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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050001 ID=TCONS_00050001|Name=TCONS_00050001|organism=Clytia hemisphaerica|type=transcript|length=1536bp
GTAGAAGATGTTCAAGGTGATGGACGGTGGTCCAGTATGcaTCAAAGGCA
AGTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTGGAGACT
CACTTATTCAACGTCTAGAAGATACTGAGACGTGGGAAGATACAATTAAA
CCATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGAACATGT
TTTATGGCGACTACAAAATGGCCTTCTTCAACATTGTCGTTGTTATTTTG
TGTGGTACAAATAATCACCAGCATTCATCTGATGAAATTGTGGATGCTCT
TGAAGCAATCTGTTGGAGTGTGGCAGATGTACTGAAAGACACTAAGATCG
TTCTTATCGCTTTGCTACCACGTGGAGAAAAAGACAATCCATTGCGTAAT
AAAATCTATCAAATCAATTACGGTATCGAACAGATTATATCAACCATTCC
GAACACTCATTTAATCAATGCTGACCCTGGGTTTGTTCGTTCAGATGGTG
TCATCTTTCCTGAAGACATGGCTGACTATTTACATTTAACACGCCGCGGG
TATAAGAAGTTTTGTGTCCCCATCATGTCGTGTGTGAAGAAGTTTCTGCA
AGAAGATGCGAAAAAGGAAAAAGCTTTTAATAATAGTATTTATACTTTCC
ATGAGTGAAGATTTGTTGAACAGCTACttcgataaattttttttaagcat
GTATAAAATCGTAATTAGGNAATAATAGTATTTATACTTTCCATGAGTGA
AGATTTGTTGAACAGCTACttcgataaattttttttaagcatGTATAAAA
TCGTAATTAGGTTTTTAACAGTGGCTCTATCTCTAAAGATCTAATCTTTA
AGCATTACAGAGTCTGGCAAGGGAAAGACACTTTAAAAAAACTGTATTTG
GACTATGCAgcactgcaatgtcttccacggacccaatagctgattggttg
aaagtgacgtaaaatcaatcaatactTCACTtgtaaccaatcagctgttg
ggtccgtggaagacattgcaatggtgcatatcatgaagaCGGACCAAGCT
GCAAATGAGGTATTTTCGAGATTACTTCGACGAAATTTAGTAAACACTTT
AATTGATACTTTGATGTCCTCGATTTCAGCGTTTGCATTTTGTTGACCTC
TAACAATCAAATCGATTTGGTATTTGATTTTGCAATTTGTTCTGTTTGTT
GGGAGCAGATGTATTTAATTCTGGTAGTCAAATTGTTTTGGCATTTTTAT
ATTAATCAAAACGaattttcttgaatttattagataaattttcattttac
taaataactaaaaatgacaatataattttttgtaACTCTTCGttaatcat
tttttatttttacatgcaGTACATTAGAATATTTCTTTAAAGTCTATTTA
TATCATCGATAATTCATCCATGAATTTTTAgtatatctttttaattttac
gtTATAAATTTCCTTCTAGAAGATGAACATTCAATAAATAGTTTGATAAC
ATATATTTCCATTGCTCCAAttatttaatgttttct Run BLAST on NCBI transcript from alignment at scaffold_167:1832315..1838945+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050001 ID=TCONS_00050001|Name=TCONS_00050001|organism=Clytia hemisphaerica|type=transcript|length=6631bp|location=Sequence derived from alignment at scaffold_167:1832315..1838945+ (Clytia hemisphaerica)
GTAGAAGATGTTCAAGGTGATGGACGGTGGTCCAGTATGGTGAGTtgctt
tatttttttaagaaaccaatattttattttagtttgaacGTTTCTCTTTT
TGATGAACCCAATGTTTTAAGTCATGGTCCTCTTCAAACACTCACTTTAT
TTCCTAAGGGGCTGCGAAGCCCAAGAATTGTAgtgatgattttttttacc
aaaaattcaattttgatcTATTTGAGAGCCGTTGATTCGATAGCGTTTTT
ATAAAGCACTTTATATTGTTTTGCATTCTATTCATTGGGTCGGGATTGat
tcattttcaataaaactcaAATAGAAGAAAACTTGAGATTGacgaaaaat
aacaaagaaGTTTTTAtatatagtagggggccaagcctggggttccgtga
catcttttctatgacctagccatttttggtctattccaaagaacagtata
ttacaaaatatttttgagagggagacgcggattaggcccgggaaaatttt
ttatgaccaaaatagtgacgccatatgcaaaactgcaagggaaaataagg
ggtagagaaatagcttattttttaaagtcaaaataaacgaaaattatttg
taccatctgatagagcatgaaactccgagcaaaaaattatattacaacaa
ctctctgactaaaacacacaatggcgtatggcgtcactatttttgtCATG
AAAAGTTTCCCGGGCCTTTATttgcgtcctccctctcaaaaatatcttgt
aatatactgttcttttgaatagactaaaaatggctaggtcatagaaaaga
tgtcacggaacccaaggcttggccccctactaataaacatttaaaaaaaa
tggttgTTTGAGGCATATTAACATGTTTcatctttaaatttttagcaTCA
AAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTG
GAGACTCACTTATTCAACGTCTAGAAGATACTGAGGTTTCCTTTGTCTGC
CCAATACTGTATTGTTATtaccatagtgtcctccagggtttgttcccccc
actaaattcttgatttttttaaatctccctcctctttttttttgccccta
cagtatatggcccccaaaacggcgatcaaatttgaaatttctctcaaatc
tagaggaaaagagattttacaaaaatttttgctgtataaaaacctttaac
atctctactttatttcctggaagttctttttcaaaattttcaatttcaac
aatatttttcaatcgctttaagataggtagcttttttctaatggccccca
aaacggaggtttgaaattttagcgatttctcgagttatctttaagatatg
aatacagaattttgaccatagttttgaaatatgatttagagggttttggg
cataaatttatttgataaaatttttacagtatacccctggttgtcaaaat
gcaggtttggggcccccaaaacggaggggtagttaaaatcaaattattaa
ggccagtggtaatagggggaaaaacgatgaacatatttgtgttttccctt
aaattgaCGActcgatggatgtaaaatttatgattttaatgaaatatttg
aagattttcgatattgcaaagtccaaactgaaaatttagaaattttcaaa
atgacaattttgatttaacaacgtctcaatcaagtttttgaaaacaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgaaaatagttccattcatgtatggaataagctgt
gaaaattttagaaaaaaagctcaactgaaactgaaaatattaagctttaa
agatatttttctcctatattttgcaaaaaattgacagaatttgctgtttt
tgctgattcagcgaaaaattttatatataatgttaattttttgttataaa
ctattaactcaaggtaataggaatagaattccaagatcttttctttttct
catatttagaattttcggttttgtcaaccacgcatgctggaaaaactgga
aaacctggaaaaactggaaaaatggcctttttctgaaaactagctggaaa
aactggaaatagGTACATTTTCCAAACAGGaaagctggaaaaactggaaa
agcttttttgaaatttcaatttcaactttATGTCAGGAATTGGTTAGAAT
TATTATGTGATTATACatatatataattttcataAGATGTTATCTAGTAT
GagtttagccattttcagtttaGTTCATCAGACATTCTTTTGTCAAAGCA
TAGATCTCTATgaccgatttgaaagaaatgtcttttgaaaatctagaagt
accagtggataccccttaaaacctacaaagctGCACTATGGGCTCTCTTA
GCCAccaaattcaattcaatattgTTTAGTTCACTattttacaacctctt
ataaatgtactttcataaaatacctaatttcgAGAATTTCAATTATCgca
aagtgttataaaattcaaagttatctaaattttatcaagaatcacatcaa
aaaataagtggccccccactttttggtagaccatgtcatacgtttttaag
agttactattttaagctggtttgagaccaaatcaaaccacatAAACTATT
ATTCTTCCCAattagatatcgttttaaggtgttttgagggtgtaaaatgt
gaaaaatcttcttcgtcgcccaaccatggtgggcgacattctttttccaa
aatgttggctccctcactcaaaatggctcgccggggcccatacgatggct
agccacgatggctaaaaAGATCTATAGAATATCTACAAGATCTATAAGAA
TatgaaaatataattcttcTAAGCCATTTACTTAATCGTGGTTAAAGATT
GCAATGcattgttatcttttttctcatttctttcataaaatgaaaTACCA
CAGACAGCGTACTTTCAACACATAAAGTTTCAGCCTAAAATTCCACCTAC
GTTTTCTGATAGAGGGtacctttatttttttgtaggtTTTGAGGGGTATC
CGCTGGTAATGATTTTGCACTCGCTTATAGCTGGAAAAAAGTACAGATTT
TTGGGTTAAGGCTGGAAAAAGGTACATTTTCCAGCTGAAAATACCTGGAA
AAAAGGATGTTTTTGACCCAAAAAGCTGGatttttcatctaaaataaGTG
TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaatccgtctcaaaccagcaaaaacatgctcattcttaagtataac
catcattctttcaaaataaacaaaaatcgtttaattctgataaatctgcA
AGTCAGAAtctttattttaataaaaaccTCCGtcttgggggccgtctccg
ttttgggggccatatactgtatgacttttcagttttttagtttcccccct
cttttgctttacccccagaaaattctgaaaatatcagttccccccatata
cccatataaacttctcaaatttcaacctgacacaaacggAACGAAAATGG
GTTCCTACTGTAGATGCTAAATGCAACATATTCAATAAACAGAAAAACTA
TAGGAACAATAGGAATTTTCAAATCAGTTCTTAGCAGAATATTTTTATCA
GAAAATAACAATTTCTTTGTTTATTCAGACGTGGGAAGATACAATTAAAC
CATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGAACATGTT
TTATGGCGACTACAAAATGGCCTTCTTCAACATTGTAAACCTAAAGTATT
TTTATTATGGTTTTTCAACAATATTCACGACTCTCTGATTGACTTTATTA
CACTTATGTAtgttttattgacaaaatttcTTACTCCTAAAAACTAttac
ttttattcttttatcctttttATAATCATTTGTCACAAAAAGTTATTGCA
GCGAATTTTATAGCCTCTAGAAGGAAGCTCGTTGGGGTCGGAAACTTTTT
TCCACCTCAGCGCACCGTGTTCTAGAGGCTATGACTTTTGACACAATagt
tttaagtaaaaaaaaatatataaatttaatCTTGTCAcgttatattttgt
tttctccAGGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTC
ATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAG
ATGTACTGAAAGACACTAAGATCGTTCTTATCGTAAGAATCATAACGTTC
TCCTTTAAAATACTGAAATTATTATCTTAACTGTATATTCGAACTTGGTA
ATTTGAAtctctttgtaattcgaacaaacaAGATTCCCTGTTCGAATTCG
AATCCACGAAAGTCGACTTTAAAAGACTAACCCTTTGACGGAAATCCCTC
ACAATCCCATGTTGCTCTATTTTTAAGTCTGCCAGTGGCTTTGACGGATA
TGGCTCAGATAATTGCACTGAGTCGTAAAAATTTATGATTTGTTGGTCCA
GGATACAATAGATATGATGAAACTTTCACCGCGCTGAATCTAaaaataga
ttttatttttgacataatcattactctcgatgtgtttgtacgagttccaa
tcccatcaacctttgcgttaatctcttttgtACGTTAATTACATAATTTG
ACAAAGGATATTtaacaacttgcacgtatctttgattgagccgcattgaa
ttgtgggattgcaactcgtacaaatgtctaaaaaagtgaaaagtaataat
tatgacgtatatgttgcggagcgctattataatacaccttttcgaccgta
gccgccaattaccgcgcgggcatttttttgtccgcttcaTCCCAccaaaa
ccgtcccagtccttttttcgcacctatagacaatagaaaaatgtgtcaaa
aaagggttggatcgagtttaaggggataattaaataattaagtggcacgc
gcctgaccgcgcgactacggtcgaaaacgATAATTGATATATCTTTTCTG
AAGGCTTTGCTACCACGTGGAGAAAAAGACAATCCATTGCGTAATAAAAT
CTATCAAATCAATTACGGTATCGAACAGATTATATCAACCATTCCGAACA
CTCATTTAATCAATGCTGACCCTGGGTTTGTTCGTTCAGATGGTGTCATC
TTTCCTGAAGACATGGCTGACTATTTACATTTAACACGCCGCGGGTATAA
GAAGTTTTGTGTCCCCATCATGTCGTGTGTGAAGAAGTTTCTGCAAGAAG
ATGCGAAAAAGGAAAAAGCTTTTAATAATAGTATTTATACTTTCCATGAG
TGAAGATTTGTTGAACAGCTACttcgataaattttttttaagcatGTATA
AAATCGTAATTAGGNAATAATAGTATTTATACTTTCCATGAGTGAAGATT
TGTTGAACAGCTACttcgataaattttttttaagcatGTATAAAATCGTA
ATTAGGTTTTTAACAGTGGCTCTATCTCTAAAGATCTAATCTTTAAGCAT
TACAGAGTCTGGCAAGGGAAAGACACTTTAAAAAAACTGTATTTGGACTA
TGCAgcactgcaatgtcttccacggacccaatagctgattggttgaaagt
gacgtaaaatcaatcaatactTCACTtgtaaccaatcagctgttgggtcc
gtggaagacattgcaatggtgcatatcatgaagaCGGACCAAGCTGCAAA
TGAGGTATTTTCGAGATTACTTCGACGAAATTTAGTAAACACTTTAATTG
ATACTTTGATGTCCTCGATTTCAGCGTTTGCATTTTGTTGACCTCTAACA
ATCAAATCGATTTGGTATTTGATTTTGCAATTTGTTCTGTTTGTTGGGAG
CAGATGTATTTAATTCTGGTAGTCAAATTGTTTTGGCATTTTTATATTAA
TCAAAACGaattttcttgaatttattagataaattttcattttactaaat
aactaaaaatgacaatataattttttgtaACTCTTCGttaatcatttttt
atttttacatgcaGTACATTAGAATATTTCTTTAAAGTCTATTTATATCA
TCGATAATTCATCCATGAATTTTTAgtatatctttttaattttacgtTAT
AAATTTCCTTCTAGAAGATGAACATTCAATAAATAGTTTGATAACATATA
TTTCCATTGCTCCAAttatttaatgttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00050001-exon-scaffold_167-1491911889:1832315..1832353 | TCONS_00050001-exon-scaffold_167-1491911889:1832315..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1510915933:1832315..1832353 | TCONS_00050001-exon-scaffold_167-1510915933:1832315..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1575043694:1832315..1832353 | TCONS_00050001-exon-scaffold_167-1575043694:1832315..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1491911889:1833210..1833299 | TCONS_00050001-exon-scaffold_167-1491911889:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1510915933:1833210..1833299 | TCONS_00050001-exon-scaffold_167-1510915933:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1575043694:1833210..1833299 | TCONS_00050001-exon-scaffold_167-1575043694:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1491911889:1836443..1836548 | TCONS_00050001-exon-scaffold_167-1491911889:1836443..1836548 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1510915933:1836443..1836548 | TCONS_00050001-exon-scaffold_167-1510915933:1836443..1836548 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1575043694:1836443..1836548 | TCONS_00050001-exon-scaffold_167-1575043694:1836443..1836548 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1491911889:1836874..1836996 | TCONS_00050001-exon-scaffold_167-1491911889:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1510915933:1836874..1836996 | TCONS_00050001-exon-scaffold_167-1510915933:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1575043694:1836874..1836996 | TCONS_00050001-exon-scaffold_167-1575043694:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1491911889:1837768..1838945 | TCONS_00050001-exon-scaffold_167-1491911889:1837768..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1510915933:1837768..1838945 | TCONS_00050001-exon-scaffold_167-1510915933:1837768..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050001-exon-scaffold_167-1575043694:1837768..1838945 | TCONS_00050001-exon-scaffold_167-1575043694:1837768..1838945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1832315..1838945 + |
Blast
BLAST of TCONS_00050001 vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.116e-47 Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2
Query: 236 VVVILCGTNNHQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFC 565
+VV+ GTNNH H+++++ ++AI V + ++V++ LLPRG+ NPLR K Q+N + ++ P H ++ADPGFV SDG I DM DYLHL+R GY C
Sbjct: 96 IVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVC 205 HSP 2 Score: 101.293 bits (251), Expect = 4.116e-47 Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 1 VEDVQGDGRWSSMHQRQVESCRLQKPNVLFVGDSLIQRLEDTETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCRCYFV 252
V+DVQGDGRW S+H R V + ++P V+F+GDSL+Q + E W + PL+A+N GIGGD T+HVLWRL+NG L+H R V
Sbjct: 14 VQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIV 97
The following BLAST results are available for this feature:
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