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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049874 ID=TCONS_00049874|Name=TCONS_00049874|organism=Clytia hemisphaerica|type=transcript|length=1486bp
AAAGTAATTATCGCAAGAGAATGCCTGAAGCAGTGGTAAATGCGGGTTTA
TTGTACAATAACATCAAAACTCGAAAGGAGAATTTATTGGAAGAGTCGGA
GGTCGAAATGAAAGAAGAAAAATTCCGTCAAGAAATTGGTCAACTACGAA
CTAAGCTCAAAGAGAAGAATACCGAGATGGACGAAATATCGAAGGAAAAT
GATCAGTTACGATTACAAGAGAAATCAGATCAAGAATTGTTTTGCATGGA
AAGAGTTCTTGAGCTACAAAAAGAGATCGATTTATGGAAAGACCGCTTGA
CAAGCCTACAAGAACAAGCTTTGGATGGTATGATATTGATGGACTCACTT
GATACATCAAGTCCTATACCGGACTCAGATGATGGTGTTCTTTATACTGG
TGATTCTAACGTTATTGATGAACTTGAGGCGTGCGAAGAAGAAAGAACAG
TTGATAAATTCGACAGTTCCAACGCTGATGTGATTGAAGCTCTGGCGAAT
TTCGATTATAGTGATACACTTAATCATTCTGAGGAAACGATAGAAACATT
GGTCGATTCTACAGATGATTCTATCACATTGCCGATGATTGCCAAAGCTG
TGTGCATCAAGCAGCATGATCCTCAGAATTGCCATTATCAGAAGTGTTTT
ACCGAAAGCCAGAAATCAATCACAGAATTGCTGAAGAGAATAAGAAACTT
GAGACTGAATGTTGATGAAAAACAGTCAAGAATTGAGTaccttgaaaaag
aaagaaagaaacttGGTGCAACTTTACATTCAGCTCGTAAGGAAAATGAA
GGCTTGGAAAATATCATTGAAAAGCTGCAGATCACGGTGAACGAGGCTGT
CAAAAAGAGCAATTCATTTGCATCGAAACTGAATCAAACTAAGGATCAAC
AAAATATGTTGGAACACTATATGGATAAAATGAGCAACGAACGCGAACAA
CGGTGGATTTACGAACAGTTATTGACCAATGCTGAAGGTGAAATCAAATG
CAGTGATACTCTTTCGAGAAGATTATCAAAAAGAATTGACGTTCAAAGTT
TAGAATCTCATGAAAGGAGGGATATCGATCATGTAATAAAAACAGGCTTA
GAAGAACTGAAAACTGTATTATTGAGTCGTAAGAAAAAGTCTATCTTTCC
ACGATGTGTTAAATCTTCTGACAAATCAAATCAAACACTCGACATTGTCA
ACACGTTACTGAAGGAAGTTGAGAATACTTAACATAACGAGAATCTAATC
TAGTCGTCTTGGTAATATTTGTAAGGAAGATGGAATTTAAGCTCttgtga
tttttattttcattttttggcaATAAACAAACGCGATAAAGTGTGGAAAA
AACATGCTGGTAGGACATTGTATTTCAGGAGCCTCTTGTTATACGAGATA
GGGATAGCATCGGTACTTAGATCAATGGTTgcagaaaacatttaaaacat
gaaaagcagtaaggaaataaaaaaatagaaatagtg Run BLAST on NCBI protein sequence of TCONS_00049874-protein >TCONS_00049874-protein ID=TCONS_00049874-protein|Name=TCONS_00049874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
SNYRKRMPEAVVNAGLLYNNIKTRKENLLEESEVEMKEEKFRQEIGQLRT
KLKEKNTEMDEISKENDQLRLQEKSDQELFCMERVLELQKEIDLWKDRLT
SLQEQALDGMILMDSLDTSSPIPDSDDGVLYTGDSNVIDELEACEEERTV
DKFDSSNADVIEALANFDYSDTLNHSEETIETLVDSTDDSITLPMIAKAV
CIKQHDPQNCHYQKCFTESQKSITELLKRIRNLRLNVDEKQSRIEYLEKE
RKKLGATLHSARKENEGLENIIEKLQITVNEAVKKSNSFASKLNQTKDQQ
NMLEHYMDKMSNEREQRWIYEQLLTNAEGEIKCSDTLSRRLSKRIDVQSL
ESHERRDIDHVIKTGLEELKTVLLSRKKKSIFPRCVKSSDKSNQTLDIVN
TLLKEVENT Run BLAST on NCBI transcript from alignment at scaffold_167:232978..234781+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049874 ID=TCONS_00049874|Name=TCONS_00049874|organism=Clytia hemisphaerica|type=transcript|length=1804bp|location=Sequence derived from alignment at scaffold_167:232978..234781+ (Clytia hemisphaerica)
AAAGTAATTATCGCAAGAGAATGCCTGAAGCAGTGGTAAATGCGGGTTTA
TTGTACAATAACATCAAAACTCGAAAGGAGAATTTATTGGAAGAGTCGGA
GGTCGAAATGAAAGAAGAAGTAAGTGTCTCTCCCTATTCCTTCTGGCTGG
CTTAGCCATTGTGCCCATAGAAAAAAGCTTATGTGATGACTGTGCTCTGG
TTCATGTAATGTTTGTGGCATAAGTCTAAGTATAAATATATGCATATCAA
AGAGTAGAACCATTCAGAGCAGTAAAATAATCATATAATTTTGATAGTAA
ATATTGAAAAGttggaaatcctgaaaataaCGGGTGTAAGTTTTCCTGTA
AAGTCCTAAATTGTAACGCCAGACCTTCCAAAAGGTTAATTCTACTTTTA
GGTTATACTAGACTACTTACATCTTCTTTAAATTCAGAAATTCCGTCAAG
AAATTGGTCAACTACGAACTAAGCTCAAAGAGAAGAATACCGAGATGGAC
GAAATATCGAAGGAAAATGATCAGTTACGATTACAAGAGAAATCAGATCA
AGAATTGTTTTGCATGGAAAGAGTTCTTGAGCTACAAAAAGAGATCGATT
TATGGAAAGACCGCTTGACAAGCCTACAAGAACAAGCTTTGGATGGTATG
ATATTGATGGACTCACTTGATACATCAAGTCCTATACCGGACTCAGATGA
TGGTGTTCTTTATACTGGTGATTCTAACGTTATTGATGAACTTGAGGCGT
GCGAAGAAGAAAGAACAGTTGATAAATTCGACAGTTCCAACGCTGATGTG
ATTGAAGCTCTGGCGAATTTCGATTATAGTGATACACTTAATCATTCTGA
GGAAACGATAGAAACATTGGTCGATTCTACAGATGATTCTATCACATTGC
CGATGATTGCCAAAGCTGTGTGCATCAAGCAGCATGATCCTCAGAATTGC
CATTATCAGAAGTGTTTTACCGAAAGCCAGAAATCAATCACAGAATTGCT
GAAGAGAATAAGAAACTTGAGACTGAATGTTGATGAAAAACAGTCAAGAA
TTGAGTaccttgaaaaagaaagaaagaaacttGGTGCAACTTTACATTCA
GCTCGTAAGGAAAATGAAGGCTTGGAAAATATCATTGAAAAGCTGCAGAT
CACGGTGAACGAGGCTGTCAAAAAGAGCAATTCATTTGCATCGAAACTGA
ATCAAACTAAGGATCAACAAAATATGTTGGAACACTATATGGATAAAATG
AGCAACGAACGCGAACAACGGTGGATTTACGAACAGTTATTGACCAATGC
TGAAGGTGAAATCAAATGCAGTGATACTCTTTCGAGAAGATTATCAAAAA
GAATTGACGTTCAAAGTTTAGAATCTCATGAAAGGAGGGATATCGATCAT
GTAATAAAAACAGGCTTAGAAGAACTGAAAACTGTATTATTGAGTCGTAA
GAAAAAGTCTATCTTTCCACGATGTGTTAAATCTTCTGACAAATCAAATC
AAACACTCGACATTGTCAACACGTTACTGAAGGAAGTTGAGAATACTTAA
CATAACGAGAATCTAATCTAGTCGTCTTGGTAATATTTGTAAGGAAGATG
GAATTTAAGCTCttgtgatttttattttcattttttggcaATAAACAAAC
GCGATAAAGTGTGGAAAAAACATGCTGGTAGGACATTGTATTTCAGGAGC
CTCTTGTTATACGAGATAGGGATAGCATCGGTACTTAGATCAATGGTTgc
agaaaacatttaaaacatgaaaagcagtaaggaaataaaaaaatagaaat
agtg Coding sequence (CDS) from alignment at scaffold_167:232978..234781+ >TCONS_00049874 ID=TCONS_00049874|Name=TCONS_00049874|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_167:232978..234781+ (Clytia hemisphaerica)
AGTAATTATCGCAAGAGAATGCCTGAAGCAGTGGTAAATGCGGGTTTATT
GTACAATAACATCAAAACTCGAAAGGAGAATTTATTGGAAGAGTCGGAGG
TCGAAATGAAAGAAGAAAAATTCCGTCAAGAAATTGGTCAACTACGAACT
AAGCTCAAAGAGAAGAATACCGAGATGGACGAAATATCGAAGGAAAATGA
TCAGTTACGATTACAAGAGAAATCAGATCAAGAATTGTTTTGCATGGAAA
GAGTTCTTGAGCTACAAAAAGAGATCGATTTATGGAAAGACCGCTTGACA
AGCCTACAAGAACAAGCTTTGGATGGTATGATATTGATGGACTCACTTGA
TACATCAAGTCCTATACCGGACTCAGATGATGGTGTTCTTTATACTGGTG
ATTCTAACGTTATTGATGAACTTGAGGCGTGCGAAGAAGAAAGAACAGTT
GATAAATTCGACAGTTCCAACGCTGATGTGATTGAAGCTCTGGCGAATTT
CGATTATAGTGATACACTTAATCATTCTGAGGAAACGATAGAAACATTGG
TCGATTCTACAGATGATTCTATCACATTGCCGATGATTGCCAAAGCTGTG
TGCATCAAGCAGCATGATCCTCAGAATTGCCATTATCAGAAGTGTTTTAC
CGAAAGCCAGAAATCAATCACAGAATTGCTGAAGAGAATAAGAAACTTGA
GACTGAATGTTGATGAAAAACAGTCAAGAATTGAGTaccttgaaaaagaa
agaaagaaacttGGTGCAACTTTACATTCAGCTCGTAAGGAAAATGAAGG
CTTGGAAAATATCATTGAAAAGCTGCAGATCACGGTGAACGAGGCTGTCA
AAAAGAGCAATTCATTTGCATCGAAACTGAATCAAACTAAGGATCAACAA
AATATGTTGGAACACTATATGGATAAAATGAGCAACGAACGCGAACAACG
GTGGATTTACGAACAGTTATTGACCAATGCTGAAGGTGAAATCAAATGCA
GTGATACTCTTTCGAGAAGATTATCAAAAAGAATTGACGTTCAAAGTTTA
GAATCTCATGAAAGGAGGGATATCGATCATGTAATAAAAACAGGCTTAGA
AGAACTGAAAACTGTATTATTGAGTCGTAAGAAAAAGTCTATCTTTCCAC
GATGTGTTAAATCTTCTGACAAATCAAATCAAACACTCGACATTGTCAAC
ACGTTACTGAAGGAAGTTGAGAATACTTAAAGTAATTATCGCAAGAGAAT
GCCTGAAGCAGTGGTAAATGCGGGTTTATTGTACAATAACATCAAAACTC
GAAAGGAGAATTTATTGGAAGAGTCGGAGGTCGAAATGAAAGAAGAAAAA
TTCCGTCAAGAAATTGGTCAACTACGAACTAAGCTCAAAGAGAAGAATAC
CGAGATGGACGAAATATCGAAGGAAAATGATCAGTTACGATTACAAGAGA
AATCAGATCAAGAATTGTTTTGCATGGAAAGAGTTCTTGAGCTACAAAAA
GAGATCGATTTATGGAAAGACCGCTTGACAAGCCTACAAGAACAAGCTTT
GGATGGTATGATATTGATGGACTCACTTGATACATCAAGTCCTATACCGG
ACTCAGATGATGGTGTTCTTTATACTGGTGATTCTAACGTTATTGATGAA
CTTGAGGCGTGCGAAGAAGAAAGAACAGTTGATAAATTCGACAGTTCCAA
CGCTGATGTGATTGAAGCTCTGGCGAATTTCGATTATAGTGATACACTTA
ATCATTCTGAGGAAACGATAGAAACATTGGTCGATTCTACAGATGATTCT
ATCACATTGCCGATGATTGCCAAAGCTGTGTGCATCAAGCAGCATGATCC
TCAGAATTGCCATTATCAGAAGTGTTTTACCGAAAGCCAGAAATCAATCA
CAGAATTGCTGAAGAGAATAAGAAACTTGAGACTGAATGTTGATGAAAAA
CAGTCAAGAATTGAGTaccttgaaaaagaaagaaagaaacttGGTGCAAC
TTTACATTCAGCTCGTAAGGAAAATGAAGGCTTGGAAAATATCATTGAAA
AGCTGCAGATCACGGTGAACGAGGCTGTCAAAAAGAGCAATTCATTTGCA
TCGAAACTGAATCAAACTAAGGATCAACAAAATATGTTGGAACACTATAT
GGATAAAATGAGCAACGAACGCGAACAACGGTGGATTTACGAACAGTTAT
TGACCAATGCTGAAGGTGAAATCAAATGCAGTGATACTCTTTCGAGAAGA
TTATCAAAAAGAATTGACGTTCAAAGTTTAGAATCTCATGAAAGGAGGGA
TATCGATCATGTAATAAAAACAGGCTTAGAAGAACTGAAAACTGTATTAT
TGAGTCGTAAGAAAAAGTCTATCTTTCCACGATGTGTTAAATCTTCTGAC
AAATCAAATCAAACACTCGACATTGTCAACACGTTACTGAAGGAAGTTGA
GAATACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049874-exon-scaffold_167-1491911889:232978..233096 | TCONS_00049874-exon-scaffold_167-1491911889:232978..233096 | Clytia hemisphaerica | exon |
| TCONS_00049874-exon-scaffold_167-1510915933:232978..233096 | TCONS_00049874-exon-scaffold_167-1510915933:232978..233096 | Clytia hemisphaerica | exon |
| TCONS_00049874-exon-scaffold_167-1575043694:232978..233096 | TCONS_00049874-exon-scaffold_167-1575043694:232978..233096 | Clytia hemisphaerica | exon |
| TCONS_00049874-exon-scaffold_167-1491911889:233415..234781 | TCONS_00049874-exon-scaffold_167-1491911889:233415..234781 | Clytia hemisphaerica | exon |
| TCONS_00049874-exon-scaffold_167-1510915933:233415..234781 | TCONS_00049874-exon-scaffold_167-1510915933:233415..234781 | Clytia hemisphaerica | exon |
| TCONS_00049874-exon-scaffold_167-1575043694:233415..234781 | TCONS_00049874-exon-scaffold_167-1575043694:233415..234781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:232978..234781 + |
Blast
The following BLAST results are available for this feature:
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