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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049952 ID=TCONS_00049952|Name=TCONS_00049952|organism=Clytia hemisphaerica|type=transcript|length=5493bpRun BLAST on NCBI transcript from alignment at scaffold_167:1248492..1268043+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049952 ID=TCONS_00049952|Name=TCONS_00049952|organism=Clytia hemisphaerica|type=transcript|length=19552bp|location=Sequence derived from alignment at scaffold_167:1248492..1268043+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049952 vs. Swiss-Prot (Human)
Match: FND3B (Fibronectin type III domain-containing protein 3B OS=Homo sapiens GN=FNDC3B PE=1 SV=2) HSP 1 Score: 411.764 bits (1057), Expect = 3.910e-120 Identity = 316/994 (31.79%), Postives = 489/994 (49.20%), Query Frame = 3
Query: 783 AIILTWDECI-LNNSHLQGCLF----DLQMSDT--RNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPPAAPEAPKSVDCGTNFIRLIWCEPDNNGAPVEE---YKLEM-EDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKWEPPRDSGGNEAISYILEVDDG--KGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPP-TCHKAEPNSLQLDWDEPET-GGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSLWSPVSTLTTXXXXXXXXXXXXXXFKTPTNLRLDWVEPVLHGAEVTSYTVEKLEDD-SFHKVYQGTCCFCEIKRNLNPATHYYFRIQAHSTAGDSSYSEVFTVEMPPSVPGPVTEIKVIEQTSNSCLVQWRHPIDHGARVYEYILEATGATSMICTAQRPNPSSLDVXXXXXXXXXXXXXXXXXXXXXXESDLDESDIEEGVSNESIHSEASSLTASKLNDEYMEYRLSGLTADASYRLRIQAVNSVGTGLFSHPIQFFTKEXXXXXXXXXXXXXXHHGIKLKWGNSSTK-KSLSVLNHCLQLQNKSGSFSQVYDGMSTSYTINKLNELTPYCCRIRSKNDAGEGDFSQPKIFYTKARPPPTIKDLECANITNTSLNITWSPIEKKLRPDDVMEYRLQMLDQETGK--DFKQVYQGPNHSYEVKDLKPESSYSFRVHAVRYLSESARTSTPTSSSEIKGAFSSPLLRAKTLSEKAMEESVENENLETTPQEDTQTCKLTDTHIALIILSTFLIICALIAGILRWVL 3707
A++L+W + L+ G F ++ +SD KYK I+SG+ +L+P T Y R+ A +N+ +G S+ VS TT P P ++ ++K+++TL+W API D GS IT+Y L+W +G + F G QK K + KL P +FR+ A N+IG+S +S + C T P P AP+ V G ++ L W +P+ G EE Y LE+ ED ND F KY GE + +NL+R+T Y FRL+ASN++G S PS + T P+ PG +P V G ++ S+KW+PP+D+GG+E + Y+LE+ DG + Q Y GS E+T ++LKPG YK+R S G S L TL + P C+PP + + + L+WD P + G ++S Y ++M + E +VY G + C V LLPGT Y F+++A N G +S VS +TTA PP P +S + + W P GA+++ Y +E ED+ S +Y GT EI R+L PA Y R+QA + AG YSE+ + P S P PV S C+++ P+D + + ++ + P + ++ + +D D V N ++H + L + +YR+RIQA+N +G G FS I+ T+ LPP PP L ++ +KLKWG+S++K + + + LQL++++ F +Y G S +Y + +L E T Y RI++ ++AGEG FS+ F T PPTIK + S I W + D + Y LQ+L G+ ++KQVY+G ++++ L+ + Y FRV A R + +S E+ GAFS SE + ++ + ++ TD A II+ F + L A IL++ L
Sbjct: 291 AVVLSWAPPVGLSCGPHSGLSFPYSYEVALSDKGRDGKYKIIYSGEELECNLKDLRPATDYHVRVYAMYNSVKGSCSEPVSFTTHSCAPECPFPPKLAHRSKSSLTLQWKAPI-DNGSKITNYLLEWDEGKRNSGFRQCFFGSQKHCKLT-KLCPAMGYTFRLAARNDIGTSGYSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPE--GCSPEEVITYTLEIQEDENDNL-FHPKYTGEDLTCTVKNLKRSTQYKFRLTASNTEGKSCPSEVLVCTTSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYSGSATEYTFTHLKPGTLYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGRPKHKEVHLEWDVPASESGCEVSEYSVEM-TEPEDVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADISEYRLEWGEDEESLELIYHGTDTRFEI-RDLLPAAQYCCRLQAFNQAGAGPYSELVLCQTPASAPDPV---------STLCVLE-EEPLD--------AYPDSPSACLVLNWEEPCNNGSEILAYT---------------------IDLGDTSITVGNTTMHV------------------MKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQSLKLKWGDSNSKTHAAEDIVYTLQLEDRNKRFISIYRGPSHTYKVQRLTEFTCYSFRIQAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPS--MKGDPVNYILQVL---VGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRRCLD--------TSQELSGAFSPSAAFVLQRSEVML-----TGDMGSLDDPKMKSMMPTDEQFAAIIVLGFATLSILFAFILQYFL 1202 HSP 2 Score: 202.986 bits (515), Expect = 2.004e-52 Identity = 164/583 (28.13%), Postives = 262/583 (44.94%), Query Frame = 3
Query: 750 IPPKTMAESPYAIILTWDECILNNSHLQGCLFDLQMSDTRNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTG-----LQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTS---AGPPAAPEAPKSVDCGTNFIRLIWCEP-DNNGAPVEEYKLEMEDPN-DGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKWEPPRDSGGNEAISYILEVDDGKGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPPTCHKAEPNSLQLDWDEPETGGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSLWSPVSTLTTXXXXXXXXXXXXXXFKTPTN---------LRLDWVEPVLHGAEVTSYTVEKLEDDSFHKVYQGTCCFCEIKRNLNPATHYYFRIQAHSTAGDSSYSEVF 2441
PPK S ++ L W I N S + L + + ++ F G + ++L P Y FRL+A + +S V C TL P PS R+++ T +TL+W+ P + +YTL+ + + +TG K K S TQ FR+ A+N G S S+V+ C TS GPP P V ++ + W P DN G+ + +Y LE+ D N + + Y G T Y +L+ T Y R ++ G S+ S + TL APG+ P+V G+PK + ++W+ P G E Y +E+ + + + +Y G + E T+ NL PG Y+ RV + + G G +S + + +T P C+ P + + W+ P++ GA IS Y ++ E + +Y G + +LLP Y ++QA NQAG +S + T S PD V + P + L L+W EP +G+E+ +YT++ L D S + G + ++L P T Y RIQA + G +S+
Sbjct: 383 FPPKLAHRSKSSLTLQWKAPIDNGSKITNYLLEWDEGKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSGYSQEVVCYTLGNIPQMPSAPRLVRAGITWVTLQWSKPEGCSPEEVITYTLEIQEDENDNLFHPKYTGEDLTCTVKNLKRS------TQYKFRLTASNTEGKSCPSEVLVCTTSPDRPGPPTRPLVKGPVT--SHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYSGSATEYTFTHLKPGTLYKLRACCISTGGHSQCSESLPVRTLSIAPGQCRPPRVLGRPKHKEVHLEWDVPASESGCEVSEYSVEMTEPE-DVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSGADISEYRLEWGEDEES-LELIYHGTDTRFEIRDLLPAAQYCCRLQAFNQAGAGPYSELVLCQTPASAPDPVSTLCVLEEEPLDAYPDSPSACLVLNWEEPCNNGSEILAYTID-LGDTS---ITVGNTTM-HVMKDLLPETTYRIRIQAINEIGAGPFSQFI 950 HSP 3 Score: 130.183 bits (326), Expect = 4.704e-30 Identity = 117/478 (24.48%), Postives = 203/478 (42.47%), Query Frame = 3
Query: 747 CIPPKTMAESPYAII-LTWDECILNNSHLQGCLFDLQMSDTRNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPP---------------AAPEAPKSVDCGTNFIRLIWCEPDNNGAPVEEYKLEMEDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKW-EPPRDSGGNEAISYILEVDDGKGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPPTCHKAEPNSLQLDWDEPETGGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQ 2129
C PP+ + + + L WD + S + + ++M++ + ++ G L PGT Y FR+ A + GP+SD TT P + + + W +P S G + I+ Y L+W G ++ ++ G +F+ LP C R+ A N+ G+ +S+++ C T A P A P++P + + L W EP NNG+ + Y +++ D S G T + ++L T Y R+ A N G S I T P P P+ S+ +KW + + E I Y L+++D + + +Y+G + + L Y R+ + S+AG+G +S ST P + P + E NS ++ W+ + NY++Q+ E E+KQVY G + +++ L TDY F++ A +
Sbjct: 674 CRPPRVLGRPKHKEVHLEWD-VPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWESPDSSG-ADISEYRLEW--GEDEESLELIYHGTDTRFEIRDLLPAAQYCC-RLQAFNQAGAGPYSELVLCQTPASAPDPVSTLCVLEEEPLDAYPDSPSAC------LVLNWEEPCNNGSEILAYTIDLGD-------TSITVGNTTMHVMKDLLPETTYRIRIQAINEIGAGPFSQFIKAKTRPLPPLPPRLECAAAGPQ--SLKLKWGDSNSKTHAAEDIVYTLQLED-RNKRFISIYRGPSHTYKVQRLTEFTCYSFRIQAASEAGEGPFSETYTFSTTKSVPPTIKAPRVTQLEGNSCEILWETVPSMKGDPVNYILQVLVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCACRR 1130 The following BLAST results are available for this feature:
BLAST of TCONS_00049952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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