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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049898 ID=TCONS_00049898|Name=TCONS_00049898|organism=Clytia hemisphaerica|type=transcript|length=1523bp
CTTTAACATCCGATTcaaaagcagaaattttttctttgtgcaTGGGATAG
GCTCAAATGACACTTTAGAAATATTGGAGTTACTGCTTAAGAATAAAACC
TTCCAACCAAATCATTTGAACCTCATATTAcatgaaaaattaacaagaat
GGATTTTGATTACCTATTGAAAGTGACTGATTATGAAATTAACAAGAAGT
CACTGCAAATTTACATCAAAGTTATGTTCCGTCGATGCAAGAGAATCAAA
TATCTCAGTATCGAAAACTTCCACATCTCGAAAGTCATTCGCCGAAGAAT
TGGAACCTATAAAAACTTAGAAGTCTTATTTCTCGGAGAGCCAAATGAAG
AAGTCATGCTCAAGCTCTCCAAATATTGCAATAGATTGAAAATGTTACAC
TTTCAATGGAGCCCCCTCAACGCTGAAAATCTACAATCAATATCCAATTT
TTCTGAATTACAATCTTTATCTATCAGATGTAGTCGATATACGAATATTA
GCCCCTTATGGTCAATTTTAAatggtttttcaaaattgacatCTTTGGTG
CTGGATAACTGTTCTTTACGTTATATTGAAGGTATCACCCAATGCAGAGA
TGTACTATCCAATTTAACTAAactttattttaatgaattttgtgATGTAC
CCTTTCGAGATTTGATATTAATTCTCACAAAATGTTTGGTTAACGTTGTG
GACTTGAAGCTACCACCAATTGAAGGAGAAGATATGAGTTGTTCAGAGAT
TTTAGACTCTGTTGCTCCACTCCAGTTTCTGAGGACCTTAGATTTATCGA
GAACTTACTACGAACTTACCGGGAATTTCCAAAGCTGTCTGATGAAGATT
GGATCTcgtctaaaagttttaaatctTTCATCATGCTCAAATGTAAATTT
GTGGATTGTCAGAAAGAATTGTGAAAATCTGGAAGAGCTTTATTCTTTGA
GTAACTATTTCATTATTCCAGAGAGGAGAGATAGAACTCAATCATTGAAA
CAAAATTACTGTCCGAAATTGAGACTGTTTCATTTAGAGTTATTCGTATC
TCGGATAGTGAGGCACAACTTGTCAAGCGATATTGAATTAAACAATGCCT
TGAAGGACATGATGTTCTTGGACAGTCCAAtctcaaatttgaaattaagt
GAATGTAACCAAGAAATCTTTGAATCGATTTTCAATGAAATGGAAAGTTA
TCATTTAGAGCGTTTGGAAATTTCGAGATGTATGTATGTTACAGTTGACA
ATGTGATCGAAATTCTTCTTAAGTTTGTTAACTTGAAATATTTGTCAATA
AACCACTGTCTCACAAGTCTCACAAGGGATGAGAAAAAACAAATCGAAGA
TTTTGTGAAACAGTCGAGGATTGATGTTactgtaaatattttaaaatgaa
atcacGACAAAATTAATTGTAAATTTTATATTGTATCTTATAgaaatata
tgtttttttaatttatgttGATTGGATAGTTCTTTTCATACGTTCTTCAT
TGAAGCCATTTGCAGAATACAAT Run BLAST on NCBI transcript from alignment at scaffold_167:428396..430629+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049898 ID=TCONS_00049898|Name=TCONS_00049898|organism=Clytia hemisphaerica|type=transcript|length=2234bp|location=Sequence derived from alignment at scaffold_167:428396..430629+ (Clytia hemisphaerica)
CTTTAACATCCGATTcaaaagcagaaattttttctttgtgcaTGGGATAG
GTAATCGCATAGTTCTTTTACAAGAATTACATTTACATCAAAGTGGCCCT
CATTATTcttaaaatctttcaattttaagctagaaaataccaaaaaaaaa
ttatcaaattataTTTACACTTCAAGTAATATCTCAATCTTGCGAAAAAG
AGAATGGAAAGAGACATAAAACTAATGATTTCAAAAACCCGACAATGGTT
TTAGCCTGATATATAACTAAAATGTGTGTATCTGATATATTCTTAATCTA
TTATTTCTAGGCTCAAATGACACTTTAGAAATATTGGAGTTACTGCTTAA
GAATAAAACCTTCCAACCAAATCATTTGAACCTCATATTAcatgaaaaat
taacaagaatGGATTTTGATTACCTATTGAAAGTGACTGATTATGAAATT
AACAAGAAGTCACTGCAAATTTACATCAAAGTTATGTTCCGTCGATGCAA
GGTATACTATATATAGTTTCACGCTGGAGGATAATAGTAAAGATAATAGT
CTTCAAGTGGAGTTGGAAGTGAATCTCCAATGTAGCTTACAATTTTTCAG
TAtattcccaaaatgatctttgCAGAAAAAATTACTGCCAGCTATCAGAT
TCGTGTCACAAATTAAAGTACTTTCTCCAAATACTAGAATAATCATTCTT
TCCTCTCATAGCCATAACCTAGAGAGCTATTCAGTAACTATCTTGGAGCT
TGGATAGAATCCCTTTTTTCACTACCCAGCTGGCAaccaacgttgtttca
acgtttatataacgttcacaacgtccatataacgttaaataaacgttaaa
acaacgttgtgtgccagctgggtgacTAAGCCGCACGGTGATTCATGTCG
CCTTATCACTCCCCTTCTCTGACATGTGTCTTTAATATGTTTTTCTACTT
AGAGAATCAAATATCTCAGTATCGAAAACTTCCACATCTCGAAAGTCATT
CGCCGAAGAATTGGAACCTATAAAAACTTAGAAGTCTTATTTCTCGGAGA
GCCAAATGAAGAAGTCATGCTCAAGCTCTCCAAATATTGCAATAGATTGA
AAATGTTACACTTTCAATGGAGCCCCCTCAACGCTGAAAATCTACAATCA
ATATCCAATTTTTCTGAATTACAATCTTTATCTATCAGATGTAGTCGATA
TACGAATATTAGCCCCTTATGGTCAATTTTAAatggtttttcaaaattga
catCTTTGGTGCTGGATAACTGTTCTTTACGTTATATTGAAGGTATCACC
CAATGCAGAGATGTACTATCCAATTTAACTAAactttattttaatgaatt
ttgtgATGTACCCTTTCGAGATTTGATATTAATTCTCACAAAATGTTTGG
TTAACGTTGTGGACTTGAAGCTACCACCAATTGAAGGAGAAGATATGAGT
TGTTCAGAGATTTTAGACTCTGTTGCTCCACTCCAGTTTCTGAGGACCTT
AGATTTATCGAGAACTTACTACGAACTTACCGGGAATTTCCAAAGCTGTC
TGATGAAGATTGGATCTcgtctaaaagttttaaatctTTCATCATGCTCA
AATGTAAATTTGTGGATTGTCAGAAAGAATTGTGAAAATCTGGAAGAGCT
TTATTCTTTGAGTAACTATTTCATTATTCCAGAGAGGAGAGATAGAACTC
AATCATTGAAACAAAATTACTGTCCGAAATTGAGACTGTTTCATTTAGAG
TTATTCGTATCTCGGATAGTGAGGCACAACTTGTCAAGCGATATTGAATT
AAACAATGCCTTGAAGGACATGATGTTCTTGGACAGTCCAAtctcaaatt
tgaaattaagtGAATGTAACCAAGAAATCTTTGAATCGATTTTCAATGAA
ATGGAAAGTTATCATTTAGAGCGTTTGGAAATTTCGAGATGTATGTATGT
TACAGTTGACAATGTGATCGAAATTCTTCTTAAGTTTGTTAACTTGAAAT
ATTTGTCAATAAACCACTGTCTCACAAGTCTCACAAGGGATGAGAAAAAA
CAAATCGAAGATTTTGTGAAACAGTCGAGGATTGATGTTactgtaaatat
tttaaaatgaaatcacGACAAAATTAATTGTAAATTTTATATTGTATCTT
ATAgaaatatatgtttttttaatttatgttGATTGGATAGTTCTTTTCAT
ACGTTCTTCATTGAAGCCATTTGCAGAATACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049898-exon-scaffold_167-1491911889:428396..428445 | TCONS_00049898-exon-scaffold_167-1491911889:428396..428445 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1510915933:428396..428445 | TCONS_00049898-exon-scaffold_167-1510915933:428396..428445 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1575043694:428396..428445 | TCONS_00049898-exon-scaffold_167-1575043694:428396..428445 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1491911889:428706..428896 | TCONS_00049898-exon-scaffold_167-1491911889:428706..428896 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1510915933:428706..428896 | TCONS_00049898-exon-scaffold_167-1510915933:428706..428896 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1575043694:428706..428896 | TCONS_00049898-exon-scaffold_167-1575043694:428706..428896 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1491911889:429348..430629 | TCONS_00049898-exon-scaffold_167-1491911889:429348..430629 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1510915933:429348..430629 | TCONS_00049898-exon-scaffold_167-1510915933:429348..430629 | Clytia hemisphaerica | exon |
| TCONS_00049898-exon-scaffold_167-1575043694:429348..430629 | TCONS_00049898-exon-scaffold_167-1575043694:429348..430629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:428396..430629 + |
Blast
The following BLAST results are available for this feature:
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