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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049875 ID=TCONS_00049875|Name=TCONS_00049875|organism=Clytia hemisphaerica|type=transcript|length=484bp
cagcagagcatccccgtaacccattttgcccagCAGTCGGGTTCAATCTG
AATACAAGCTTGGTTAAACTGTAATAAATTAATAATAGGTTGCATATCGT
ATTCACTACATATGACTACATCAAGCCGGTTATGTTGCATTATGTTGTAT
ATACCGAATAAACCCGACTAGGTGAGGCAGCTGAAAGGACACACGAGAgg
aagttgaaattttttattctgaaattcatttcaaataaaCCATGACTACT
CTAATACTAGCAGGACTTGGTATTGCAGGTGCTGCATATGCTGGTAGGTT
TGCAATGCATGCTGCAAAAAGAGTGAATTGGAAACAGGTTCAGAAAGCAA
TGCCACAAATCCCAGAAATATCTTTGAATGCTTACTACAAAGGTGGCTTT
GAATCTAAAATGTCCAAGCGTGAAGCAGGGCTGATCTTAGGAGTCAGTCA
GAGTGCAAATCTTCAACGTATACGTGACTCGCNN Run BLAST on NCBI transcript from alignment at scaffold_167:273995..284251+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049875 ID=TCONS_00049875|Name=TCONS_00049875|organism=Clytia hemisphaerica|type=transcript|length=10257bp|location=Sequence derived from alignment at scaffold_167:273995..284251+ (Clytia hemisphaerica)
cagcagagcatccccgtaacccattttgcccagCAGTCGGGTTCAATCTG
AATACAAGCTTGGTTAAACTGTAATAAATTAATAATAGGTTGCATATCGT
ATTCACTACATATGACTACATCAAGCCGGTTATGTTGCATTATGTTGTAT
ATACCGAATAAACCCGACTAGGTGAGGCAGCTGAAAGGACACACGAGAgg
aagttgaaattttttattctgaaattcatttcaaataaaCCATGACTACT
CTAATACTAGCAGGACTTGGTATTGCAGGTAAATTTTCAATCTGCTTTTG
AATCGAATTCcatttgttttgtttcaaaatagacctttttttaaagaggc
agcagctgcataaatttttaaaatatgcatgatacagtaattatgcatgg
ctgtatcacagggctcgaaataacggtcggacatcggacattgtccgacc
caaatagcttcatgtctgacccaaaaatcatatttttcaagctaaagcaa
ccctaatcggacattttgtccgacccacttgaaatcgttatttcaaGGCT
tggtatcattgtttttatgctggagtacataattattcaacatggctgcc
tctttaaaaaaaggtctattgatcaAAACATCtttgtgtatttttttaaa
ttatgtaCAGTACCGTGAGTAGTCCTAAATTAGGGAGGTCAAACTCGCGC
ATATTTTCGGcgcgaaaaaaaagaaaaataggaaaaagagTCTTCGAGTG
ACTTTATTGACCCACAACTTACCCAATACTTTGAGTTTTGCAtccaaact
tttttccaaatagtAGAGAATTTATCAGAGATGAGAGAATAAAAAAAGCA
GGCAACAAAAGAATCCTTATAGCTTGGTCTTTCTGTTGGTAGcatttgtt
tttcattcaaatgaaTTGCTTCAATAGCGATTGCTATTTAAAACATGATG
GTTGAGAAGTTTTTAACCTCGCGCCAGCAGACCGCGTGTGTGTGACGTCA
TCTTTGTAGTCTGCTTCTGCGCcctattttggaatattttggtGCGCGCT
GCACTTTCGATTTGGCTTGGACGAGGTTGGACGTGTTTTGACCAAAAAAG
TGAGTTCTTCACAATCCATTTTTCTTATATCTTTTGAAGTACTTTATCAT
TTCTTAAAGGTTAtccctttttttcttcttatgtTTAGGGCTATCAGATA
GCCTACTTTTGTTTCTTCTGACTAAGTTTGAAGATTTAGCTGACTTCCCt
acctaaatccgacagccctgcctaaatccgatggggtatttcaaagatac
aaactaaaataaaaaaaactttttgctgtgacgcaacgaagatatataca
aaagtgtcaactaaactgagagactTGATACACTGAATCAATTGaacaaa
ataacaataattgcatCTTATACAAAcgtaattttttattgcaatatgta
cATCGTCATAAATGACAGTgtagggtggggcgtcaaatgtcaaagtcaga
aaattcaagatgtagtgtttttttaagaaaatttaacctattgtgaggca
ttctgcgcaatttttaaggtcaaaaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatcttatttttttcacttgc
tgtactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatattgg
attgaaaattgtgcccattggagccctaaacgagccgttttaagccaatt
ttgggtagcaaaatgctttttaaggcgaattttgcaagctcataaacttt
aaactgattgattcacatatctgaaattttcagagatagaagtcttcaat
aaagtctttaagcaaaatgaatttcaagtttttcacttttttcaaaaaat
cataatggcgtcttcaaaaatcgctttttagcaaaaaaaatcatatttct
caaaaaatagcattttttaaggaaagcttctacaaactgagtttaaatgc
tgactgaaattttttttgcagtgatagtattctggaaatactgcaggaaa
atcaaagtcatctgggcttgggatttgggtatatccaacATTTAATGATT
GATATGggtgctaaaacgcaatatgttaatcaaaaatccaaattttgact
caaaaaatcttaaaaatggcaatagacatgagcctaaaatctttttgcag
tgatagtcttctggaaattctccagggaaatcaaaatcatttgcgtctgg
gatgcgtctatgtccgccattatggaaataaaatccctgctaagagccat
ttttcaggcaaaaacccaaatttagactgaaaaaatctgtaaaatgtcaa
tagacatgggtgaaaatttttttgcagtgatagtattctggaaatactgc
aggaaaatcaaagtcatctgggcttgggatttgggtatatccaccatttt
gaaattgaaattcgtgctaaaacgcaatatgttaatcaaaaatccaaatt
ttgactcaaaaaatcttaaaaatggcaatagacatgaacctaaaatcttt
ttgcagtgatagtcttctggaagtANatttttgagtcaaaaattggattt
ttgattgaaatattgcgttttagcaggaatttcaatcccAAAATGGTGGA
TTTACCCAAATCCaaagcccagatgactttgattttcctgtagtatttcc
agaatactatcactgcaagaaaatttggacccatgtctattgacatttta
gagatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCTCTaata
tggcaatagacatgaacctaaaatctttttgcagtgatagtgttctgtaa
atattCTAGGGGTAAAAACTATTCAGGTATAAGATGCCTCTGGGACCGCA
ATTTTTAAACTGaagccagttttaaaatgttaatatttcaagctaaaatt
caatctttttttgacggaaCAAGTCTTGAAAATGTAAATGTAAGTGGGCC
ATAAGAATTGTTGAGTGAAATgggattttttaaatgatttatttcaacta
gtatttctaaattaaaggaTTGTAAATTCACATTCTTTGTTTAATgtaat
atacaaaatatttagtcaattatgatgtatcggatggaaatatgtagcat
tttaacagagatttcatttccataagggTGGATGTAAACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAggg
tggatgtaaacaaatctcagactgaaatgattttgttttcccaggaatat
tcacagaatactatcacttcaaaaaaatttgggtccatgtctatgtgtca
ttttaaggcaatttttattcaaaaacggggtttttgcttgaaacgttgta
ttttagccagttttaacacatatttcaattccataatgggggatataccc
aaatcctaacCCCAAacgattttgatttccctggagtatttccagaagac
tatcactgcaaaaaaagtttcagtcagcatttaaactcagtttgtagaag
cttgccttaaaaaatgctattttttgagaaatatgatttttttttgctaa
aaagcgatttttgaagacgccattatgattttttgaaaaaagtgaaaaac
ttgaaattcattttgcttaaagactttattgaagacttccatctctaaAA
ATTTAAGATATGTGAatcaatcagtttaaagtttatgagcttgcaaaatt
ggccttaaaaagcattttgctacccagaattggcttaaaacggctcgttt
agggctctaatggggacaattttcaatccaatatgattattttgttgttt
cttcataaaatttagtacagcaagtgaaaaaaataagatttgcaatagtt
ttgacatatttacaggcctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgcagaatgcctcacaataggttaaattttcataaa
aaaacactacatcttgaattttctgactttgcctcaaaaatgactgttga
cgccctaccctaaCAGTAgcaacagcatcataaaaaataatgattGTGTT
TTGACTTTCCAAAgcacaactcacactttttaataattacattaattgac
caCTTGACATTATAGCGATCATGCGTCAtgttagatgttttttttgagaG
TTCAATGCAaaagtttatcgttcaacttggagagggaatgtttgtaaaca
tagaattttttttcataacaattATTTGGGAgatcggaattaggcagggc
tgtcggatttaggaccattcaCGGTACACTTTGCCTTTTCACCCCGCTCC
AGTGTTTGAAAATATGTAAAgcattttcccaatttttttccATACCAGCC
ATTCACCCAGCATTTCCAGGGTATGACAGAAATCATAAAGACTTCTATgg
tttaccgtcaactgctctaaaaaCTTGGGATGGTTGGTTTGAAACATGGG
ATTGTTGATACCTGCCTTGTATTTTTACTTACTGTTaaaccgtgagtggt
cctacctccaacagccctgcctaaattcGATAGGatctttcaaaaaagta
aagatacaaattaaaataaaaacaaaccttttgccagtatagacctaact
cttcatacaaaaatataccttttttcaaagaggccaccctgttgaattat
tatgtagtccagcataaaaacaatgatatagccatgcataatttttacaa
tatgcatgaaacagtaattatgcatggctgtacatagtgcggaaaggggt
ctgatccccccttcttaaatgatcccccccttcttggcatccccccaacc
tttaaaaatacctatcccccaaggatttCAGGCTAAATTTTTTctggtaa
aaagggaagggaaacagtaaagaaaaattaagtctggcaaatatatacca
ctttttagtgaaaataaagaacttcctttcatgcagaccaaattTCATAA
CAGTGCTGGAAAATAATCTACgatatatgtaagcccccccttcttaaacg
atcccccctccttgctatccccccctttttagtaaaaatttctgatcccc
cccttcttcacttttttggaaggtgtcatcccccttAAATAAGGGGGGGT
TCGAACTatgctgtatcattgtttttatgctggactacataattattcaa
cagggtggcctctttgaaaaaaggtctattagagggggaaacgcatgttt
ggactttgtaccctatgctgcattgaagcacttttttaaaagccaaagtc
ccgcaaaggtgggacaaaaattagttttttgaagtttgcaaaaaaaacgc
cacatagaagatctttcaaattcagtatgtgaatagagcagtaaaaaata
caacttttctattttacctttttttgactaagctctaggaatgaaaataa
agggataatgataattgaatactacccattgatgatccgcggtactatcg
taaagctagaatcgcttcgcatactcttcgcttgagaaaatgattgacag
attcaaatttttcacccgCGGGAGCTCTCAGGAGTTCAGTGAGCGTTCTC
AGCTCAATTCTCGTACCgcactaaaaatggtagattgagctgtgatagat
catttcgatggaagttgttggaatgtttccAAGGCTCtcgacagaaaatc
gtttgttttattgtcaatgatgacagtgtggttattaattttgttagatc
tgacaaatttatgtttgtaagtgcactttattgttttgattcccattgaa
gaatcatattctggttttcatgttattagatgctgttttagagctttaga
gctagcctgtttGCTGTGACACAATGAAGATTGGTAACAAACTTggtacc
aaagtgtcaactaaactgagagatttgatacacattgatttgaaccaaat
tacaataattgtgcttcttatacaaaacatctttttattacataaattgt
caacgttttaaacacaagcaacaaattcagaataatagaggtgaTTATTT
TTACTACTCACactttttgatcacattaattgacatcttgacattatagc
catcttgttagatgttttgtttcgagagtccttgcaatagtttatcgttc
aactcagagaaggaatgtttgtaaacatagaattttttcataacagttat
ttggggtgtcggaattaggcagggctgtcggatttagaaCCACTCACGGA
Atcactttgacaacaaatttgttttgatacttccaccaagtttatcaatc
accTTCTTTGCCCTGTGCATTGTGCTCGATTgcacaaacaatgaaaatat
gatgtaatggCATCCATAGCGCAAACCAATGGGATTATGCaagcaaattt
tcatgtaattcatacacaaatatatttttgacagCATAAAAAGTATAGTG
TGTTTGGTGGTAACAAATGTtcgcgattttcacaaaaagatatatatacc
tttgatttcttgTAAGGCCTGGGTCACCAATAAGTTGTGTTTGTGTCACT
TCCAGACCCAAAATGTGAGTCAGTCGGTCGCTCGGCATCttaaatcatcg
aaaaaatgcgcTCTGAATAATGGCAATCGGGCGGTGCTAAAATCATCTGA
AAAATGCGCTCTGAGCATAGATTTGTTCAGGCGACAAGAATCATCGAGCG
CGTGAGCTGCATGTGATGTGATTATTTTGCATATTGCGACCGCGCAAAAA
GCATTTTCCCTAGAGTTTTTTAAcgcaaaaaatctttgaataatTGCTAA
TAAATATCTTAAAACACTCAAGATCAAAACGCTGGCTACGCTGAATCTAC
AAGCAAAACTTACATTGCTCAATGAAAACCACCCCCATGTAAAGTTAACA
GGTCTGAAAATACAGCGCTAGATTTAATGGGTTTTTGTAGATATCTGTGT
TGCAGTGTTTCACTaaggaatttttttcatatattttaaatttaaaagcc
TACCCGGTGCGAAAGAGATATTGTTTTTAATACGCGGTTtataaactcaa
atcaaatgactttggaggttcggtgaaatggtggccgaatcgCCAtccca
tttttgaaaaatgcccaaaaacaactttttgtcaTAGCTGATGAAGTCTT
AATGGATAAgtcttgaaattttacaatgtTGTGGGAAATACTAAGAcatt
atgaataaaaaattattttttcgttaattgagctaaaaatgtggcttcaa
ctcaaaatttgtatcttttttagaaatgtaAGCCACACAAATTAGATAAG
AGATCTTAGAATGGGACTTTCTTAACTTGACagaggaaaggttgaatttt
tcagaaaatgttaaatgtacatactttGTAGCTGttaaatgttgtttttt
gtGACTtacttttcgataatttttaatgtgactttgtaagccacaaaatt
gtacttacaacaaaatttttgtaattttttacacCTACAGGTGTTATACT
TTAATGATTGAGTGCCAAAAACTTAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCACCTATTCACCTATATATCCCTTGTGTAAGCCACATTTTTGCCC
ACTTAACAAACTGTAAGCCACAAATCAGTGCAGCTAATGAAAAATTTAGC
CCTTTGTTGCTGTCAATGCTGAAAAGATAGTATATTTCTGACTGTTTCCA
TTATTGAGAACTTTGGTAGGGTCAGCCACATGACCAGTAAGCCACATTTT
TTGCCCACACTTCATTTGCTTGTAACTCCCCTTAAAAGTAAGCCACAAAA
ATTCACCCTTTATGCAATGGATAGCTAATTTCCTCAGCTTAACCACCAAA
GCAATCCTAAGTGTAAGCCACATAATTTTCGCAAGTTATGGTCAATTTAG
Tggctgacagtaaaaatgtcacaaaacaggggtttatttttgattgggat
CCCAAGTTAGAtaatcccaagttagagcagttgacggtactgtTGTAAAG
TGTCACGACATCCCTAATCTAATCCCGATACCCTCTAGATATTTACCTAT
AGATAAGTTTTGCTCAAATTTGTACGATAATATCCTCCTGAATTAGCATG
GGATAACATTGCAAATTCCACCGTGCGATGTTCCGTATATAAAGTATTAG
GGAATTATTTCACGGTATATCGCTCATCAGCCAAGACTAAAACTCCTATA
TAGTCGTTTGAGAGAACACTAtggtctattgaataacaaattactccagc
aGAAACTAATTTACTCCAGCGTAGATTGTCAAGAAAACACCGTAAAAAAT
TCTGGAATGGAAGAAGAATTTAAAAATTACAATCaagttttttttggttt
tttgcacaaacccctgtaactatgggcaagtagcccgttgctaagatgtt
ggcttgaaatcatACATGGAACCACTGAAAGCAAAAGTAAAATTGGCTGG
CCAGCACTCCAAACCCCATAATCTTAATATAAGAGTTTTAGTCTAACTGT
CTGTAAATAAAAGATAAGGTGGCAGATACTttggaagaaaaagaaaaatt
ctaaagtggggggagggggtcataATGAAATGCTACACAGGTGATTTATG
GTTTTTCAGGTGCTGCATATGCTGGTAGGTTTGCAATGCATGCTGCAAAA
AGAGTGAATTGGAAACAGGTTCAGAAAGCAATGCCACAAATCCCAGAAAT
ATCTTTGAATGCTTACTACAAAGGTGGCTTTGAATCTAAAATGTCCAAGC
GTGAAGCAGGGCTGATCTTAGGTAAGCTTGATAACTAATACCTCAAGTCA
AAGGTATTTTATTCCTGTACAaaaagtattttcaacactCATTTTTTTCA
ACTGGCATAGGCTTTAAAAACCTTTCACTCCCAAAGGTTACAAAATGAAC
TAAATTCATGATAAGCTACATGTACAGGCGGCCATTCTTGTAGGATAGAT
TTTAAGATGTATAGTCATTCTAGTGTTGTTCTTCTTGTTACTTAAACGGC
TTTTTGTCCTTCCTCTTAGTAGTATAAGGTCAACATATCAAATTTTGTTA
CTTGGAGGTCTTTCATTTATTCCCTTTTTCAACTCgcattctttctttct
tttgtgaaTTGCTTTAATTATGTTACTGTTGGACACCAGAGAAAAGTGTA
GTTCCATCAGTGNTGCTTTAATTATGTTACTGTTGGACACCAGAGAAAAG
TGTAGTTCCATCAGTGAACGTTGAAAAGCTGTTCTCAGGATTTGGACCCG
GTTAGAAATATCATAAGATCCATGTTTTGTTGTATACTGATTCTCGAATT
TCTTACTTTAAAGGAGTCAGTCAGAGTGCAAATCTTCAACGTATACGTGA
CTCGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049875-exon-scaffold_167-1491911889:273995..274272 | TCONS_00049875-exon-scaffold_167-1491911889:273995..274272 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1510915933:273995..274272 | TCONS_00049875-exon-scaffold_167-1510915933:273995..274272 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1575043694:273995..274272 | TCONS_00049875-exon-scaffold_167-1575043694:273995..274272 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1491911889:283504..283665 | TCONS_00049875-exon-scaffold_167-1491911889:283504..283665 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1510915933:283504..283665 | TCONS_00049875-exon-scaffold_167-1510915933:283504..283665 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1575043694:283504..283665 | TCONS_00049875-exon-scaffold_167-1575043694:283504..283665 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1491911889:284208..284251 | TCONS_00049875-exon-scaffold_167-1491911889:284208..284251 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1510915933:284208..284251 | TCONS_00049875-exon-scaffold_167-1510915933:284208..284251 | Clytia hemisphaerica | exon |
| TCONS_00049875-exon-scaffold_167-1575043694:284208..284251 | TCONS_00049875-exon-scaffold_167-1575043694:284208..284251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:273995..284251 + |
Blast
The following BLAST results are available for this feature:
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