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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050011 ID=TCONS_00050011|Name=TCONS_00050011|organism=Clytia hemisphaerica|type=transcript|length=4544bp
NGGTGGATGATTCGTAGTCACCTGCTGAAGCATAATCACTTTCAGGGTCT
CTAGTATTTTCAGCAAGCTCAGTTCTGAATTGTGATCGTTTATTTCTGAT
TGGCGATGCTGGCTTTCGAAAGGAGCTGAGGATGTATTTCATTACACGTT
GAGTTTCTTCATCCTTAATTATCAATGGAGATTCTTCTTTGTTGTTTGGG
TCGGTACCTCGAACTGGTGAAATCATCAAAGGATCAAGAATCTCAGGATC
TTGGGAAGAACGAGATGACCGTCCACTGTTTCTGCTATTCTTCATATCTC
GTTGTCTCTCAACAATATGTCGAGATTCGTTAGTTTCTTCGTCATTGATA
TGGAGATCTGTTTGACTTGGTCGAATTTCAACCTTGATGACTTCGTTCTC
GGTATTTGTAGAATATTTCTTCTCCCTTGTCAATTTGATTGGGCTTTCAG
GTTTGGTAATCTTGGATTTATCTTGCAGCCGTTGAGCTTTTGTTAGGAGA
TCTCGATTCTGTTGCTGGGATTTCGATTGCAGAAACTTTGCTTGAGGGTT
TTGATTCTGTTGTTGGGCCTTAGAAGGTTGAAATTTGGCTTCGAGATCTT
GATTATATTGCTGGGTTTCAGATTGCTGATAATTGGCTCGGAGGTGTTGA
ATCTTTTGTTGAGTTGTAGATTGCTGATAATTTGCTCGGAGGTTTTGATT
CTGTTCCTGGGTTTCAGATTGCTGAGAATTGGCTCGGAGGTGTTGACTCT
GTTGTTGGGTTTCAGATTGCTGAGAATTGACTCGGAGGTGTTGAATCTTT
TGTTGAGTTGTAGATTGCTGAGAATTGGCTCGGAGGTGTTGAATCTTTTG
TTGAGTTGTAGATTGCTGAGAATTGGCTCGGCTGTTTTGATTCTGTTGCT
GAGTTTCGGATTGCTGGGATTTGGTTCGAAGGTGTTGAATCTTTTGTTGG
GTTGTAGATTGCTGAGAATTGGCTCGAAGGTTTTGATTCTGCTTTTGGGC
TTTAGATTGTCGGAGATTAAGGATAACTGATGTAAAGTAGGTTTCACTGT
CTGCATTGATGTTCAAAGAATGTGTCTTTCGGGAAGAGGAAATTGTTCTT
TGAGATGATCGACTTGCAGTACTAGCTCCATCATTGAATCGCAAAGCTTT
CAACTCGGCGTCACTTGTATCACTAATTAATGATTCGTCACCTGATGATA
ATTCAGCTACACACTGATTGAATTTAACAGAAGAAGGCCTCGTTCCTTCG
ATATCAGACCTGTCACTTTCTGGGTTGACAAGAGAATCCAATACATTTCT
GTATGAAACCAAAGCAGTATCGTCCGTCTGTTTTCCCAGAGCCATTGAAA
GGAGAGAGCGTTGATTGCTAGTAGTTCTCGATTTTGATTCATCCGAAGCT
GAGGAACTGGTTTGGGTTACACTGGAAGAATCTTTGATTTTGAGATCTAT
ACATTTGCCTTCCAATAATTCGTTAGAGGTTTGTTTCTTCTCAGATTGAC
GGATGTTTGATTCTTTCAAGAAGGTAGATGATGTACTTGGTGCAACTTCA
GAGGAAGTTTTGGAATTGGACTTTCCTGTGACGGATGCTGATTTGGTAGG
TTTCGACTTTGTCTTGTTGGTTTTTGACTTCCGTTTGGTTTTCTTCTTGG
CGCGAGGAGTAATTTTATAAATATCCTTTCTTTCGATGCTGGCAAAAGGA
TATGGTTTCATTATATTCAGCGTNTAAATATCCTTTCTTTCGATGCTGGC
AAAAGGATATGGTTTCATTATATTCAGCGTTTGTTCTTTTTCATTCGAAA
TCGGCTTTGACGGCAACGAGGTTTGTTTATTGCGGATCTTATCGTAATAG
CTTAGAGGGGCAGGGCTGGTAGGTTTGGCAAGACCACCATGGGTTTGAAT
ACTTCCTGCTACATCAATGTTTGATTTGGCATCAATAACCTCAGCCACGT
CGTTCTTTAGGGGTTCCACTGGTGGCTGTTTGGAATGCAGTGGCTCAGGA
GTGCTGAGACAAGATGGAAATTGTATATCTACAACATCTATTTCTTGACT
CTCATCACTATCTTGGTAAAGGGTGGTACTGGCAAATGAGTCTAAGCTGT
CGGAGGACAATTCTGATGCAACAATAAGGTCTACATCAATTTCTTCATTG
GGAATTGGATCAACAAGAGCTTTATTGAACATCCAAAGAGTTTCGAGGCC
AAGGTGTGGATAAGGAACAAGATAACTCGCCAAATTGATTGGTGGATTGT
TCGATTGCAACATGTTTCTCTTGCAAACAAATGGATNAGGCCAAGGTGTG
GATAAGGAACAAGATAACTCGCCAAATTGATTGGTGGATTGTTCGATTGC
AACATGTTTCTCTTGCAAACAAATGGATCCTCAAAGATAAAAGATTCATC
GCCACTGCTATCGTCACAAGTGGTGTTGAATGTAGGTAGTTGCTGTCTTT
GGAAAACAATATGGTAAGGAATCACAAACAACTGTGATTTGAAACTGATC
AATATCTCATCCAGATGGCTCAGAAACAATGCATACTTCAAGGTGTTGTC
AAACTTGATTTCCACGAGTAAGACTTTGCTAAGATTCCATACCCTGACAT
AATTATCTGAACCAACAGAGCAGAATATTTGACGGGTATCAGACAAATCA
AGACTCACAATATGTCCATCGTGTTCCTTCATTGGGTTAGACTTTAGCAT
TTTGTGAGTTTCTTTGTCGACATCATTTTGGAATATGGTTTCAGTGTGAA
TGTGACCAGTAGAATAACCAACGACAATCTGAAGATTTTTGAATACAAAC
TGTGTAAAGTCTTCAAAGAAGAACATCTGGTGACAACATTCAAGGGTAAC
AACATTCCAAATACGAACCATTATCCCATTGATGGTGTCGATAACAGCCA
ATAAGTAAGTTACTGTAGACAAATAATCAACCCTTAAGTTGACAACTGGA
CTTGTTGGATGAGCTTTGAGTGACTTGACTATCAAGCCGCGTTGACAAGG
ATCAAGAAAGCAAATCAAACCATTGCTCAGTCCACACAGTAGGAAACCAA
AGTTAAATAAATCCTGGTCGGATAATGAGTCAGTATTGAAAACTTCCCTC
TTTATTGTTGTTAATGAGCAGCATGTAATGTTGGCTTCAGCTTGTTTTTG
ACTTTGACTGCTAGCACCAAATCTCGAATGGCCATGATTTCCGTCATCAG
GAAGATGTTTGAATTGGTCTTCTCTGCTTTGCTTGATAGTTTGATCAAGA
TCCCAAGTAGCAACACGAGTGGCTGGATCTGTGCGTGTTGAATAGATCCA
CAACTGTAAAGGTTTGAACAGGATGTATATTACACGTCCTTGTCGATCAA
ATGCCACAGATATTACATCATCACCAATGGGAATTTCCGGTGGTGGAAGA
ATTGTTGTGCGTCGTTGACCAGTGTGTTTGCTGAATAATCGGATACTGTT
ATCAGCAGTGGAGACAACAACATACTGTCTTAATCCAGCTATTGGTGATG
TGACATTCATGTGTTTGACTGGTGCACGGCTTGTGCTCCAGAATCTGAAG
GAATAGTTCAAATCAAACGTTTGGATACCTTTATGTGATGCTGCAAATAA
AGAGTTTGTACTGTATACTTTCATGAAAAGGATTCCCTCTGTAAAGACAG
GAATGCTGTAAATTTCACCCAACATCTGCaaagaaaacacttttataGTG
CCATCAAGTGACGCAGAAATAAACATAGTTCCGTCTTTTGGGTGAATAAG
CAATGATGTTATGATCTTTGAATGGCTTAACATTGCTGTCACAAGCCCTC
CATTTGGACTATAAATACTGAGTTCTCCATTGATTGAACCTGCAACCATC
AGATTGGCTTCATCAGAATACGCACATGCACAAAAGTATGCAATAGAATT
AGGTCCTCTCAAGCAAAACAATTCTTTACCATCCAGGGAGTAACAAAAAA
TGTCAGTGTCACACATTAAGTAAATACGCTGtaaatcttcatcaaatttg
GCACTTGAAAGGACCAATGACTCTTCTACTTTAAATTCTCTTTGGAATGC
AATTGAAGGTTTCATTTCTTTCATGACATactttaaaaatttgattttat
ttctGCATATTGCTATCAGTTCATTCTCTTTATCGTTGTAAAGAAGTCTA
GAAATCGAATCTCCATCTCCATCTTGATGACAAATTTCAAGGAAATTCAA
ATTGTAAACGTTGATTCCAAAATGTTTTGTCAAAGCAAAGTATAAGTTAT
GGAATCTTGAATAACATAAACATCTCAAAACATTGAACTTGTAAGCCTCA
AATTCCATGGCACGTTTGATGGTACTTGTGATACAAGTTGGGTGCCAGCT
GGAGATGCCTCTAGAGTCAAGAATGATATAGTCATAAGTTTTACTGTTGT
AAATGACATCTTGGAAGTCGCAGTGTTTCGATGAATGAACGTATTCAGCA
GTAACCTGTGGACCATAAGGTATGGAAATGTAACCTTGATATTGTTCTTC
TCCTGAATCCTCAGAATCTTCATTATTCATTGTGTCTAGAATAA Run BLAST on NCBI transcript from alignment at scaffold_167:8781..13496- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050011 ID=TCONS_00050011|Name=TCONS_00050011|organism=Clytia hemisphaerica|type=transcript|length=4716bp|location=Sequence derived from alignment at scaffold_167:8781..13496- (Clytia hemisphaerica)
NGGTGGATGATTCGTAGTCACCTGCTGAAGCATAATCACTTTCAGGGTCT
CTAGTATTTTCAGCAAGCTCAGTTCTGAATTGTGATCGTTTATTTCTGAT
TGGCGATGCTGGCTTTCGAAAGGAGCTGAGGATGTATTTCATTACACGTT
GAGTTTCTTCATCCTTAATTATCAATGGAGATTCTTCTTTGTTGTTTGGG
TCGGTACCTCGAACTGGTGAAATCATCAAAGGATCAAGAATCTCAGGATC
TTGGGAAGAACGAGATGACCGTCCACTGTTTCTGCTATTCTTCATATCTC
GTTGTCTCTCAACAATATGTCGAGATTCGTTAGTTTCTTCGTCATTGATA
TGGAGATCTGTTTGACTTGGTCGAATTTCAACCTTGATGACTTCGTTCTC
GGTATTTGTAGAATATTTCTTCTCCCTTGTCAATTTGATTGGGCTTTCAG
GTTTGGTAATCTTGGATTTATCTTGCAGCCGTTGAGCTTTTGTTAGGAGA
TCTCGATTCTGTTGCTGGGATTTCGATTGCAGAAACTTTGCTTGAGGGTT
TTGATTCTGTTGTTGGGCCTTAGAAGGTTGAAATTTGGCTTCGAGATCTT
GATTATATTGCTGGGTTTCAGATTGCTGATAATTGGCTCGGAGGTGTTGA
ATCTTTTGTTGAGTTGTAGATTGCTGATAATTTGCTCGGAGGTTTTGATT
CTGTTCCTGGGTTTCAGATTGCTGAGAATTGGCTCGGAGGTGTTGACTCT
GTTGTTGGGTTTCAGATTGCTGAGAATTGACTCGGAGGTGTTGAATCTTT
TGTTGAGTTGTAGATTGCTGAGAATTGGCTCGGAGGTGTTGAATCTTTTG
TTGAGTTGTAGATTGCTGAGAATTGGCTCGGCTGTTTTGATTCTGTTGCT
GAGTTTCGGATTGCTGGGATTTGGTTCGAAGGTGTTGAATCTTTTGTTGG
GTTGTAGATTGCTGAGAATTGGCTCGAAGGTTTTGATTCTGCTTTTGGGC
TTTAGATTGTCGGAGATTAAGGATAACTGATGTAAAGTAGGTTTCACTGT
CTGCATTGATGTTCAAAGAATGTGTCTTTCGGGAAGAGGAAATTGTTCTT
TGAGATGATCGACTTGCAGTACTAGCTCCATCATTGAATCGCAAAGCTTT
CAACTCGGCGTCACTTGTATCACTAATTAATGATTCGTCACCTGATGATA
ATTCAGCTACACACTGATTGAATTTAACAGAAGAAGGTCTCGTTCCTTCG
ATATCAGACCTGTCNAACGGATTGAATTTAACAGAAGAAGGCCTCGTTCC
TTCGATATCAGACCTGTCACTTTCTGGGTTGACAAGAGAATCCAATACAT
TTCTGTATGAAACCAAAGCAGTATCGTCCGTCTGTTTTCCCAGAGCCATT
GAAAGGAGAGAGCGTTGATTGCTAGTAGTTCTCGATTTTGATTCATCCGA
AGCTGAGGAACTGGTTTGGGTTACACTGGAAGAATCTTTGATTTTGAGAT
CTATACATTTGCCTTCCAATAATTCGTTAGAGGTTTGTTTCTTCTCAGAT
TGACGGATGTTTGATTCTTTCAAGAAGGTAGATGATGTACTTGGTGCAAC
TTCAGAGGAAGTTTTGGAATTGGACTTTCCTGTGACGGATGCTGATTTGG
TAGGTTTCGACTTTGTCTTGTTGGTTTTTGACTTCCGTTTGGTTTTCTTC
TTGGCGCGAGGAGTAATTTTATAAATATCCTTTCTTTCGATGCTGGCAAA
AGGATATGGTTTCATTATATTCAGCGTNTAAATATCCTTTCTTTCGATGC
TGGCAAAAGGATATGGTTTCATTATATTCAGCGTTTGTTCTTTTTCATTC
GAAATCGGCTTTGACGGCAACGAGGTTTGTTTATTGCGGATCTTATCGTA
ATAGCTTAGAGGGGCAGGGCTGGTAGGTTTGGCAAGACCACCATGGGTTT
GAATACTTCCTGCTACATCAATGTTTGATTTGGCATCAATAACCTCAGCC
ACGTCGTTCTTTAGGGGTTCCACTGGTGGCTGTTTGGAATGCAGTGGCTC
AGGAGTGCTGAGACAAGATGGAAATTGTATATCTACAACATCTATTTCTT
GACTCTCATCACTATCTTGGTAAAGGGTGGTACTGGCAAATGAGTCTAAG
CTGTCGGAGGACAATTCTGATGCAACAATAAGGTCTACATCAATTTCTTC
ATTGGGAATTGGATCAACAAGAGCTTTATTGAACATCCAAAGAGTTTCGA
GGCCAAGGTGTGGATAAGGAACAAGATAACTCGCCAAATTGATTGGTGGA
TTGTTCGATTGCAACATGTTTCTCTTGCAAACAAATGGATNAGGCCAAGG
TGTGGATAAGGAACAAGATAACTCGCCAAATTGATTGGTGGATTGTTCGA
TTGCAACATGTTTCTCTTGCAAACAAATGGATCCTCAAAGATAAAAGATT
CATCGCCACTGCTATCGTCACAAGTGGTGTTGAATGTAGGTAGTTGCTGT
CTTTGGAAAACAATATGGTAAGGAATCACAAACAACTGTGATTTGAAACT
GATCAATATCTCATCCAGATGGCTCAGAAACAATGCATACTTCAAGGTGT
TGTCAAACTTGATTTCCACGAGTAAGACTTTGCTAAGATTCCATACCCTG
ACATAATTATCTGAACCAACAGAGCAGAATATTTGACGGGTATCAGACAA
ATCAAGACTCACAATATGTCCATCGTGTTCCTTCATTGGGTTAGACTTTA
GCATTTTGTGAGTTTCTTTGTCGACATCATTTTGGAATATGGTTTCAGTG
TGAATGTGACCAGTAGAATAACCAACGACAATCTGAAGATTTTTGAATAC
AAACTGTGTAAAGTCTTCAAAGAAGAACATCTGGTGACAACATTCAAGGG
TAACAACATTCCAAATACGAACCATTATCCCATTGATGGTGTCGATAACA
GCCAATAAGTAAGTTACTGTAGACAAATAATCAACCCTTAAGTTGACAAC
TGGACTTGTTGGATGAGCTTTGAGTGACTTGACTATCAAGCCGCGTTGAC
AAGGATCAAGAAAGCAAATCAAACCATTGCTCAGTCCACACAGTAGGAAA
CCAAAGTTAAATAAATCCTGGTCGGATAATGAGTCAGTATTGAAAACTTC
CCTCTTTATTGTTGTTAATGAGCAGCATGTAATGTTGGCTTCAGCTTGTT
TTTGACTTTGACTGCTAGCACCAAATCTCGAATGGCCATGATTTCCGTCA
TCAGGAAGATGTTTGAATTGGTCTTCTCTGCTTTGCTTGATAGTTTGATC
AAGATCCCAAGTAGCAACACGAGTGGCTGGATCTGTGCGTGTTGAATAGA
TCCACAACTGTAAAGGTTTGAACAGGATGTATATTACACGTCCTTGTCGA
TCAAATGCCACAGATATTACATCATCACCAATGGGAATTTCCGGTGGTGG
AAGAATTGTTGTGCGTCGTTGACCAGTGTGTTTGCTGAATAATCGGATAC
TGTTATCAGCAGTGGAGACAACAACATACTGTCTTAATCCAGCTATTGGT
GATGTGACATTCATGTGTTTGACTGGTGCACGGCTTGTGCTCCAGAATCT
GAAGGAATAGTTCAAATCAAACGTTTGGATACCTTTATGTGATGCTGCAA
ATAAAGAGTTTGTACTGTATACTTTCATGAAAAGGATTCCCTCTGTAAAG
ACAGGAATGCTGTAAATTTCACCCAACATCTNAATCAAACGTTTGGATAC
CTTTATGTGATGCTGCAAATAAAGAGTTTGTACTGTATACTTTCATGAAA
AGGATTCCCTCTGTAAAGACAGGGATGCTGTAAATTTCACCCAACATCTG
CAAAGAAAACACTTTTATAGTGCCATCAAGTGACGCAGAAATAAACATAG
TTCCGTCTTTTGGGTGAATAAGCAATGATGTTATGATCTTTGAATGGCTT
AACATTGCTGTCACAAGCCCTCCATTTGGACTATAAATACTGAGTTCTCC
ATTGATTGAACCTGCAACCATCAGATTGGCTTCATCAGAATACGCACATG
CACAAAAGTATGCAATAGAATTAGGTCCTCTCAAGCAAAACAATTCTTTA
CCATCCAGGGAGTAACAAAAAATGTCAGTGTCACACATTAAGTAAATACG
CTGTAAATCTTCATCAAATTTGGCACTTGAAAGGACCAATGACTCTTCTA
CTTTAAATTCTCTTTGGAATGCAATTGAAGGTTTCATTTCTTTCATGACA
TACTTTAAAAATTTGATTTTATTTCTGCATATTGCTATCAGTTCATTCTC
TTTATCGTTGTAAAGAAGTCTAGAAATCGAATCTCCATCTCCATCTTGAT
GACAAATTTCAAGGAAATTCAAATTGTAAACGTTGATTCCAAAATGTTTT
GTCAAAGCAAAGTATAAGTTATGGAATCTTGAATAACATAAACATCTCAA
AACATTGAACTTGTAAGCCTCAAATTCCATGGCACGTTTGATGGTACTTG
TGATACAAGTTGGGTGCCAGCTGGAGATGCCTCTAGAGTCAAGAATGATA
TAGTCATAAGTTTTACTGTTGTAAATGACATCTTGGAAGTCGCAGTGTTT
CGATGAATGAACGTATTCAGCAGTAACCTGTGGACCATAAGGTATGGAAA
TGTAACCTTGATATTGTTCTTCTCCTGAATCCTCAGAATCTTCATTATTC
ATTGTGTCTAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050011-exon-scaffold_167-1575043694:12261..13496 | TCONS_00050011-exon-scaffold_167-1575043694:12261..13496 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1575043694:9770..12206 | TCONS_00050011-exon-scaffold_167-1575043694:9770..12206 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1575043694:8781..9651 | TCONS_00050011-exon-scaffold_167-1575043694:8781..9651 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1510915933:12261..13496 | TCONS_00050011-exon-scaffold_167-1510915933:12261..13496 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1510915933:9770..12206 | TCONS_00050011-exon-scaffold_167-1510915933:9770..12206 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1510915933:8781..9651 | TCONS_00050011-exon-scaffold_167-1510915933:8781..9651 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1491911889:12261..13496 | TCONS_00050011-exon-scaffold_167-1491911889:12261..13496 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1491911889:9770..12206 | TCONS_00050011-exon-scaffold_167-1491911889:9770..12206 | Clytia hemisphaerica | exon |
| TCONS_00050011-exon-scaffold_167-1491911889:8781..9651 | TCONS_00050011-exon-scaffold_167-1491911889:8781..9651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:8781..13496 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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