGCGT
CACGCCCATCTATCTGCCTAACCGCCCTGGCGGCCATTTTAGTTTTTTGC
CAAATCTAGCGCCACTGTAGCAATCGATCTTTATTTTTTGTTCGCAAAAC
ATGCGGAGGGTTGAAGCGAAGCAAAATTTTTTATTTTGAGAGAGAATGGT
TAGCAGAAATGGTGGATAAGGTGCTGTTGGGAAAATAATGAATAATGAAT
AATGAAATCATGCCGCATCTATTTTTGGGTAAGTTCACGACGGTAAACTC
ATATGTAAATTTCATCGGCCTTAGAAACAGAGAGTATACACCTACAGTGT
TGTTGGTTCAAAACGTCAGCTTTATCTTTGTCATTTACCACAAAGTTATC
TCACAGATTCTTTCTTTTGATGCATTTGCTGATTTGTAGAGCTTCTTTTT
GTTTTATTTAGCTTTTTTAGCTAATTTAGCTCTAGCGTTTTTGTCTTGTG
CTGACTGACATGCCCTTTTGCATTATTTTACAATTGCTTTGTATTTGTCC
CAGTCAGTATATGGTGAAGATCAGAGATCTGACCTCAAGGAGAGAAAGTG
TTGAAAATACTAAATAAAATAAAGATGAAACATAAAAAGGGACTAATATT
TTTATAATTATGTTTTTTCCATTTTTTTTGAATTTTTCTAAATATATAAA
TCAAACCAATCAAACATTCTGTCAAGAAATGAGAATTTTATGCGAAAAAG
AACCAACAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAATACAAAGAAACAAAAAAGGGGTTAAACAACAGACA
AAACAAACAAGTTCAAAGAGACAAGAACAAGACAAACGACAAAAAAAACA
CAAATTTTCAAAAAGTTCGACACCTAAAGTCCGAAATGCCGTGCAGTCGT
CCGCACGGGAAAGAACGAAAAAGAAATACACAGCTTTGTGCATTTCCCTT
GTTTGTAAAGACGTTTTTTGCGCTGTGATAATTGTTTGCACTTTCTGGTT
ATCCAGCTTTGGGAAAGCTGTTTGGTTGAGATGGTTAAACTAGGCTTAGA
TAGCCCCCAGCAGTTTGCGTGAATGTGTGAATGGGCTTTTTCACTTGCGT
GAATGCGTGAATTGGAAAGCTTTGCGCGAACAAAAGTTGCGTGAATTGCA
AAAAAATATTGCATGAATGCGTGAATTGAAGATCCACTGAGATACACACT
ATGAATTTGTAGAAATGAAACTGTTTTTATATCATGTTTTAGTTCCCAAG
ATGCAGAAAAACATCGTTGTCAAAAGTGTTTGCAATACGGCCATTGGACA
TATGAATGCACCAACCAACGAAAATATGTCCAAAGAGAATCTAGATCAAA
GCAACTCACTAAGAAGATTAAAGCCATGAAAGAGAAAGAAAATAAAAGGT
AATTTTTTGAAACTGTAGTTCAGATATTTGTTCAAACTTTTTATAGTTTT
AGGAGTTTTAGGGACTCGATTAAATGTTTCCTGAATAAGGATAAAAGTAA
TTATGCTGAATTAAAGCTTGATGCAAAATCCTTTTGATATTATTATTGTT
GTTTTAAACGAGCTCAATTTCCCAATGGTAGGACCCCTTGAATTCTATAG
AAATTATTGGGTTGCTGAAATAATGATAGGTAAGAAATTTCATTTAGTTG
TTTTATTTAAGTAAAATCTTTTTATTTACTTTAAAAGTGTACAAGATATG
ATAAAAGAGAAGGAGAAGACGTCAGATGCAGACGATGAGAATGACAGCAG
CAGTAGCAGTAGTGACTCGTCATCTTCCTCATCTTCATCTTCCAGCAGTT
CCAGCTCCTCTGATAGTGAACAAGACGACCAAAATAGAAAATCTTCAAAG
AGGAGAAAGAAAAACAGTAGTTCTTATCGTCGTAAAGAGAGATGATGCGA
ATAAACTTTGCTTGTATTGGTGTAATTGTTCTAAACTTACACTGTGGAAT
ATCAGTTCGTTGTTGGCTTACATACAATAAAAAGATTGGCTTCTACAGCT
TAATACCTTTCTAAGATAAAAAACAGTTCTGGTATTGCTTCACGATGCAT
GGACAGAAATTTCCGCCAGAAACTCTTATCGTGAGGAAATTTCTGATGAA
GAATGTGAACAATGAGTTCAGATGAGTTTTATCCATCATGACTATCTAAA
TTACTAATTCTTGGCATGAAGGCTATATTTTTTGAAAGGAACCATTTCTT
AGGACTTAAGATCGATTTCATATGCTTAGAAAAAAGTACAGACGTCCATA
AATTCGTGATANTGGCATGAAGGCTATATTTTTTGAAAGGAACCATTTCT
TAGGACTTAAGATCGATTTCATATGCTTAGAAAAAAGTACAGACGTTCAT
AAATTCGTGATATGCACCATTGCAATGTCTTCCACAGACCCAACAGCTGA
TTGGTTGAGAGTGACGTATTGACTGACTTTACGTCACTTACAACCAATCA
GGTAATGGGTCCGTAATGTAATGTCAGAAGACATTGCAATGGTGCATATT
ATGAATAAAGGAAATGGAATCCTTTATATCTTTTCGGTAATCAGAATAAA
GGATCTTTCTTTAGAATCGTCAAATAATTTCTTATTGAATAGATTATTTA
ATTCCCACAGCAGTTAAATTAACTTTTTTCTTCAATTACTCAATTACTCC
AGGTCCCAAATAAACGCCCCCCCCTGCTTATTAATTTTAGACCTTATTAG
GACCCCCCTCGTTTATTAATTTTCAAGAATATTTTCAGCTGTCAAAGAGA
ATGAAGGCCCCTTATTTTGCTCTAAATAACCTGATTTTAGCCTATATTTA
CCTTATTTTTGGGTTTTCAGAAATACATTTTCCAACCCCCCGGCAATTAG
GTCTCCCCCCGTTTATTAAAATCTCGAAACCCCCGTTTATTTGGAACCTA
AGACTAATTAATTACTCGTAAATGCGATCTGGTAGGATTACCTCAAAAAA
GATCCCAACCATGAAATTAATGTGCCTGCATGGGTCCTAGAACCAAAAGA
AAAACCCTAAATCTACTTAAGGCGTACAAACTTTCGCGAGAAGAAACTTT
CGCAAGGTCGAAAAATCGCGAATTTGACAAAAAAAAATTTTTAGTAGAAA
ATTCATGTTTTCGGTACATAAAACTAGATTTTTGATCGTTCAAATGTATT
CAAACCACAATTGATGGACTTTTACACAATATCTACATTAAATTTTACCC
TTGTTATCATCAAAGAGGAAAATTTGAGTAAGTTTAAAGTTTTCGAAAAG
TTTTGGACCCATCTCACGATGACATAAATCTTCAATACAAATACCTACAA
ACAATTAAAAAAAAAATTTATTTAGGCTATTTAATCTGAATGATCATGAA
AAGTTAAAAAGGAAAATGAGGTTGTTTTAATTTCGTCAATTAGATCCCTC
AAATGGTCAGAGACCGCCCAAAATATGCCATATTTCCTGTTGGCGTCATC
AACTACCCAGACGATTTACAGTTTTAATTTAGGCCAAAGATCGGGTCTCG
AAAAGTACTAACTGAGCTGAAAATGATATGGTGCATAGGCTCTTTTTGGC
TAAATCGCGAGATATTTGGGTTTTAAGATCAATGATTTTTGATTAGTCGG
CAAAACTTTTTGTGCATCAGTTGTAAAATAGTAAAAAAAATATGTAGGGG
CAAATTTTTTATTTTATGCAATTTATCAAGAAAAGACTTATAATTGACTA
ATGCAAGG Coding sequence (CDS) from alignment at scaffold_167:65720..70977- >TCONS_00050013 ID=TCONS_00050013|Name=TCONS_00050013|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_167:65720..70977- (Clytia hemisphaerica)
TGTACAAGATATGATAAAAGAGAAGGAGAAGACGTCAGATGCAGACGATG
AGAATGACAGCAGCAGTAGCAGTAGTGACTCGTCATCTTCCTCATCTTCA
TCTTCCAGCAGTTCCAGCTCCTCTGATAGTGAACAAGACGACCAAAATAG
AAAATCTTCAAAGAGGAGAAAGAAAAACAGTAGTTCTTATCGTCGTAAAG
AGAGATGATTCCCAAGATGCAGAAAAACATCGTTGTCAAAAGTGTTTGCA
ATACGGCCATTGGACATATGAATGCACCAACCAACGAAAATATGTCCAAA
GAGAATCTAGATCAAAGCAACTCACTAAGAAGATTAAAGCCATGAAAGAG
AAAGAAAATAAAAGATGTCCTCTCTTGCTAGAAAATTTGCCTTGCAAAAG
AAGAGTGTACAAGATATGATAAAAGAGAAGGAGAAGACGTCAGATGCAGA
CGATGAGAATGACAGCAGCAGTAGCAGTAGTGACTCGTCATCTTCCTCAT
CTTCATCTTCCAGCAGTTCCAGCTCCTCTGATAGTGAACAAGACGACCAA
AATAGAAAATCTTCAAAGAGGAGAAAGAAAAACAGTAGTTCTTATCGTCG
TAAAGAGAGATGATTCCCAAGATGCAGAAAAACATCGTTGTCAAAAGTGT
TTGCAATACGGCCATTGGACATATGAATGCACCAACCAACGAAAATATGT
CCAAAGAGAATCTAGATCAAAGCAACTCACTAAGAAGATTAAAGCCATGA
AAGAGAAAGAAAATAAAAGATGTCCTCTCTTGCTAGAAAATTTGCCTTGC
AAAAGAAGAGTGTACAAGATATGATAAAAGAGAAGGAGAAGACGTCAGAT
GCAGACGATGAGAATGACAGCAGCAGTAGCAGTAGTGACTCGTCATCTTC
CTCATCTTCATCTTCCAGCAGTTCCAGCTCCTCTGATAGTGAACAAGACG
ACCAAAATAGAAAATCTTCAAAGAGGAGAAAGAAAAACAGTAGTTCTTAT
CGTCGTAAAGAGAGATGATTCCCAAGATGCAGAAAAACATCGTTGTCAAA
AGTGTTTGCAATACGGCCATTGGACATATGAATGCACCAACCAACGAAAA
TATGTCCAAAGAGAATCTAGATCAAAGCAACTCACTAAGAAGATTAAAGC
CATGAAAGAGAAAGAAAATAAAAGATGTCCTCTCTTGCTAGAAAATTTGC
CTTGCAAAAGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050013-exon-scaffold_167-1575043694:70849..70977 | TCONS_00050013-exon-scaffold_167-1575043694:70849..70977 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1575043694:68030..68185 | TCONS_00050013-exon-scaffold_167-1575043694:68030..68185 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1575043694:67257..67740 | TCONS_00050013-exon-scaffold_167-1575043694:67257..67740 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1575043694:65720..67155 | TCONS_00050013-exon-scaffold_167-1575043694:65720..67155 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1510915933:70849..70977 | TCONS_00050013-exon-scaffold_167-1510915933:70849..70977 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1510915933:68030..68185 | TCONS_00050013-exon-scaffold_167-1510915933:68030..68185 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1510915933:67257..67740 | TCONS_00050013-exon-scaffold_167-1510915933:67257..67740 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1510915933:65720..67155 | TCONS_00050013-exon-scaffold_167-1510915933:65720..67155 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1491911889:70849..70977 | TCONS_00050013-exon-scaffold_167-1491911889:70849..70977 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1491911889:68030..68185 | TCONS_00050013-exon-scaffold_167-1491911889:68030..68185 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1491911889:67257..67740 | TCONS_00050013-exon-scaffold_167-1491911889:67257..67740 | Clytia hemisphaerica | exon |
| TCONS_00050013-exon-scaffold_167-1491911889:65720..67155 | TCONS_00050013-exon-scaffold_167-1491911889:65720..67155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:65720..70977 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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