|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049964 ID=TCONS_00049964|Name=TCONS_00049964|organism=Clytia hemisphaerica|type=transcript|length=4316bpRun BLAST on NCBI transcript from alignment at scaffold_167:1435266..1444126+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049964 ID=TCONS_00049964|Name=TCONS_00049964|organism=Clytia hemisphaerica|type=transcript|length=8861bp|location=Sequence derived from alignment at scaffold_167:1435266..1444126+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049964 vs. Swiss-Prot (Human)
Match: MXRA5 (Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 3.139e-22 Identity = 77/270 (28.52%), Postives = 122/270 (45.19%), Query Frame = 2
Query: 158 PGDRIVWK---KDGVNVLEKYRDRASVDVNGTLFLDPVKRGDLGLYQCLVTTKRFEDEVTITKTMFLNVKYVPVIIYILPS--VKIYVHKTAVLPCTAQGNPGVNFRWLFPNGERIKNTPD--------KKYSVSSNGSLIIRNIGTTDAKNYTCAPYSDLGSGEKRHTELIVFSPPSFFNKAQGTVDVLEGDTVTLDCASGGIPKPVITWGHNNKKI--KDGERFKTESIGKLNIRDVRGSDAGSYACIVRSEAGEIHRSTTLVVKGKP 922
P RI+W+ K ++ L + R V NGTL + V D G Y C+ K +D V + ++V P I K++ + C A G P W P+G + + K+Y V +NG+L +G + +YTC + +G E R +V +P + NK V V GD VT+ C + G P P +TW K+ E+++ G L I+ + SD+G+Y C+VR+ AGE ++ + V +P
Sbjct: 2174 PWPRILWRLPSKRMIDALFSFDSRIKVFANGTLVVKSVTDKDAGDYLCVARNKVGDDYVVLK----VDVVMKPAKIEHKEENDHKVFYGGDLKVDCVATGLPNPEISWSLPDGSLVNSFMQSDDSGGRTKRYVVFNNGTLYFNEVGMREEGDYTCFAENQVGKDEMRVRVKVVTAPATIRNKTYLAVQVPYGDVVTVACEAKGEPMPKVTWLSPTNKVIPTSSEKYQIYQDGTLLIQKAQRSDSGNYTCLVRNSAGEDRKTVWIHVNVQP 2439 HSP 2 Score: 103.605 bits (257), Expect = 7.354e-22 Identity = 77/273 (28.21%), Postives = 125/273 (45.79%), Query Frame = 2
Query: 158 PGDRIVWKKDGVNVLEKYRDRASVDVNGTLFLDPVKRGDLGLYQCLVTTKRFEDEVTITKTMFLNVKYVPVIIYILPSVKIYVHKTA------VLPCTAQGNPGVNFRWLFPNGERIKNTPDKKY----SVSSNGSLIIRNIGTTDAKNYTCAPYSDLGSGEKRHT-ELIVFSP---PSFFNKAQGTVDVLEGDTVTLDCASGGIPKPVITW----GHNNKKIKDGERFKTESIGKLNIRDVRGSDAGSYACIVRSEAGEIHRSTTLVVKGKP 922
P ++ W V+ ++ + +GTL + +R D G Y CLV ED KT++++V P I P+ V + A ++ C A+G P W FP G + P Y +V NGSL IR++ +D+ C ++ GE R +L V P P F + + + G T++L+C++ G P P + W G + + + +RF ++ G L+I + DAG+Y C+ R+ AG R +L V KP
Sbjct: 2374 PMPKVTWLSPTNKVIPTSSEKYQIYQDGTLLIQKAQRSDSGNYTCLVRNSAGEDR----KTVWIHVNVQPPKINGNPNPITTVREIAAGGSRKLIDCKAEGIPTPRVLWAFPEGVVL---PAPYYGNRITVHGNGSLDIRSLRKSDSVQLVCMARNE--GGEARLILQLTVLEPMEKPIFHDPISEKITAMAGHTISLNCSAAGTPTPSLVWVLPNGTDLQSGQQLQRFYHKADGMLHISGLSSVDAGAYRCVARNAAGHTERLVSLKVGLKP 2637 HSP 3 Score: 92.0485 bits (227), Expect = 2.167e-18 Identity = 71/259 (27.41%), Postives = 117/259 (45.17%), Query Frame = 2
Query: 164 DRIVWKKDGVNVLEKYRDRASVDVNGTLFLDPVKRGDLGLYQCLVTTKRFEDEVTITKTMFLNVKYVPVIIY--------ILPSVKIYVHKTAVLPCTAQGNPGVNFRWLFPNGERIKNTP--DKKYSVSSNGSLIIRNIGTTDAKNYTCAPYSDLGSGEKRHTELIVFSPPSFFNKAQGT----VDVLEGDTVTLDCASGGIPKPVITWGHNNKKIKDG-----ERFKTESIGKLNIRDVRGSDAGSYACIVRSEAGE 883
DR VW+ + R ++ N TL + D G+Y+C+ + D + I L+V +P +I+ + P + I++H CTA+ P + RW+ +G +I+ + V NG+L IRN+ D+ Y C + +GS R T + + + GT DV G T+ LDC++ G P P I W +K++ D R K + G L ++ V DAG Y C+ R++ G+
Sbjct: 1988 DRRVWQ-----TVSPVEGRITLHENRTLSIKEASFSDRGVYKCVASNAAGADSLAIR----LHVAALPPVIHQEKLENISLPPGLSIHIH------CTAKAAPLPSVRWVLGDGTQIRPSQFLHGNLFVFPNGTLYIRNLAPKDSGRYECVAANLVGSA--RRTVQLNVQRAAANARITGTSPRRTDVRYGGTLKLDCSASGDPWPRILWRLPSKRMIDALFSFDSRIKVFANGTLVVKSVTDKDAGDYLCVARNKVGD 2229 The following BLAST results are available for this feature:
BLAST of TCONS_00049964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.