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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049931 ID=TCONS_00049931|Name=TCONS_00049931|organism=Clytia hemisphaerica|type=transcript|length=2384bp
ATAATTTCCTTTGGATAAATATGTGCTATACGAAGGAGAAcgctataaaa
taaaatatctgTCATATAAAAAAGGAGAGTGTTGAATAGCAAATGCTATC
TAATGAATAGAATCTTTGGTGAATTAAACCTATTAAAAATTAATTGCCAT
GTTATATATGTGAAGTGAACAGATTTGTCGATGTGGTGTCttgttaaaaa
aagtaaaaggttgcaataataacattttttcaactgagaaattataaaag
aaaagactttttgtacaattatcaataaaaaagtATCAATATATAAACga
taaaaaatacattttgatatcaaaaaatAGTATTCAATGGATGAGTTAGA
CCGCCCTGGAGATATTCCACCTCCCAAGACATTGAAAACAAACGCCCAAC
ACACCATGGGAAACCGCCCTCCTGTTGCAATGGATCAAAGCGATGCTATG
GATGAAGTAGATCAAGTAGCGAAACCAACAATTTCACAAGCTGGGGAAAG
TGGAACAACTGAGCGCCCCTCGGTGATCATACCCGCCCCTGGTCAACAAC
AACCGCCCGACCTTGAACGTAAAGAGTCCGAAATATTATCCAGTATCGCA
ATGGACGAAACACCACCCGTTTTCCCGACTAANGATATTATCTAGTATCA
CAATGGACGAAACACCACCCGTTTTCCCGACTAAGAAGCCCGAAAAACCG
GTTGAAGAAATGCTTTCAACTATTGACATTCCTTTCGACAATGATAAATT
TCAACTAGAGGAGATACGACCTGAATCACCTGGCGCTGATGCGACGGACG
CCCCAGCTTCGAGCCAAACTGATGGTCCTTTTAcgtcaacatttttcaaa
ccaGCGCAACCGATCCAGCAATTAGTTCAACATCGTTCAGAACGTAAGAA
CAGAGAAGGGATTACCATCAAACATACCACTTATCACCCTAAACCTTTGG
AAAAGAATTCCAAAATGAGTGACCACGCATCGAACATTTATTCTGATAGT
TTTTACAAAATGGACTGTTTTCCACGTGGGAAATTAACATTGATCAATGT
TAAACATTTCACACGTGCTTCTGGTATGGGAGATTATCCACGTGAGGGTA
CCAATAGGGATGCAGAGGGCTTGACCGACTTATTTCTAGATCTTGGTTTT
GTCGTTGATCGTTTTGATAACCCCTCTAAGAAGGAGATCCTAGCCATTGT
CAAAGCTGCTGCAAATGAGGATTATTCAAAACAAGCGTGTTGCGCATGTG
CAATTTTGAGTCACGGCGAAGAAGGCATTATTTACGGTAACGACgatttt
gtgaaaattcgtGACATCACCAAAATGTTTCGTACGCGTGGCCTAGCTGG
GAAGCCGAAATTTTTCTTATTCCAAGCGTGTCAAGGCTCAGAGTACATGA
ATCCGTACGATGCAGTGGACGGGAAACCCGGTCAAAGATTATCAGAGGAA
GAAATGGCATTGACGCTACCGTCAGAAGCTGACTTTTTGTACGCTTACTC
CACGGTGCCTGGCTACTACTCTTGGAGAAATTCTAGACGGGGATCCTGGT
TCATGGAAGCATTGGTTCAAGTTTTCCGTGAAAATGCTCATCGTATGGAT
GTCATGCGAATGTTGGTTAGAGTCAATGATATCATTTCATATCGCAAATC
GCGTACTGATGAAATAAAAACCGATAATAAACGACAGATTGCTTCATTGA
TcactcaaatgagaaaagatttCTTCTTGTTCCCACCATACGGACCTTTG
AAACATGCTCAATAAACTCATGTTTTTGTGTAGGTAGTAGCTTCATTGCG
TTTTATTATAACTTTGATGTTGAATTATctcttatattttttaaaaattt
tgtataTAAAACTGGCACTCATCTTGGGTTCTAAAGACCCTTTAAAAAAT
ACTCCTGCTCAAGATGTTGATATACAATAAATTTGTATCAGTGCAAAGGT
CAGTGACTCCGGTAGTACTCCGGTGACGGAACACAGTTTCCGTGTTCAAT
GATCTTGAATAAAAGGAAAACTCGTGAAGGTTTCTGCCTGAAAGAAAACT
TGATTAAAGTTGATTTCTTCTTCAGTGGGAAAAACTAACAAAATTAACCA
GTGGGATAGTCTTCCATTTTCAACCAAGCCTAGTTTTTTAAACTCAGCTG
ATGATTGAGAAGAATAGGGGTATGgtttttgactgattttatgcgttaag
attttttaatatttgaattTATCATTATTTACCATCATCAAAATTGAGTA
TAATCGTTTATATTtaggaaagaatttttttgatatttataaaatgtgta
ttttgacgaaatttgtaaaaggaaaaatattgattgcttttatatttcat
tgattgaaaattgttttgaaaatttattttgtac Run BLAST on NCBI transcript from alignment at scaffold_167:1042333..1048520+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049931 ID=TCONS_00049931|Name=TCONS_00049931|organism=Clytia hemisphaerica|type=transcript|length=6188bp|location=Sequence derived from alignment at scaffold_167:1042333..1048520+ (Clytia hemisphaerica)
ATAATTTCCTTTGGATAAATATGTGCTATACGAAGGAGAAcgctataaaa
taaaatatctgTCATATAAAAAAGGAGAGTGTTGAATAGCAAATGCTATC
TAATGAATAGAATCTTTGGTGAATTAAACCTATTAAAAATTAATTGCCAT
GTTATATATGTGAAGTGAACAGATTTGTCGATGTGGTGTCttgttaaaaa
aagtaaaaggttgcaataataacattttttcaactgagaaattataaaag
aaaagactttttgtacaattatcaataaaaaagtATCAATATATAAACga
taaaaaatacattttgatatcaaaaaatAGGTGAGTATATTTTGAACGTT
TTTcaattgacatttttttaacatttccaTAGATAACAAAACTAAATAAT
AGtgtaatttaatatttttactAAAAGTCTCCCTCTTTTATGAGTTAAAG
CTTGAacccatttttatttgaattatttGTTTATATTCCCCTGGGGAGAA
CCCTTTTTCTTTATGGTTTGAGGGGTCTCTCTGTAGTTAGTATAGTTTTG
TGAAGTTAAAGAGTGTTAAAGTTCGTTCAAAACACACGAAAATATGGATA
AATTGtaagtttttgtattttatgaCATACAAGGCCATATCCTAAAAAGG
GAGATCTATCTATCTAAAAGGATCTACACGTTTNTTTTTAAAATCAAATG
TATGAAtggttcaatttttaatttcagaaatatATATTTCGTACTCTACT
GAGAGCCCGTTACTCGTATTATTTAAAAACAGAGACAAAGGATTGCAGGC
TAGAAATCAGACAGACagacaaaaattttccattgGCACAAGGCCCTATC
CTAAAAAGGGAGATCTAAAAGGATCTAAAAAGCTGAGAATGATTACTAAA
TTTATAATACGTAATAATAAGTCTTTTGAGCAAAATTCAAACTTgaagaa
gaaaatcttttttttactttctcgCCTTTCCTTATTccaattttaagaat
atttttcagaatttcctTCATATTCAATCTAGATGTAAAGAAGAAGTTGC
TTCCTTCCTAgtcaaaaaaagcaaaacgtaaACAAATTTGCAAAAAGGAA
GTTCTTCAGTCTTCATAGCTCTTGATCATTCATAGCAACAGTGTCTATAC
TatgttctttttctttcaagttTCAAATCGCTGTTCTTAGGTCTGTATTT
TATAGaggaaagattaaaaaaaaaattttttagcattttattTAGACTAA
TACATCTCCCTCTCACAGGGTGGGATTTCATctgccagtgggggtaaaaa
taactaaccaaaactcgatggggattgatattctatatttttttatggct
aaggatttgaattccattgtttcctagccagaaaattcagtggggatgga
aaaaagagcgcaatattttgcagtggggattTGCCTATATGACTATTTTC
AACGGGGACAAAAataagagtataattttccaccagggacgatactttga
ccaatttttccagtttgaagggtcccagtgggtctgtgagaagggggtgt
actaAGTCATTCAAATTTCCAGTTTCATTTTGCATTACATCTTCTTTAAA
ACCTCTAAAGCTTAGAACTTTAGAATAGCATAGAAGGACAAATTTTCAGA
CCAGGAAGTTGCTAAGAATAATTAGCTCACCTGAATCAACGATTCTGCGA
AATAGGAATGCCTATTTCTTCGTAGAAAGTCTTATCTCTTCTAATTTGAG
CGTTTTTTGTTAATGAACACTGCGAAATTGATTTGTTCAAAATTTACGGA
TTGTAATTGTCATTGAATTTACTCTAAAGTTTAGCTTTTTATCGAATTTC
GAGTTTTATGGCTTAAAAGTCGTCTTTGCATGCACgaatttttttactta
ttttcccTTGGATACTgtgtaattcatgatattcgtgacgtaatgctttc
tacggaaagaccccggtttttgccagtagtggcaaattttatacaacttt
cgCCTagttaaatttgccactactggttaacaccggggtatttccgtaga
aaacattacgtcatgaatattatgAATAAAGTTTCAAATCTCATCGTGTG
CCTTCTCTTTCTCAGAAGTCAGTGTTCGTTTTTGTTGTTCCATTGTTTAC
TCaagtttcaaattttatcataacatTTAAACATTATTTTCACACGGAAT
cttaaaaattctttgaatacCAATACTTTCTTTTGCTTTATTAAGGCTTT
AAAATTAgatcaaatttttataattGTTTCTGAAAATGTTTCCATACCAT
TATTAGGACTCGAGTCTTTGCCAATCGACATGATTTTGTCCAAGTAACTC
TCTACCCTATCAACATTTTCATGGTCTTTCTATTGACAATCATCATGTCT
CAATTCTCTCCAAACATTTACTTATCAATACCAACTAAAGAAAAGTGGGA
ATTTTTAAACGATCTTATCTCGCTTTTCATTGACTTATAAAGCCCCCTCT
AAAACCAATTTATCAGTTTATATTCGAAACAgtttttagtttaactttca
gTTATAAATAGCGAGTCATCTGTTGTGGCGTGGACTagttattacaattt
tagtcCAGTTTGGAATTTATTTTACTACTGTTTTCTTAAAGTTGTCTATT
TGCCAGGTTAGTCGACCATTATATAGTTATTTAGTTATATACTAATCTCC
TTCGAGCCTAATTACCGATGCACTTTCAAATTGTAACTTGATTAATTGTT
CAATTGCTCAAAATATGTATCGATGAATAATTACAAGAAATGTTAGTTAA
GATtatttatctatatattaaaCCTCTATTACCCAATTTACTAAGGAGAT
TTACCCCTGTCTCGATAAACCTTACTGATTTTCCATGACATACCTTTTAT
CTAGAACACTTTCAATAATTCAGGCTTCATTTCTTCCAGAAAATAACATT
CTTATTTGTCTTCCCATTTTTCAGTATTCAATGGATGAGTTAGACCGCCC
TGGAGATATTCCACCTCCCAAGACATTGAAAACAAACGCCCAACACACCA
TGGGAAACCGCCCTCCTGTTGCAATGGATCAAAGCGATGCTATGGATGAA
GTAGATCAAGTAGCGAAACCAACAATTTCACAAGGTAACTCATtataaaa
cactttttttataagaacatcaaatttCTTTGTAACCTTCGGACGCTCTT
TACTTTTTTGGTTatgagcctaaaaatgtccCTAACATGTTCCTCATTTT
ATGAGTAGTGTTGTCTATTTTTCTAggaaatcgggtgttttggaGTCCTC
AGCCAAagcattaaaatgtttttaacttgttcttatcgAGGGCTgatgtt
cttgtatagtttgctCATATAAGAAACCGTTTATTTTATCCCATAACAGC
TCATTAGGAAACCAAggtacagtggaacctctaattagcggacagcatcg
gggaaaggggttagtgtccgctaattagaagtgtccgccttttagaatct
tttgatctcggagctccaattttgaaattaggccatcccagggtgtcgaa
aatacaaaattggggtctaaagtacttatctgcagacactaggccataga
agaacaagaaaaatgttattaaaacgcaacaatttagtttttaactaata
aaagaaaatccaGAAATATAACACCAAGATTGAAAATAcaattcgttgaa
tgggtctcagtttttttttcgatttaggacgtctaattggagagctaaaa
taggggttttggccatttcgtgcgaaaaaaattgtccgctaatcagaggg
tccgctaattgagtgtccgccttttagaaacttttttatgaggatttgac
taggaaacgaccggggaaaatgaaattgtccgctaatcagagggtccgct
aattgagtgtccgccttttagaaacttttttatgaggatttgactaggaa
acgaccggggaaaatgaaattgtccgctaatcagaggtgcccgcatttta
gagtgtccgttaattagaggttttactgtagtTTCATTCTCTGCTCTGAA
GGGATTCGATGAATGTGAAACTTCCTTCGCTCTATATATAATTCAGATAG
CGCGCTGCATCTACCAGTTAAAATTGGTCTAGTTCTGATTGCTTGAGCTG
AAGGGTGAATTCACgttctttgatattttcatcCAAACCATGATATTTTG
CGAGCTCTGTATTTGTGGAATGTTGTAACTTGCTGCTATAAGCAAAGTAA
TTGTGCGAGAAATCAACCTTAATAAAACCTTGTATTTATTTTAGCTGGGG
AAAGTGGAACAACTGAGCGCCCCTCGGTGATCATACCCGCCCCTGGTCAA
CAACAACCGCCCGACCTTGAACGTAAAGAGTCCGAAATATTATCCAGTAT
CGCAATGGACGAAACACCACCCGTTTTCCCGACTAANGATATTATCTAGT
ATCACAATGGACGAAACACCACCCGTTTTCCCGACTAAGAAGCCCGAAAA
ACCGGTTGAAGAAATGCTTTCAACTATTGACATTCCTTTCGACAATGATA
AATTTCAACTAGAGGAGATACGACCTGAATCACCTGGCGCTGATGCGACG
GACGCCCCAGCTTCGAGCCAAACTGATGGTCCTTTTAcgtcaacattttt
caaaccaGCGCAACCGATCCAGCAATTAGTTCAACATCGTTCAGAACGTA
AGAACAGAGAAGGGATTACCATCAAACATACCACTTATCACCCTAAACCT
TTGGAAAAGAATTCCAAAATGAGTGACCACGCATCGAACATTTATTCTGA
TAGTTTTTACAAAATGGACTGTTTTCCACGTGGGAAATTAACATTGATCA
ATGTTAAACATTTCACACGTGCTTCTGGTATGGGAGATTATCCACGTGAG
GGTACCAATAGGGATGCAGAGGGCTTGACCGACTTATTTCTAGATCTTGG
TTTTGTCGTTGATCGTTTTGATAACCCCTCTAAGAAGGAGATCCTAGCCA
TTGTCAAAGCTGCTGCAAATGAGGATTATTCAAAACAAGCGTGTTGCGCA
TGTGCAATTTTGAGTCACGGCGAAGAAGGCATTATTTACGGTAACGACga
ttttgtgaaaattcgtGACATCACCAAAATGTTTCGTACGCGTGGCCTAG
CTGGGAAGCCGAAATTTTTCTTATTCCAAGCGTGTCAAGGCTCAGAGTAC
ATGAATCCGTACGATGCAGTGGACGGGAAACCCGGTCAAAGATTATCAGA
GGAAGAAATGGCATTGACGCTACCGTCAGAAGCTGACTTTTTGTACGCTT
ACTCCACGGTGCCTGGCTACTACTCTTGGAGAAATTCTAGACGGGGATCC
TGGTTCATGGAAGCATTGGTTCAAGTTTTCCGTGAAAATGCTCATCGTAT
GGATGTCATGCGAATGTTGGTTAGAGTCAATGATATCATTTCATATCGCA
AATCGCGTACTGATGAAATAAAAACCGATAATAAACGACAGATTGCTTCA
TTGATcactcaaatgagaaaagatttCTTCTTGTTCCCACCATACGGACC
TTTGAAACATGCTCAATAAACTCATGTTTTTGTGTAGGTAGTAGCTTCAT
TGCGTTTTATTATAACTTTGATGTTGAATTATctcttatattttttaaaa
attttgtataTAAAACTGGCACTCATCTTGGGTTCTAAAGACCCTTTAAA
AAATACTCCTGCTCAAGATGTTGATATACAATAAATTTGTATCAGTGCAA
AGGTCAGTGACTCCGGTAGTACTCCGGTGACGGAACACAGTTTCCGTGTT
CAATGATCTTGAATAAAAGGAAAACTCGTGAAGGTTTCTGCCTGAAAGAA
AACTTGATTAAAGTTGATTTCTTCTTCAGTGGGAAAAACTAACAAAATTA
ACCAGTGGGATAGTCTTCCATTTTCAACCAAGCCTAGTTTTTTAAACTCA
GCTGATGATTGAGAAGAATAGGGGTATGgtttttgactgattttatgcgt
taagattttttaatatttgaattTATCATTATTTACCATCATCAAAATTG
AGTATAATCGTTTATATTtaggaaagaatttttttgatatttataaaatg
tgtattttgacgaaatttgtaaaaggaaaaatattgattgcttttatatt
tcattgattgaaaattgttttgaaaatttattttgtac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049931-exon-scaffold_167-1491911889:1042333..1042662 | TCONS_00049931-exon-scaffold_167-1491911889:1042333..1042662 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1510915933:1042333..1042662 | TCONS_00049931-exon-scaffold_167-1510915933:1042333..1042662 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1575043694:1042333..1042662 | TCONS_00049931-exon-scaffold_167-1575043694:1042333..1042662 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1491911889:1045307..1045466 | TCONS_00049931-exon-scaffold_167-1491911889:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1510915933:1045307..1045466 | TCONS_00049931-exon-scaffold_167-1510915933:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1575043694:1045307..1045466 | TCONS_00049931-exon-scaffold_167-1575043694:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1491911889:1046627..1048520 | TCONS_00049931-exon-scaffold_167-1491911889:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1510915933:1046627..1048520 | TCONS_00049931-exon-scaffold_167-1510915933:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049931-exon-scaffold_167-1575043694:1046627..1048520 | TCONS_00049931-exon-scaffold_167-1575043694:1046627..1048520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1042333..1048520 + |
Blast
BLAST of TCONS_00049931 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 8.752e-53 Identity = 97/246 (39.43%), Postives = 150/246 (60.98%), Query Frame = 2
Query: 1004 YKMDCFPRGKLTLINVKHFTRASGMGDYPREGTNRDAEGLTDLFLDLGFVVDRFDNPSKKEILAIVKAAANEDYSKQACCACAILSHGEEGIIYGNDDFVKIRDITKMFR---TRGLAGKPKFFLFQACQGSEYMNPYDAVDGKPGQRLSEEEMALTLPSEADFLYAYSTVPGYYSWRNSRRGSWFMEALVQVFRENAHRMDVMRMLVRVNDIIS-YRKSRTDEIKTDNKRQIASLITQMRKDFFL 1729
Y M+ GK +IN K+F + +GMG R GT++DAE L F LGF V +++ S ++ ++K A+ ED++ AC AC +LSHGEE +IYG D I+D+T FR + L KPK F QAC+G+E + A G ++ +P EADFL+AYSTVPGYYSWR+ RGSWF++AL + E+ +++M++L RVND ++ + +S++D+ K+QI +++ + K+ +
Sbjct: 60 YNMNFEKLGKCIIINNKNFDKVTGMG--VRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPIND--TDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
The following BLAST results are available for this feature:
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