TCONS_00049959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049959
Unique NameTCONS_00049959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049959 ID=TCONS_00049959|Name=TCONS_00049959|organism=Clytia hemisphaerica|type=transcript|length=547bp
ACATAGCTTAGAATCACAATTCGAAGAATTCAAGGGAAGAGGGACCGGAC
GAGAAGTTGTAACGGAACAATATCGCAAAGAACTACTGACAGGAAAAAGG
CAACCGGTAGAGGAGCATTTGAAGTCGAGAAGGCCCAAGACTTCTAAGAA
GTGGCCTTTCAAAGACTCGatcctacccccttggaaaaaagaatgaattt
ttttcctcATTAACATTGACACGTTTATACACAATAATCCGATGTTAACT
GGAATTTCGATAATCCCAATGGACTTGTAATGAGACTGCAGAGAATTGAA
CCCGGGATCTCGAATCAACAACCAACACCCTAACTAACATGTGACCATGA
aattattatagagactctggataaacatcaaatgAAACGGTGGAGTTGAG
TATTGTCGTCCAattcagaaaacaatcaatgTACCGACTTTGTCCGCAAa
tgacaactgtcatggcggctccaaggactctgattttgaaaaatgatcaa
tactcttatttctaaaaagttctctatcttcttctatttatattttt
Run BLAST on NCBI

transcript from alignment at scaffold_167:1309017..1309922+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049959 ID=TCONS_00049959|Name=TCONS_00049959|organism=Clytia hemisphaerica|type=transcript|length=906bp|location=Sequence derived from alignment at scaffold_167:1309017..1309922+ (Clytia hemisphaerica)
ACATAGCTTAGAATCACAATTCGAAGAATTCAAGGGAAGAGGGACCGGAC GAGAAGTTGTAACGGAACAATATCGCAAAGAACTACTGACAGGAAAAAGG CAACCGGTTAGTTTTATAAATTTACGAAATCCACTGATAAAATCTTGACA AGTTTAgagtttttagtcaaatttaCTACTTTAAACTTTACTTCAAATTT ACTTCCCTACCCTCGTCTCAGTTCAACCCGTCCTTGTTGATAATTTGAGT GGAACGAAAGGCATCCAAAAGAAAAGGGAATTTTAAGCTATCCAACAAGA TATGAATGATAAATAAATTCTCTCTAATTTCAGAGATATTGTAATCTAAA GTTAATTTTCTAAACATACTGTAAATTTAGAAACAATGGCTTCACTTCAC TACTTCACATTTAACTCCTTCTTGATTTCCATCGATACTCAatcattttt cttacttttgcACAGGTAGAGGAGCATTTGAAGTCGAGAAGGCCCAAGAC TTCTAAGAAGTGGCCTTTCAAAGACTCGatcctacccccttggaaaaaag aatgaatttttttcctcATTAACATTGACACGTTTATACACAATAATCCG ATGTTAACTGGAATTTCGATAATCCCAATGGACTTGTAATGAGACTGCAG AGAATTGAACCCGGGATCTCGAATCAACAACCAACACCCTAACTAACATG TGACCATGAaattattatagagactctggataaacatcaaatgAAACGGT GGAGTTGAGTATTGTCGTCCAattcagaaaacaatcaatgTACCGACTTT GTCCGCAAatgacaactgtcatggcggctccaaggactctgattttgaaa aatgatcaatactcttatttctaaaaagttctctatcttcttctatttat attttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031660XLOC_031660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049959-exon-scaffold_167-1491911889:1309017..1309122TCONS_00049959-exon-scaffold_167-1491911889:1309017..1309122Clytia hemisphaericaexon
TCONS_00049959-exon-scaffold_167-1510915933:1309017..1309122TCONS_00049959-exon-scaffold_167-1510915933:1309017..1309122Clytia hemisphaericaexon
TCONS_00049959-exon-scaffold_167-1575043694:1309017..1309122TCONS_00049959-exon-scaffold_167-1575043694:1309017..1309122Clytia hemisphaericaexon
TCONS_00049959-exon-scaffold_167-1491911889:1309482..1309922TCONS_00049959-exon-scaffold_167-1491911889:1309482..1309922Clytia hemisphaericaexon
TCONS_00049959-exon-scaffold_167-1510915933:1309482..1309922TCONS_00049959-exon-scaffold_167-1510915933:1309482..1309922Clytia hemisphaericaexon
TCONS_00049959-exon-scaffold_167-1575043694:1309482..1309922TCONS_00049959-exon-scaffold_167-1575043694:1309482..1309922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1309017..1309922 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.419855 0.204712 0.237691 0 0.424648 0.111854 2.29411 1.13703 1.06141 1.04362 0.850739 0.29747 0.418848 0.434978 0.298009 0.767543 0.472775 1.21145 0.583711 0.700555 0.40594 0 0.842445 0.65649 0.22539 0.100578 0.299929 0.768009 0.932012 0.949573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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