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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049900 ID=TCONS_00049900|Name=TCONS_00049900|organism=Clytia hemisphaerica|type=transcript|length=934bp
caaaatttcaaatacaaaatttaaaatggtcAATAACCAACTGGAGGATA
TATGGGGAAACTTCCCTCAAAAGAAGATTAACGGATcagtgaaaagtttg
aaaatacaTTGTATGGCAAACATTAGTTATAATGTGGAACATTGGATGAA
TTACCTGCCAAATGATAAAANTGGGGAAACTTCCCTCAAAAGAAGAATAA
CGGATcagtgaaaagtttgaaaatacaTTGTATGGCAAACATTAGTTATA
ATGTGGAACATTGGATGAATTACCTGCCAAATGATAAAAGTCAGGAATTC
CAAAGCCCCCTTAAAGTTTTGGGTACCACAGATACAGTTGAGATATTGGA
GATGttgagaaagaaaatgaaatttatacCTGATCATCTATATTTGATTT
GCCACCAAAATCTCATTGGAATGGATTTCGATATATGGGAACTTTATGGC
GAAAGTTATTACATTGAACCTTGTACTCGAAAGATGCAAGAAAATCCGAA
GACTAACTTTGAGGGGAATTGAAATATCAAAAAGGATTCAAGATAGCATT
TTATCACTGGATCACTTGGTTGAATTACAGCTTGGTCGCATTGGCTACAA
ATTCATTGAAGAACTTCAAAAATGTGGTAATCTTAGATATTTAAGCTTTG
ATGCAAATGCTCTCTTTTTCAGAAATGTTAAAACATTAACCAATTGGGAG
TCGTTAGAATTCCTCTCAATTTTCAACGTCGGAGGTGAATTTGATTTGTG
AAGATTTCTATACATTTTGGAAGATGGTGTACGGGCTTCCATCACTTAAA
GCCCGTGTCACATCTTTTGAGAATTCGAATTTTCCTTCCCAAATCTAAAA
GTTCTTAACATGTATCAATGCATAGATCTAAGACATGAGGATTTTAAATC
CCTTCTGAAAGGTCTTAGAGATATCGAACATCTA Run BLAST on NCBI transcript from alignment at scaffold_167:431748..434301+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049900 ID=TCONS_00049900|Name=TCONS_00049900|organism=Clytia hemisphaerica|type=transcript|length=2554bp|location=Sequence derived from alignment at scaffold_167:431748..434301+ (Clytia hemisphaerica)
caaaatttcaaatacaaaatttaaaatggtcAATAACCAACTGGAGGATA
TATGGGGAAACTTCCCTCAAAAGAAGATTAACGGATcagtgaaaagtttg
aaaatacaTTGTATGGCAAACATTAGTTATAATGTGGAACATTGGATGAA
TTACCTGCCAAATGATAAAANTGGGGAAACTTCCCTCAAAAGAAGAATAA
CGGATcagtgaaaagtttgaaaatacaTTGTATGGCAAACATTAGTTATA
ATGTGGAACATTGGATGAATTACCTGCCAAATGATAAAAGTCAGGAATTC
CAAAGCCCCCTTAAAGTTTTGGGTAAGTGCATATCCAAAGGCTTTCGGCG
AGATATCTTCAGTATGTCTTTGTGGATATTTTACTGTAATTTTATAAGAG
ATTGATTTCTCTATCCTTTAAatgttgtttttaaaatttcttatatttta
ggCCTCGAAATCCGNTGGCGAGATATCTTCAGTATGTCTTTTTGGATATT
TTACTGTAATTTTATAAGAGATTGATTTCTCTATCCTTTAAatgttgttt
ttaaaatttcttatattttaggCCTCGAAATCCGTTTTAGTTCTTGTACT
TTTATTCTTATGAACGGTATTTTATACGAgaacaaaacaaactatatgag
aacacATGGCTTTagtggccaaaatattaagaacaattcaagaacatttt
aaggctctgcTGACTCTATAAATaccctttttttttaaagattacacAAA
ACTACTCACAAAataggaaaaaataagaacattttaagaatatttttggg
cTTAAATTTCACAAACCTAATAACATCCAAATGCTTCAAACATTCTtgtc
gttcttataaaaaacgtgtacgcgTAGCTAGTTTAAATTGTCCGGCAAAT
TGGAGTAACAGTAACTTAAAATGGAAAATGTCCTTATTTTGAATTAAGGT
ACCACAGATACAGTTGAGATATTGGAGATGttgagaaagaaaatgaaatt
tatacCTGATCATCTATATTTGATTTGCCACCAAAATCTCATTGGAATGG
ATTTCGATATATGGGAACTTTATGGCGAAAGTTATTACATTGAACCTTGT
ACTCGAAAGATGCAAGGTTGGTTAAAATTTCCATCATCTCGCTAACCCTT
ATTTTGGATGATAAActtaaagggattatcagatgatttttgatatttag
cttagagataccttttatGGTCCTAAGAGGTCCAAAGCTGggatagaatt
tgaattttcaaatttttactgaaAAACAAGAGAAATTTAACGTAAAGACT
GTGTAAAGACtaatttttagagatttcaaagtcaaatatgtcagctttgg
aaaaaaattgggtcaaaaaattcaaaggtgTCTTTCTGGTCCATAAAAGG
TATTTctaagccaaatatcaaaaatcagatgataccttatcggccaaaac
ttagtcggtcTTAAGTTACTAagttttggcttggtgactaaaattagggc
cgcctaaaaatttgggccgactaaaatttgggccgactaaaaatttgggc
caaattaaaagtttatgaTTTAGCTTTCCTTAACCCACTTTTCATATCGG
TATtactttaacaaagaatttacgAATATATgatttttagtcggtcttaa
ttattagtcggcccttggtgactaaattttgacaagtttgactaaaatta
gggccgactaataattaaggccgactaaaattaaggccgactaagttttg
gccgataaagTAATCCCTTTAAATATTCAAAGAAGGCCCGGGATTGGCTA
Aatggattttttaattttttgcacaataatgcaaaatggtaattcccaaa
attttacggagcccgattttcgaaaaaaatttccggtCACAAGATTCGAA
AATATCCGGGAAAAAGCAGTTTTCGTAATTTTcacgagattttatcatta
tttttcctaatatgtttttttttgttgattaggcaggtaggtccataaaa
gtagcaCTTGTTTTTTTTGGGTTAaaatcttatttatttttcatcttttg
actttctttaaaaaaaggtcagCTAACTTACAAACAATCATAGACAATGA
TTTCTTTTAGAAAATCCGAAGACTAACTTTGAGGGGAATTGAAATATCAA
AAAGGATTCAAGATAGCATTTTATCACTGGATCACTTGGTTGAATTACAG
CTTGGTCGCATTGGCTACAAATTCATTGAAGAACTTCAAAAATGTGGTAA
TCTTAGATATTTAAGCTTTGATGCAAATGCTCTCTTTTTCAGAAATGTTA
AAACATTAACCAATTGGGAGTCGTTAGAATTCCTCTCAATTTTCAACGTC
GGAGGTGAATTTGATTTGTGAAGATTTCTATACATTTTGGAAGATGGTGT
ACGGGCTTCCATCACTTAAAGCCCGTGTCACATCTTTTGAGAATTCGAAT
TTTCCTTCCCAAATCTAAAAGTTCTTAACATGTATCAATGCATAGATCTA
AGACATGAGGATTTTAAATCCCTTCTGAAAGGTCTTAGAGATATCGAACA
TCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049900-exon-scaffold_167-1491911889:431748..432069 | TCONS_00049900-exon-scaffold_167-1491911889:431748..432069 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1510915933:431748..432069 | TCONS_00049900-exon-scaffold_167-1510915933:431748..432069 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1575043694:431748..432069 | TCONS_00049900-exon-scaffold_167-1575043694:431748..432069 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1491911889:432696..432863 | TCONS_00049900-exon-scaffold_167-1491911889:432696..432863 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1510915933:432696..432863 | TCONS_00049900-exon-scaffold_167-1510915933:432696..432863 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1575043694:432696..432863 | TCONS_00049900-exon-scaffold_167-1575043694:432696..432863 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1491911889:433858..434301 | TCONS_00049900-exon-scaffold_167-1491911889:433858..434301 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1510915933:433858..434301 | TCONS_00049900-exon-scaffold_167-1510915933:433858..434301 | Clytia hemisphaerica | exon |
| TCONS_00049900-exon-scaffold_167-1575043694:433858..434301 | TCONS_00049900-exon-scaffold_167-1575043694:433858..434301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:431748..434301 + |
Blast
The following BLAST results are available for this feature:
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