|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049930 ID=TCONS_00049930|Name=TCONS_00049930|organism=Clytia hemisphaerica|type=transcript|length=2008bp
aaacaaacatcttTAGGTTGTAAAAATGGAGTGGAATGATATGGAAGTAA
TGATCAAGCCAAATCAAAGTTTGAGGTAGTACATTGCACACATTTgcttt
actttttacttttgtcGAATTTTACTTAATGTTGATGTTTAATTGTTAAG
GAAACAATAATTTTTGAGTGTAATCATGGATTCAAGCGATGCAGAAGACA
ATGCAAGAGAAGTTGATATTTCCATGGCAGAATTGAGAAATTTTGATCCA
TCTGCACTGAGCTTATCGTACAACTTTAGGCCTGAAATTGTTCAGAAGCT
GACACTTTTTGGTAACGATTTGAACATTTTACCAGCCAGCATTGTACAGT
TTATTCACCTAAGACATTTGGACATTTCTTCAAACCGAATTTCCTGGATT
AGCGGTGAAGTTGCAAGATTGCCATTATTGAAAATACTTGATGCTCGAAA
TAATCGCCTGAACAACTTGccaaaagaaattgaacaaTGCCCCAAACTCT
TAACTTTGAATTTAAGTGGAAACCAATTTAAAGTTATTCCTACACAAGTC
TTCACACTGAGTCAATTGAAAGAGCTTTATCTTGGTGGGAACCAAATTGA
AAGTCTACCTCCTCAAATTCAGAGTTTAGAAAGCTTGGAGATGCTGTACC
TTGGTGGAAATAAGATTTTCCAAGTGCCACCACATCTTGGAAAACTAACC
AATCTACGGCATTTGGTTTTATGTGATAACAAAATTTCAACCATTCCTCA
AGAACTTGGTCAATTGAAGAAACTTGAATCTCTAAGTCTCcataaaaatg
aattgaaacTATTACCAATGGCAATTGTAATGCTTTTGAATCTACAAGAA
CTAACATTGAGAGATAACCCTCTTGTTCACACCTTTATTAAACGCCTAGA
ATTCAACACACCATCTTTGTTGGAGCTGGCTGGGCGAGTAGTAAAAACGC
AAAACATTCCATACAACAAAAGAGTATTACCAAAACGATTGTGCTCATAC
TTAGACAGTGCTAAAAGGTGTGTCAATCCTAAATGTGATGGAGTTTATTT
TGATTCTCGTATTAAATGTGTTAAATTTGTTGACTTTTGTGGAAAGTTCC
GCTTACCTTTAGAACAATATTTATGCTCACCATGTGATACTCACGAAGAG
TGTTGCGGTGATAGCAAATCGGTAAGCGCTCAAATGTTGAGGAAAGCCTT
ACTACCAGACAATGTTTAAAATTGGATTGTTGTATTTCACTATGGagatg
aaatttattttatgagatgggtagttttttatatttttgtacaaTCATAT
TTAGCTGTAAATTTAGCcattataaaattttaaagatctATTTTACCCCG
CAGGTTCTGATATAAATTCATATTTATTTACATACATTCTTTTGACACAA
GAGCTTTTGTTGcaagatttttaaaatagttcaaacCTGCTagataaaat
agaaaaaaagttaagcGTTTCCTTTTGCCTAAATTTTGCTGCTgttcagg
gatttttctaagcacttttttatgtccGTATACGACCGATGAGTTCTTGA
CACTCAATCCTGCTCaatccaaaatagaaaaaatattttcaagcaaaatt
aaacttttttattgtttacaaGCAAAAATAACTAATACAATTtacatatt
caaatttttttgagagcttaGCACTCTGAACCCTCTAGGGCTTCGCCCTG
AACCCACTTCAAAGCGCCCTCATATTAAAAACTCAAtctaaatttacaaa
aacagCACCAGCTCagagtgcttagaaaaatccctgctGCTGcttatttg
tttttgattctaacaaaaaaacattatttttgtaaatagctGACATcaca
attatttttttatttctaggcGATCATCTAGCTAAACCTTGCTTGGGACA
AGCCTGCTAGAACTACTAAgctagaatttttaaattttcttgaattttta
aatttgcttgaattgtaaatatttagctttttatttaaaaagaaaaaatt
ctctttga Run BLAST on NCBI transcript from alignment at scaffold_167:1033483..1041831+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049930 ID=TCONS_00049930|Name=TCONS_00049930|organism=Clytia hemisphaerica|type=transcript|length=8349bp|location=Sequence derived from alignment at scaffold_167:1033483..1041831+ (Clytia hemisphaerica)
aaacaaacatcttTAGGTTGTAAAAATGGAGTGGAATGATATGGAAGTAA
TGATCAAGCCAAATCAAAGTTTGAGGTAGTACATTGCACACATTTgcttt
actttttacttttgtcGAATTTTACTTAATGTTGATGTTTAATTGTTAAG
GAAACAATAATTTTTGAGTGTAATCATGGATTCAAGCGATGCAGAAGACA
ATGCAAGAGAAGTTGATATTTCCATGGCAGAATTGAGAAATTTTGATCCA
TCTGCACTGAGCTTATCGTACAACTTTAGGCCTGAAATTGTTCAGAAGCT
GACACTTTTTGGTAACGATTTGAACATTTTACCAGCCAGCATTGTACAGT
TTATTCACCTAAGACATTTGGACATTTCTTCAAACCGAATTTCCTGGATT
AGCGGTGAAGTTGCAAGATTGCCATTATTGAAAATACTTGATGCTCGAAA
TAATCGCCTGAACAACTTGccaaaagaaattgaacaaTGCCCCAAACTCT
TAACTTTGAATTTAAGTGGAAACCAATTTAAAGTTATTCCTACACAAGTC
TTCACACTGAGTCAATTGAAAGAGCTTTATCTTGGTGGGAACCAAATTGA
AAGTCTACCTCCTCAAATTCAGAGTTTAGAAAGGTAAATAATATTTACTC
ATCAATAGTTGTTTTGGCGAATGTGATGGTATTTTGTGAATACtgtaact
aattactccacagcaTGAAGGGGGGCTtgtacggtgtgacgggattggcc
cttttttagtacggtgtTACaggatttgacaaaaaaaagacgggaataTG
GCGCGCGAAAGCGCTATAAAATACTATCATTTTTATAATACTATCTtctt
caaatataatactatcttttcaaatataatattatcttttcaaatataat
actatcttttcaattataatactatcttttcaaatataatactatctttt
caaatataatactatcttttttttgaaatttatcactttcttttttttaa
cttaTTGCTATCTTTCCAGGCTCAGAAAAGTCGAGTTAAAAAAGGAGAGT
TACGAAAAAGTCAAGTTGagagcagtgccgtagcaactggggggcaaGAA
GGGGGGGCAATGTCCCCCAATAGTTTTTTCAAAAgtggttttctggaaaa
accgaatttaataatatttttttctttctatatCACAACTATTAAGCTAT
TTTGATGCGTTTTTAGACCATCTAGAGgctccaattttcaaaatcgccCT
ATGTCAATCAACTGTGATGTTACGCGCGttttattcttttgtttaaaatg
atataaaaaactGCAAACGTTTTGCAACGTCATCACATTTTTTACATGGC
AGTTAGACCTCCTTTTTAACCCGTCAATTTGTCTTTGCTTACATTTTCGA
GTTGGGAAATTGTAAGATGACGTTAACATGGTACAGATGGTATAtttgtg
acgtcacaaaatACATGCAGCTTATAACTCGAACTCGAGTTTTTCAACTC
AAACTTATTAACTCGACTTTTACGAGTAttatatatttgaaaagatagta
ttttttattaGAAGAAGATAGTATTATTTAttagaaaagatagtattata
ttagaaaagatagtattatattaGAAAAGATagtataatttttgaaaaga
tagtattatttttgaaaagatagtattatttttgaaaagatagtattatt
tttgaaaagatagtattataaaaAGGATAGTATTTTATAGCGCTTTCGCG
CGCCATACGGGAAAAcgatattttaaaatcagacggtgacggtatttggc
attattttttgtcattatgccggtatttgaacctgtacaaaccggtgtga
cggtgttattatttttttcaatttttcgggattccgggactCAGCAAAAA
CTTTGACAGGAAAGCGGTacttcgaacccctacaaacccccctcATGAgg
tacctagagacaagatgatttatcatgtttttattggctgagggaaagta
atgtatgtggagtaattagttattcaaaagactgtcgcGTTCGCCAAAAC
ATCTGTATTGTAGTTACGGTTAATAATCCACAAAAGCCTGCTCAACAAAA
ATATCACTTCCAATGATCCACTGATTGGTTATAATTTGGACAGGAGGGGC
TTTTGGGTTGTTTAACAGTACTGTGGTATCTCATGTTGAATGATTAAAAA
ACCTTTGTATTATAACAATAGGCCTTTGCTAGACACAATGCTAATTTGAC
TACATAATatcgtaacttggtctaatgtcgacacccctcctctaattccg
acacccctcctctaattctgacaccgtttttatcagctgaaatttataga
aatgttgaaactgtttttctttgcttagtggtcagagaggaataatcctt
tttcaatcagtgattcaagccttcatattattcctttctctaaagaaggg
tgtcggaattagacgagggatgtcgatattagaccaattTATGGTACAGA
TAATAAATCAGCTATGAAAATTACTTACATCAACAAAGTAATTCTGgctt
tcaatagaccttttacTAGGTCACACTATGTATGTCAACTTGGATATTTA
AAGATTTTAGCATAAATCAAGAAAGTCGAATGGATGCAAGAGAACCAACA
GCATTAGCTAAAGTTTGGTCCCTTGAGACttcaaaaccagtttttgccaa
ACTGACAAAGCCTTTTTTGGCTTAGTGACCCTtagaaagtcaattttcta
aACTGATTGTACCATCTGATATATAGCTTGAAGAATGCAACTCCAAAATT
GGCTCATTTACagtcttttttttataagcataaggAAAAATCAAGTAGAT
GCTCagtatgcttagcaaaatcttgttttcagccttaatttatgcttatt
tatatgcttagactttgttttgttgattttctttgagttcatggaaattt
cgaatttttaagtcGAAATATTGATTCGGCTTAGAGAATtacactttttg
gacctaccctaaggtagtcctttaaattaacccttgtccgtccgtccgtt
cgtctgttgccagcttttctcgggatcggctcattagttttttctatttt
tttgcacaatgatacaaaatggcaatgcccaaaatgtgacggagctcgat
tttcgaaaaaatttatttccggccgaaaatgccggaaatatgccggaaaa
accggttttttggcattttctcaagatttcatcattagttttttctgatt
tttTGCACAaagatgcgtattagcaatgcccaaaacttggctgagtccga
tttttgagaaaaaaatttttccggtcgaaaatgccggaaatatgccggaa
atcaccattttgcagattttcatcagcctttttccttatatttcgttgtt
ttttcacacaaaaacatttttgatagcaatgcccaccatgaagcatggtt
caatcgtcaatagaactgagttttgaagccggaactttctaaaaatcgcc
ggtgcagcccattttcgccggaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGCGAGc
cgtactttatatttttttatgaaattttgcacactgatgcaaaatgataa
tacctaaaatgtgacggagcctgattttggaaaagaaattttccggccga
aaatgccggaaatatgccggaaaaacaggttttttggcattttctcgaga
ttttatcattagttatttctgattttttgctcaaagatgcgtattaacaa
tgcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNagatgcgtattaacaatgcccaaaacatggccgagtccgatttttgag
aaaaaattttttccggccgaaaataccggaaatatgccggaaaaactgtt
tagttagcattttcttgagattttataattagctttttctgattttttgc
tcaaagatgcctaataacaatgcccaaaacatggccgagtctgttctgca
aattttgcagatttgaattgggctttttccatacatttctttgttttttt
cacttaaaaaaattattgataacaatgccaccatcaagcatgattcaatt
gtcaataaaacttttgcaattttgcaaccaGAACTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcagaactttctatttcttttttccc
taaacccctcccccccatcaacaatcaatgatgacatttaatgcattttc
gctaagcgctatattttcttaatggttgcttttctccttattgctatcta
agtttcatcatcaggtaggtccattcagcatgttgcttgttttgtaATTG
GGTGCCGGCAGGTGAAAATGTTTGgtctaaaaatgataaaacagctttaa
aagtaactctaaaaaggtcagcgttttagaaaagcaGCTGCACaagtttt
tttgcatttcagcttggaggtatgcttagctatgcttattttttaccaac
ttgagcctaagtatgcttataaacattAAGAAAACCTATACACGATTTGT
TATCTTAGCCCCTCATTAATGGACGATACATTTTCAAGAATGTAAATGTT
TATGCAGAGGCGCCAgatttttttggtgaaaaaaaaTACTCTGAACAGAT
CACAGCCACAGAAATATAAACTATTTtaaatgggataaacttttgtgGAG
ATTAAATTTCATGATATTGTGCCTTATACTGCTAAatctagcctgggtat
ccagattcaaaattttagaaaaaaaaactcttacctccacatacaaagtt
tctaaaattttagagtctggtgcaactaaaataaaccagctgcgctggaa
agtcagcccaaaAGGCTTAGAAGGCTTAGAAGTACAAATAAGAGATCTAG
CtttgttaaaatctgaaaaGCTTGAACGAGCGTATctatttgcttgaaac
gttcagACGAAAAAGTAGTGGTGCATAGTGGGATCCGCCGAAAGCAGAAG
TCGGTCAAACAAATTAATACCataattgaatttgaatttcgctCCTCAAA
ATGACAGTTGATGAATTAGCCAATGAAAGCTTGTTTTAGTTTCTCTTTTC
AAACTACCTCAGAAAAAAGGGCGATTTTTTATTGTCCAGTCACTTACTCA
TTTTTATTCAGTGAGTGAGTCCTGCGCTTGTTCAACTGttaaaaatgtga
gtccaaaattggactcacagctcgaacctgTCTAGTTTATATATCAGAga
tatcagattataaaaaaccctCGACGGGTGTCTTGTCATAACAACAcagt
aaaataaaataagacCCAAATAGAAGAATTTCTAAAAGTAGTATACAACT
TGACATTATTCAAAGAAAAGTAATTTCTTTAATACTCACTTTCTCTATAA
TTAGTTCTCtttctttatttacaatgcaaaagTATCTTTTATTAACTATT
GAATATGAagcaaaaaagaatctttttctttttttcttattattaattAT
ACGCGTCTTTTTATGTTATGTGTTTTTCTCGTCCTATATCTTactaagaa
aaaatattttcgcgCGCTAAGTTATTCCGAAATCCTGtttcccgaaaata
atccgaaatcggaattaaaacttaaagtcttaacgacgaccagcgggaaa
aaaattgtcaaaccGATTTGAAGAGTCACCTGGGCTGACTAAAAATCTGG
TACCATATGTGAATgtacccttgttgacagaatctcaaaactttggaaac
ccaggcatataattacttaccataaacGTCTTTCACAAActctaaaaact
ttcaaaacttttttaaactgcatcaaaacatcagccacatttataaaggc
tcctttccagcggccattttgtttagaaatgagcctgcgtttttattttc
atttgtttatttacaggggtcagctttttccaaaattctgctcagtgact
gggcgcgtttTAAATAATTAGATGCAATTGCATATGCAGGGACAAGTATC
CCTGCAGACAAGTTAGTTGGACTTGACCGTAAACCAGtgacaaaatattt
aaaaaactagacagtgaaatagtttacggtctggatatccaggctatgct
AAATCATACATGTTGTTTGTCGCTTTTTTGATGCCAGAAaacatttcttt
tctttttttcaataatgaacTTCTAAAATTGACTTTCTAAGGGTCTCTAG
ACCAAATGTCCCTTCAATACTCAATAGAAAATTTTCTTCAGCTTTTCCAG
CTTAAACAAAACCTAAGGGACCCatataacaagaaaacaaattaaaaaac
ctTTCATTTAGACTTCTCCTGGACTCACTGAATGAGAAATTACTGTAGCA
AagcattttcaagttttaaaacgTGCCTATAGTTGTATTTAATTTGTTTG
TGTCAGCCTGTTTTTCGCTTAGAGTTGCATACATTATCAAGTAAGTTTAC
CTTTTTCAAGGTGGAATTAATTATTCCCAGTTATCCCAAATcctttaaat
aatatttttaccTATTTCTTATAGCTTGGAGATGCTGTACCTTGGTGGAA
ATAAGATTTTCCAAGTGCCACCACATCTTGGAAAACTAACCAATCTACGG
CATTTGGTTTTATGTGATAACAAAATTTCAACCATTCCTCAAGAACTTGG
TCAATTGAAGAAACTTGAATCTCTAAGTCTCcataaaaatgaattgaaac
TATTACCAATGGCAATTGTAATGCTTTTGAATCTACAAGAACTAACATTG
AGAGATAACCCTCTTGTTCACACCTTTATTAAACGCCTAGAATTCAACAC
ACCATCTTTGTTGGAGCTGGCTGGGCGAGTAGTAAAAACGCAAAACATTC
CATACAACAAAAGAGTATTACCAAAACGATTGTGCTCATACTTAGACAGT
GCTAAAAGGTGTGTCAATCCTAAATGTGATGGAGTTTATTTTGATTCTCG
TATTAAATGTGTTAAATTTGTTGACTTTTGTGGAAAGTTCCGCTTACCTT
TAGAACAATATTTATGCTCACCATGTGATACTCACGAAGAGTGTTGCGGT
GATAGCAAATCGGTAAGCGCTCAAATGTTGAGGAAAGCCTTACTACCAGA
CAATGTTTAAAATTGGATTGTTGTATTTCACTATGGagatgaaatttatt
ttatgagatgggtagttttttatatttttgtacaaTCATATTTAGCTGTA
AATTTAGCcattataaaattttaaagatctATTTTACCCCGCAGGTTCTG
ATATAAATTCATATTTATTTACATACATTCTTTTGACACAAGAGCTTTTG
TTGcaagatttttaaaatagttcaaacCTGCTagataaaatagaaaaaaa
gttaagcGTTTCCTTTTGCCTAAATTTTGCTGCTgttcagggatttttct
aagcacttttttatgtccGTATACGACCGATGAGTTCTTGACACTCAATC
CTGCTCaatccaaaatagaaaaaatattttcaagcaaaattaaacttttt
tattgtttacaaGCAAAAATAACTAATACAATTtacatattcaaattttt
ttgagagcttaGCACTCTGAACCCTCTAGGGCTTCGCCCTGAACCCACTT
CAAAGCGCCCTCATATTAAAAACTCAAtctaaatttacaaaaacagCACC
AGCTCagagtgcttagaaaaatccctgctGCTGcttatttgtttttgatt
ctaacaaaaaaacattatttttgtaaatagctGACATcacaattattttt
ttatttctaggcGATCATCTAGCTAAACCTTGCTTGGGACAAGCCTGCTA
GAACTACTAAgctagaatttttaaattttcttgaatttttaaatttgctt
gaattgtaaatatttagctttttatttaaaaagaaaaaattctctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049930-exon-scaffold_167-1491911889:1033483..1034115 | TCONS_00049930-exon-scaffold_167-1491911889:1033483..1034115 | Clytia hemisphaerica | exon |
| TCONS_00049930-exon-scaffold_167-1510915933:1033483..1034115 | TCONS_00049930-exon-scaffold_167-1510915933:1033483..1034115 | Clytia hemisphaerica | exon |
| TCONS_00049930-exon-scaffold_167-1575043694:1033483..1034115 | TCONS_00049930-exon-scaffold_167-1575043694:1033483..1034115 | Clytia hemisphaerica | exon |
| TCONS_00049930-exon-scaffold_167-1491911889:1040457..1041831 | TCONS_00049930-exon-scaffold_167-1491911889:1040457..1041831 | Clytia hemisphaerica | exon |
| TCONS_00049930-exon-scaffold_167-1510915933:1040457..1041831 | TCONS_00049930-exon-scaffold_167-1510915933:1040457..1041831 | Clytia hemisphaerica | exon |
| TCONS_00049930-exon-scaffold_167-1575043694:1040457..1041831 | TCONS_00049930-exon-scaffold_167-1575043694:1040457..1041831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1033483..1041831 + |
Blast
BLAST of TCONS_00049930 vs. Swiss-Prot (Human)
Match: LRC58 (Leucine-rich repeat-containing protein 58 OS=Homo sapiens GN=LRRC58 PE=1 SV=2) HSP 1 Score: 255.758 bits (652), Expect = 1.353e-77 Identity = 140/277 (50.54%), Postives = 184/277 (66.43%), Query Frame = 2
Query: 314 NDLNILPASIVQ-FIHLRHLDISSNRISWISGEVARLPLLKILDARNNRLNN---LPKEIEQCP---KLLTLNLSGNQFKVIPTQVFTLSQLKELYLGGNQIESLPPQIQSLESLEMLYLGGNKIFQVPPHLGKLTNLRHLVLCDNKISTIPQELGQLKKLESLSLHKNELKLLPMAIVMLLNLQELTLRDNPLVHTFIKRLEFNTPSLLELAGRVVKTQNIPYNKRVLPKRLCSYLDSAKRCVNPKCDGVYFDSRIKCVKFVDFCGKFRLPLEQYL 1123
N L LP ++ F HL+ LD+S N ++ + E+ L L+ L A+NNRL LPK + Q P L LNLSGN F+ +P + L L+ L LGGNQ++S+P +I++L+SLE LYLGGN I ++PP LG L +L +LVLCDNKI +IP +L QL L SLSLH N L LP I+ L++L+EL+LR NPLV F++ L ++ P+LLELA R +K +NI Y LP L YL SA C NPKC GVYFD ++ +KFVDFCGK+RLPL YL
Sbjct: 54 NRLVSLPRALGSGFPHLQLLDVSGNALTALGPELLALRGLRTLLAKNNRLGGPSALPKGLAQSPLCRSLQVLNLSGNCFQEVPASLLELRALQTLSLGGNQLQSIPAEIENLQSLECLYLGGNFIKEIPPELGNLPSLNYLVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPREILNLIHLEELSLRGNPLVVRFVRDLTYDPPTLLELAARTIKIRNISYTPYDLPGNLLRYLGSASNCPNPKCGGVYFDCCVRQIKFVDFCGKYRLPLMHYL 330
The following BLAST results are available for this feature:
|
