TCONS_00049891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049891
Unique NameTCONS_00049891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049891 ID=TCONS_00049891|Name=TCONS_00049891|organism=Clytia hemisphaerica|type=transcript|length=2587bp
atctttttcttaaagatataaGCAATCACGACGCttgaaaatgataaaca
ataaataaatcaatttttgtcctttttttctttcagagtaaaaataaaaa
tgaaaaatcatttgACTGTGAATATTGGCAACAATCCTCCCTCCATATTT
TACTGGTGTGATGCAGATTCATATGacaatttgaagaaaagtattgaaaa
aCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAACATCAAGGAATTA
TTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAACGATTGCAGTTT
GATATTAAACTTGATGTTATTATTGATGATAGTACTGGTAACTTGATTGA
TTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGGAAAAAAGTTCAG
GAATAAGGAATATAAAAATTATTGATTTATCTAGACACTTGTATCAATCC
TGTCAAATTATTTATAAAGATTTGGATATCAATACAACGGTACTAGATCT
GAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaatCGACTAAcagaa
taaattttatttatgGTAAACTTATGATTCTCACAGACAATCAATTGTTG
GTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCAATTCTCTTTCAA
TATCGTAGTTATCACAGTGGATGATTGTATATTCGATATGTTTGAGAATG
ATGATGAAAATACTACAATCAATATCAAATTCcgtgaaatcaaaatttca
atgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCCAATATTCGATAT
AGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCAAAGACATGTATC
AGATTCCTGTTGAAGAACAGACTATTGGATATCGTGACGGACCAATTTTT
ACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCGATCTTATCAACT
AGAAAATGTGGAGCTTCAACTATACGTTCATTACACTGACAAAACTGAGT
TAAAGGAAATTTATGCTCAGAACGATATAAAAATGATGGACCCTTTAAAA
ATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATTATAGAGGGAACAA
TGGACCATCTCTTAATGATTTTCTTCATGAAACCTTTGGAATTCGAAAAG
ATCTACAAAggtttattttctttgtaaatCAAAATCCTGTCAAATATTCA
caaattgacatttttagatttaaagaaaTCAGACTAGCAATTCAAGTAGA
TGATGATGAAACAGACTTATTGAAACACCTTAAACCATTAGGTTTATCTA
GAGTCGGTTCAATTATTATTAAATGCCCTAATACCGGTTCAGTTTTCTGT
AGTTTACCCTTATCGCAATGGGAATCTTTTGTCGATCCTGAAGATGTGTG
CAATGAGATTATTAAAAAACATCGAGAACTTTTCTATACAAAAATTTGGC
TTGCACATGATGGTAACAAGTTAGGCAAAGATACTATCATAGAAAGCTTA
TTTATcagagaaaatgaaattttggaaaacatCGAGTTAACCTTGTTCGT
CCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTAT
ACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGAT
TTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGAACTCAAAAGAACAAT
CTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTTGTTACA
AATTTAGTGATTTTCAGTTGGAAGGTtttatggaaatattttcactttta
acAGATGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACC
AGCAAAAGAATTACAAGTAGTTATCAAATGTGCTGGACATCTTCACAGTG
AAACTATCGATTTAAATATGAAGGAAACAGATACAATTTCAGATATTAAG
AAGGAAGTATCAAAAATTACCAATCATCCGTCTTCCATTATATCAATCCT
AAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATTTG
ATGACAATGACCAACTTTGGCATCTGAAACTTTCAGAAACCATTTCAATT
AAATTATATGCAATGTTGCAGGTATTGGTTTCGATTAAAGCTGATTTAAC
CATCCACCAACGTTCATTTCGAATTACCAACTTCAAATCCAATAGAATCA
GAAACATTGCACAAGTcttagaaaaagagaaaaagctTTTCGGGTCTACT
CCAAAGATTGTTACGAAACCAGGCATCACCCTGGAAACAAAGTTAATAGA
TATTGGTGAAGAATTAATTGAATTTGTTTCGCAGCCTTCCTCCACCAAAT
GTTTATTgtcatgaaaataatatttgtgTATCTTAAAGAGAAGTCATTTT
AACAGTAAAggttttttgcatgaaattgtTGTCTGTTTTTGATAAGTTTC
TTCGTTGATCTGCGATAGCTTTCTcttaattttccttgaaaaaataCGAA
ACTTTTTAGATTAAAAATCCAAAAGCTCTTTCAATAAATTTGCGAGTTCC
TAGATTTTTAAAACACTGGTAATGTTAATGTCTATTA
Run BLAST on NCBI

transcript from alignment at scaffold_167:412464..415050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049891 ID=TCONS_00049891|Name=TCONS_00049891|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at scaffold_167:412464..415050+ (Clytia hemisphaerica)
atctttttcttaaagatataaGCAATCACGACGCttgaaaatgataaaca
ataaataaatcaatttttgtcctttttttctttcagagtaaaaataaaaa
tgaaaaatcatttgACTGTGAATATTGGCAACAATCCTCCCTCCATATTT
TACTGGTGTGATGCAGATTCATATGacaatttgaagaaaagtattgaaaa
aCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAACATCAAGGAATTA
TTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAACGATTGCAGTTT
GATATTAAACTTGATGTTATTATTGATGATAGTACTGGTAACTTGATTGA
TTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGGAAAAAAGTTCAG
GAATAAGGAATATAAAAATTATTGATTTATCTAGACACTTGTATCAATCC
TGTCAAATTATTTATAAAGATTTGGATATCAATACAACGGTACTAGATCT
GAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaatCGACTAAcagaa
taaattttatttatgGTAAACTTATGATTCTCACAGACAATCAATTGTTG
GTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCAATTCTCTTTCAA
TATCGTAGTTATCACAGTGGATGATTGTATATTCGATATGTTTGAGAATG
ATGATGAAAATACTACAATCAATATCAAATTCcgtgaaatcaaaatttca
atgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCCAATATTCGATAT
AGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCAAAGACATGTATC
AGATTCCTGTTGAAGAACAGACTATTGGATATCGTGACGGACCAATTTTT
ACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCGATCTTATCAACT
AGAAAATGTGGAGCTTCAACTATACGTTCATTACACTGACAAAACTGAGT
TAAAGGAAATTTATGCTCAGAACGATATAAAAATGATGGACCCTTTAAAA
ATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATTATAGAGGGAACAA
TGGACCATCTCTTAATGATTTTCTTCATGAAACCTTTGGAATTCGAAAAG
ATCTACAAAggtttattttctttgtaaatCAAAATCCTGTCAAATATTCA
caaattgacatttttagatttaaagaaaTCAGACTAGCAATTCAAGTAGA
TGATGATGAAACAGACTTATTGAAACACCTTAAACCATTAGGTTTATCTA
GAGTCGGTTCAATTATTATTAAATGCCCTAATACCGGTTCAGTTTTCTGT
AGTTTACCCTTATCGCAATGGGAATCTTTTGTCGATCCTGAAGATGTGTG
CAATGAGATTATTAAAAAACATCGAGAACTTTTCTATACAAAAATTTGGC
TTGCACATGATGGTAACAAGTTAGGCAAAGATACTATCATAGAAAGCTTA
TTTATcagagaaaatgaaattttggaaaacatCGAGTTAACCTTGTTCGT
CCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTAT
ACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGAT
TTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGAACTCAAAAGAACAAT
CTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTTGTTACA
AATTTAGTGATTTTCAGTTGGAAGGTtttatggaaatattttcactttta
acAGATGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACC
AGCAAAAGAATTACAAGTAGTTATCAAATGTGCTGGACATCTTCACAGTG
AAACTATCGATTTAAATATGAAGGAAACAGATACAATTTCAGATATTAAG
AAGGAAGTATCAAAAATTACCAATCATCCGTCTTCCATTATATCAATCCT
AAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATTTG
ATGACAATGACCAACTTTGGCATCTGAAACTTTCAGAAACCATTTCAATT
AAATTATATGCAATGTTGCAGGTATTGGTTTCGATTAAAGCTGATTTAAC
CATCCACCAACGTTCATTTCGAATTACCAACTTCAAATCCAATAGAATCA
GAAACATTGCACAAGTcttagaaaaagagaaaaagctTTTCGGGTCTACT
CCAAAGATTGTTACGAAACCAGGCATCACCCTGGAAACAAAGTTAATAGA
TATTGGTGAAGAATTAATTGAATTTGTTTCGCAGCCTTCCTCCACCAAAT
GTTTATTgtcatgaaaataatatttgtgTATCTTAAAGAGAAGTCATTTT
AACAGTAAAggttttttgcatgaaattgtTGTCTGTTTTTGATAAGTTTC
TTCGTTGATCTGCGATAGCTTTCTcttaattttccttgaaaaaataCGAA
ACTTTTTAGATTAAAAATCCAAAAGCTCTTTCAATAAATTTGCGAGTTCC
TAGATTTTTAAAACACTGGTAATGTTAATGTCTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031630XLOC_031630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049891-exon-scaffold_167-1491911889:412464..415050TCONS_00049891-exon-scaffold_167-1491911889:412464..415050Clytia hemisphaericaexon
TCONS_00049891-exon-scaffold_167-1510915933:412464..415050TCONS_00049891-exon-scaffold_167-1510915933:412464..415050Clytia hemisphaericaexon
TCONS_00049891-exon-scaffold_167-1575043694:412464..415050TCONS_00049891-exon-scaffold_167-1575043694:412464..415050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:412464..415050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.52012	7.11712	4.31825	3.3581	2.32228	1.65222	3.51992	3.18306	0.828784	1.7443	1.69779	0.950993	1.19943	1.29385	1.27874	2.12251	1.5876	1.93946	1.27267	1.13704	2.38053	1.45972	10.3555	8.97972	0.545752	1.3341	2.21663	1.98795	3.83444	5.08498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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