TCONS_00049976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049976
Unique NameTCONS_00049976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049976 ID=TCONS_00049976|Name=TCONS_00049976|organism=Clytia hemisphaerica|type=transcript|length=500bp
tttagaaaataaagaaaaattagcAAAACATAATTTAAGTTAAAATGGCG
TCCATGGATATTAAGTTGAAGAAAGTCAACAAAGTTTATCGTGAGGGGGA
GAAGATTGCTGGTACAGTGATTGTAATTGGGAGAGGAGAGGTTGTTCATT
CAGGAATCTCTCTTTCACTGGAGGGTACAGTCAACATGCAGCTAAGTGCC
AAAAGTGTTGGAATGTTTGAAGCTTTCTACAATTCTGTTAAACCCATTAC
TGTGTTAAATACTATTTTGGAACTTGTAAAACCAGGCAAATTACCAAGTG
GGACGACAGAAATTCCATTTGAAATACCAATCCGTCATCTAAAGAACAAA
ACTCTGTTTGAATCTTATCATGGTGTATTCATCAATATTCAATATCTGAT
AAAATGTGACATGAAGAGATCATTACTCAACAAAGATTTGTCAAAATCAA
CAGAATTCATCATTGAAGATCAAGTAAGTTGATTGAGgactaattcgaag
Run BLAST on NCBI

protein sequence of TCONS_00049976-protein

>TCONS_00049976-protein ID=TCONS_00049976-protein|Name=TCONS_00049976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MASMDIKLKKVNKVYREGEKIAGTVIVIGRGEVVHSGISLSLEGTVNMQL
SAKSVGMFEAFYNSVKPITVLNTILELVKPGKLPSGTTEIPFEIPIRHLK
NKTLFESYHGVFINIQYLIKCDMKRSLLNKDLSKSTEFIIEDQVS
Run BLAST on NCBI

transcript from alignment at scaffold_167:1608046..1610043+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049976 ID=TCONS_00049976|Name=TCONS_00049976|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at scaffold_167:1608046..1610043+ (Clytia hemisphaerica)
tttagaaaataaagaaaaattagcAAAACATAATTTAAGTTAAAATGGCG
TCCATGGATATTAAGTTGAAGAAAGTCAACAAAGTTTATCGTGAGGGGGT
AAGTTCTTCATCTCTCTGTATTCAAACTTCCAATCAGTCCTGTTTTGTTA
AgtttttaaataattaaaaagttaaaaaaaaaacaaggcaTGAATCACCA
ATGAAGAGGCACAATGCTTTCATAATTTCACTTTAAGACCAAGTTGGTCT
AATATGGACATCCCTTATCTAATTCCAGCACCCTTTTTTTGAGATTGGAA
AGTTGGAATCACGGattgaagaaatatttttttgcagcGATTCCAACCTT
CCTATTCTCAGCTCTAAAGAGGGTGCTGAATTAGATGAAGAATGCGACAT
AATAACATAAAATGCACTCCCCTAAAtcattttttctgtatttttcaaaa
aatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggg
ggggggctgagtgttgtgtaatagaactgggggcagagCTGATAAGTTGA
aggatattttaaattatgttaaaaatctatgctgtggggaagtttttatc
cctcttgaaatttttttttatctacagtgaaataaatttatcaaggaaaa
aataatgcaaaattcctttgatattttgctttgtgaaggtgggggctatg
tttctagaatttagctGGGGACTATTTTccttacccccccccctgaaaaa
ttCTGGGTGCTGGACTCACTATGTATAAAACAACTTATTTCTTTCGGTGC
AAAAAAGGGATTTTTGAGAACATGAAGTTTTAGTTTGACCAGGATTGATC
TTTAAATATATTAATTTGATAATAAAGACAGATGAATattcgttttcttt
tttatttctatattaTCCTTTATCAGGAGAAGATTGCTGGTACAGTGATT
GTAATTGGGAGAGGAGAGGTTGTTCATTCAGGAATCTCTCTTTCACTGGA
GGGTACAGTCAACATGCAGCTAAGTGCCAAAAGTGTTGGAATGTTTGAAG
CTTTCTACAATTCTGTTAAACCCATTACTGTGTTAAATACTATTTTGGAA
CTTGTAAAACCAGGCAAATTACCAAGGTAGCCAATTCTTTGGAGCATTCT
TTCTAACAAAATTTCCAATCAAGCTTTTATTTTTACCAACGTTACATTCA
ACTCCCAAGAACGTTTTCTTAacagttttaaattttttggtctATTTCTT
GGCTGCGGAAATAGATGTCTAGACAGTAGAAGAACAGTTAGCAACTTTGT
ATATGTTGTTGGCAATTTTATATATTGGACACCTGATAATTTTATCTTAG
CTGAtgttagaaaaaaaatctttcagttATCTATCAGTTAtctaataaaa
tttcttcttttatcttCTGAATCTACCCTTCAGTGGGACGACAGAAATTC
CATTTGAAATACCAATCCGTCATCTAAAGAACAAAACTCTGTTTGAATCT
TATCATGGTGTATTCATCAATATTCAAGTAGGTATCGACACCGTTGTTTA
GTCTCTTTTATTAGCACAATCAAAgtgcgggaattaattttactgttttt
tcgcggttttttggcaaaacctgaaaatattataGGGCAGTCATCACAAT
TCATTGCCAATGAACTAAGTGATGTCATTCAGTTGAAAATTGTATGTATC
TCTACATATTCTACATTCAGTTTGATCACGTAACCAATCCTAACAATCAT
TTCTTGTCGTAAAATTGTTCAATTTTCACTTATTTTCTAGTATCTGATAA
AATGTGACATGAAGAGATCATTACTCAACAAAGATTTGTCAAAATCAACA
GAATTCATCATTGAAGATCAAGTAAGTTGATTGAGgactaattcgaag

Coding sequence (CDS) from alignment at scaffold_167:1608046..1610043+

>TCONS_00049976 ID=TCONS_00049976|Name=TCONS_00049976|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_167:1608046..1610043+ (Clytia hemisphaerica)
ATGGCGTCCATGGATATTAAGTTGAAGAAAGTCAACAAAGTTTATCGTGA
GGGGGAGAAGATTGCTGGTACAGTGATTGTAATTGGGAGAGGAGAGGTTG
TTCATTCAGGAATCTCTCTTTCACTGGAGGGTACAGTCAACATGCAGCTA
AGTGCCAAAAGTGTTGGAATGTTTGAAGCTTTCTACAATTCTGTTAAACC
CATTACTGTGTTAAATACTATTTTGGAACTTGTAAAACCAGGCAAATTAC
CAAGTGGGACGACAGAAATTCCATTTGAAATACCAATCCGTCATCTAAAG
AACAAAACTCTGTTTGAATCTTATCATGGTGTATTCATCAATATTCAATA
TCTGATAAAATGTGACATGAAGAGATCATTACTCAACAAAGATTTGTCAA
AATCAACAGAATTCATCATTGAAGATCAAGTAAGTTGAATGGCGTCCATG
GATATTAAGTTGAAGAAAGTCAACAAAGTTTATCGTGAGGGGGAGAAGAT
TGCTGGTACAGTGATTGTAATTGGGAGAGGAGAGGTTGTTCATTCAGGAA
TCTCTCTTTCACTGGAGGGTACAGTCAACATGCAGCTAAGTGCCAAAAGT
GTTGGAATGTTTGAAGCTTTCTACAATTCTGTTAAACCCATTACTGTGTT
AAATACTATTTTGGAACTTGTAAAACCAGGCAAATTACCAAGTGGGACGA
CAGAAATTCCATTTGAAATACCAATCCGTCATCTAAAGAACAAAACTCTG
TTTGAATCTTATCATGGTGTATTCATCAATATTCAATATCTGATAAAATG
TGACATGAAGAGATCATTACTCAACAAAGATTTGTCAAAATCAACAGAAT
TCATCATTGAAGATCAAGTAAGTTGAATGGCGTCCATGGATATTAAGTTG
AAGAAAGTCAACAAAGTTTATCGTGAGGGGGAGAAGATTGCTGGTACAGT
GATTGTAATTGGGAGAGGAGAGGTTGTTCATTCAGGAATCTCTCTTTCAC
TGGAGGGTACAGTCAACATGCAGCTAAGTGCCAAAAGTGTTGGAATGTTT
GAAGCTTTCTACAATTCTGTTAAACCCATTACTGTGTTAAATACTATTTT
GGAACTTGTAAAACCAGGCAAATTACCAAGTGGGACGACAGAAATTCCAT
TTGAAATACCAATCCGTCATCTAAAGAACAAAACTCTGTTTGAATCTTAT
CATGGTGTATTCATCAATATTCAATATCTGATAAAATGTGACATGAAGAG
ATCATTACTCAACAAAGATTTGTCAAAATCAACAGAATTCATCATTGAAG
ATCAAGTAAGTTGAATGGCGTCCATGGATATTAAGTTGAAGAAAGTCAAC
AAAGTTTATCGTGAGGGGGAGAAGATTGCTGGTACAGTGATTGTAATTGG
GAGAGGAGAGGTTGTTCATTCAGGAATCTCTCTTTCACTGGAGGGTACAG
TCAACATGCAGCTAAGTGCCAAAAGTGTTGGAATGTTTGAAGCTTTCTAC
AATTCTGTTAAACCCATTACTGTGTTAAATACTATTTTGGAACTTGTAAA
ACCAGGCAAATTACCAAGTGGGACGACAGAAATTCCATTTGAAATACCAA
TCCGTCATCTAAAGAACAAAACTCTGTTTGAATCTTATCATGGTGTATTC
ATCAATATTCAATATCTGATAAAATGTGACATGAAGAGATCATTACTCAA
CAAAGATTTGTCAAAATCAACAGAATTCATCATTGAAGATCAAGTAAGTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031668XLOC_031668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049976-exon-scaffold_167-1491911889:1608046..1608143TCONS_00049976-exon-scaffold_167-1491911889:1608046..1608143Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1510915933:1608046..1608143TCONS_00049976-exon-scaffold_167-1510915933:1608046..1608143Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1575043694:1608046..1608143TCONS_00049976-exon-scaffold_167-1575043694:1608046..1608143Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1491911889:1609072..1609271TCONS_00049976-exon-scaffold_167-1491911889:1609072..1609271Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1510915933:1609072..1609271TCONS_00049976-exon-scaffold_167-1510915933:1609072..1609271Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1575043694:1609072..1609271TCONS_00049976-exon-scaffold_167-1575043694:1609072..1609271Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1491911889:1609579..1609672TCONS_00049976-exon-scaffold_167-1491911889:1609579..1609672Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1510915933:1609579..1609672TCONS_00049976-exon-scaffold_167-1510915933:1609579..1609672Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1575043694:1609579..1609672TCONS_00049976-exon-scaffold_167-1575043694:1609579..1609672Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1491911889:1609936..1610043TCONS_00049976-exon-scaffold_167-1491911889:1609936..1610043Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1510915933:1609936..1610043TCONS_00049976-exon-scaffold_167-1510915933:1609936..1610043Clytia hemisphaericaexon
TCONS_00049976-exon-scaffold_167-1575043694:1609936..1610043TCONS_00049976-exon-scaffold_167-1575043694:1609936..1610043Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049976-proteinTCONS_00049976-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1608046..1610043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.2022	55.4018	17.117	10.1288	42.5826	31.8304	25.2356	25.5329	22.7048	26.9783	22.1097	16.4016	15.4868	17.3463	19.7993	20.8762	20.0434	17.2606	15.2928	16.9521	18.978	16.2138	55.216	47.0221	10.9953	18.1074	22.9026	18.9115	40.1894	34.6048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028934Vps26-related
IPR014756Ig_E-set
Blast
[Close]
BLAST of TCONS_00049976 vs. Swiss-Prot (Human)
Match: DSCR3 (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.222e-62
Identity = 89/139 (64.03%), Postives = 117/139 (84.17%), Query Frame = 3 
Query:   51 SMDIKLKKVNKVYREGEKIAGTVIVIGRGEVVHSGISLSLEGTVNMQLSAKSVGMFEAFYNSVKPITVLNTILELVKPGKLPSGTTEIPFEIPIRHLK-NKTLFESYHGVFINIQYLIKCDMKRSLLNKDLSKSTEFII 464
            ++DIK+K+ NKVY  GE ++G V++  +  V H G+SL++EGTVN+QLSAKSVG+FEAFYNSVKPI ++N+ +E+VKPGK PSG TEIPFE P+ HLK NK L+E+YHGVF+NIQY ++CDMKRSLL KDL+K+ EFI+
Sbjct:    4 ALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPL-HLKGNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIV 141
The following BLAST results are available for this feature:
BLAST of TCONS_00049976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSCR37.222e-6264.03Down syndrome critical region protein 3 OS=Homo sa... [more]
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