TCONS_00049996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049996
Unique NameTCONS_00049996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049996 ID=TCONS_00049996|Name=TCONS_00049996|organism=Clytia hemisphaerica|type=transcript|length=905bp
CGGGTTCGACTTCCTTGGGATTATACCAAGAGATTTCGCCATTGCCGGTA
CCCTTGGTGAATTTGTAATTACCAGTCAAAAGCGTGGTGTAGCAATGATT
GAACCACCAGCCAACTCTTCCGTGTCCAGTCGAACAATGGCCAGAAGAAT
AGTCATTATCCTGATCATACGTTGAAAACTTCATGTTGTTGTGGTGGTAA
AGAAAAGAATCGGATTCGGTTATATGAGATGCGTTTCCTGACACACCGCT
GATCTTCAATGTGTATTTGCTCGCCTCATCTCCAACTTCGAAGGTATCAT
ATTTTGCATAAACTGGTTTTGTTTGTCCTTTCATTCGCATATTGATGAGC
AGTGTGGAGCTTTTGGGCGCAAAGGTGGGTTTGGTGAGATCGTGCATGTT
TTCATTTCCAAACCAAAATTCGgttaaaagttttccaaatccgAACTTGT
AATCTTTCCAGGGTCTTTGAAAATTGACAGAACCATCTTGGCGACGCAAA
ATTGTTGTGAAACCACCTCCTTGGCTCGTTTGATCGCAAAAGACATTAAT
CACGCTGAATCGAGGGCCATGGATTTTGTACAAACCATTCTTTTGAAAGC
CAGCTTGTAGAAATTCCAAGCAATCTTGCATCGGGTCGACGTCTGTACAA
TCACAACATTCACTATCATTGATAGGTTTGCAAGGAGCGCAGTGCCCATG
AAGCTTTCTTAGGTATCCAACTTCAGAGTTCAAAAGTTGAACTTCTTTTT
GGAGGTTTTGTGTAGATTGTTTCAACACATGAACGTTTTGTTGAAGGTTT
GTGATGGTTTTATCCAATAATCGTCCAGCAGTTTGATTGGTTGAGGTTGA
AGAAGCTTGAAAGATACAAGCAAATAATTGAACGCAGATGATCGCCAACA
TTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_167:1792223..1793127+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049996 ID=TCONS_00049996|Name=TCONS_00049996|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at scaffold_167:1792223..1793127+ (Clytia hemisphaerica)
CGGGTTCGACTTCCTTGGGATTATACCAAGAGATTTCGCCATTGCCGGTA
CCCTTGGTGAATTTGTAATTACCAGTCAAAAGCGTGGTGTAGCAATGATT
GAACCACCAGCCAACTCTTCCGTGTCCAGTCGAACAATGGCCAGAAGAAT
AGTCATTATCCTGATCATACGTTGAAAACTTCATGTTGTTGTGGTGGTAA
AGAAAAGAATCGGATTCGGTTATATGAGATGCGTTTCCTGACACACCGCT
GATCTTCAATGTGTATTTGCTCGCCTCATCTCCAACTTCGAAGGTATCAT
ATTTTGCATAAACTGGTTTTGTTTGTCCTTTCATTCGCATATTGATGAGC
AGTGTGGAGCTTTTGGGCGCAAAGGTGGGTTTGGTGAGATCGTGCATGTT
TTCATTTCCAAACCAAAATTCGgttaaaagttttccaaatccgAACTTGT
AATCTTTCCAGGGTCTTTGAAAATTGACAGAACCATCTTGGCGACGCAAA
ATTGTTGTGAAACCACCTCCTTGGCTCGTTTGATCGCAAAAGACATTAAT
CACGCTGAATCGAGGGCCATGGATTTTGTACAAACCATTCTTTTGAAAGC
CAGCTTGTAGAAATTCCAAGCAATCTTGCATCGGGTCGACGTCTGTACAA
TCACAACATTCACTATCATTGATAGGTTTGCAAGGAGCGCAGTGCCCATG
AAGCTTTCTTAGGTATCCAACTTCAGAGTTCAAAAGTTGAACTTCTTTTT
GGAGGTTTTGTGTAGATTGTTTCAACACATGAACGTTTTGTTGAAGGTTT
GTGATGGTTTTATCCAATAATCGTCCAGCAGTTTGATTGGTTGAGGTTGA
AGAAGCTTGAAAGATACAAGCAAATAATTGAACGCAGATGATCGCCAACA
TTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031676XLOC_031676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049996-exon-scaffold_167-1491911889:1792223..1793127TCONS_00049996-exon-scaffold_167-1491911889:1792223..1793127Clytia hemisphaericaexon
TCONS_00049996-exon-scaffold_167-1510915933:1792223..1793127TCONS_00049996-exon-scaffold_167-1510915933:1792223..1793127Clytia hemisphaericaexon
TCONS_00049996-exon-scaffold_167-1575043694:1792223..1793127TCONS_00049996-exon-scaffold_167-1575043694:1792223..1793127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1792223..1793127 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236291	0.43517	1.10539	0.903813	1.23718	0.706161	0.924314	1.3875	1.16859	1.1081	0.906899	1.24018	10.9493	10.964	104.266	135.276	10.7562	10.7327	65.2493	74.0244	9.74404	8.93141	41.6742	36.3618	35.5993	43.714	2.60519	2.26294	132.611	176.08
Blast
[Close]
BLAST of TCONS_00049996 vs. Swiss-Prot (Human)
Match: FGL1 (Fibrinogen-like protein 1 OS=Homo sapiens GN=FGL1 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.133e-35
Identity = 99/305 (32.46%), Postives = 149/305 (48.85%), Query Frame = -2 
Query:   23 VQLFACIFQASSTSTNQTAGRLLD--KTITNLQQNVHVLKQSTQNLQKEVQLL--NSEVGYLRKLHGHCAPCKPINDSECCDCTDVDPMQDCLEFLQAGFQKNGLYKI---HGPRFSVINVFCDQTSQGGGFTTILRRQDGSVNFQRPWKDYKFGFGKLLT---EFWFGNENMHDLTKPTFAPKSSTLLINMRMKGQTKPVYAKYDTFEVGDEASKYTLKISGVSGNASHITESD-----SFLYHHNNMKFSTYDQDNDYSSGHCSTGHGRVGWWFNHCYTTLLTGNY---KFTKGTGNGEISWY 883
             ++F+ I   ++ +  +    L D  +    L+  V +L+   +  Q +++ L   +EV +L K           +++   D        DC E    G++ +G YKI     P  +  +V+CD  S GGG+T I RR DGS NF R WKDY+ GFG  +    E+W GN+N+H LT      +  TL I++    +    YA+Y  F+VGDE + Y L I   SG A      +      +   H  MKFST+D+D+D   G+C+    + GWWFN C++  L G Y    +T  T NG I WY
Sbjct:    2 AKVFSFILVTTALTMGREISALEDCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENEVQFLDKG----------DENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSP--AEFSVYCD-MSDGGGWTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLT----TQEDYTLKIDL-ADFEKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDRDHDNYEGNCAE-EDQSGWWFNRCHSANLNGVYYSGPYTAKTDNG-IVWY 286
The following BLAST results are available for this feature:
BLAST of TCONS_00049996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL12.133e-3532.46Fibrinogen-like protein 1 OS=Homo sapiens GN=FGL1 ... [more]
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