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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049989 ID=TCONS_00049989|Name=TCONS_00049989|organism=Clytia hemisphaerica|type=transcript|length=1865bpRun BLAST on NCBI transcript from alignment at scaffold_167:1685074..1697735+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049989 ID=TCONS_00049989|Name=TCONS_00049989|organism=Clytia hemisphaerica|type=transcript|length=12662bp|location=Sequence derived from alignment at scaffold_167:1685074..1697735+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049989 vs. Swiss-Prot (Human)
Match: U2AFM (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 1.847e-55 Identity = 110/258 (42.64%), Postives = 145/258 (56.20%), Query Frame = 2
Query: 254 PNPPADWQPNGEFFLPEMDPRNCKFYIKTGACRFGQRCSRVHLKYDKSPTVMIQNFFQDARLSMPVLNEQNNDTGLEYDEVDMIHDFEKFYDDVIQEFKSAGEVVMFKCCQNYVAHLRGNVYVQYKTAEEAKEAIKLFNGRYYAGRMLTVEQSPITNWRSSICGLFDKRLCPRGSACNFLHVFRNPKN--------AYSVPNRTDF----DPERAFRSGGYD---PRFVNPKHPVFQYYSQRDAYGYRSSDVSKGKSA 982
P PP D F + E D NC FY KTGACRFG RCSR H SPT++I++ F + ++ + D LEY E + F FY+DV+ EFK+ G+V+ FK N HLRGNVYVQY++ EE + A+ LFNGR+YAGR L E P+T W+ +ICGLF+ + CPRG CNFLHVFRNP N Y P+RT + ER R G +D R ++P + +R+ R S +GK +
Sbjct: 156 PEPPVD------FRVMEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKS 407 The following BLAST results are available for this feature:
BLAST of TCONS_00049989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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