TCONS_00049856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049856
Unique NameTCONS_00049856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049856 ID=TCONS_00049856|Name=TCONS_00049856|organism=Clytia hemisphaerica|type=transcript|length=320bp
cccggtggcccgtgcgtcatataggaacacgattcatgggccacccagtg
cccgtgcgtccggaaagggttaataaTGAATATTCCTGACGTAATTGGTG
AAAACGATGAAATCGTTGAACTTTACGACaagctttaaaatgaaattcaa
aaagaagaATGACTACTCGATTATCCCCGGCGCCGAAAAGCCATTAGCGC
CAAAAAGTAGGGCCAGTCATTACCCTTCATCATACACAgcaatctcattg
gttgaaGTTAACAAAAAACACACCGATGGAGCAAATTACTACAGAAGCAA
CTGACAGACTGAGAAGAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_166:648705..649024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049856 ID=TCONS_00049856|Name=TCONS_00049856|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_166:648705..649024 (Clytia hemisphaerica)
TCTTCTTCTCAGTCTGTCAGTTGCTTCTGTAGTAATTTGCTCCATCGGTG
TGTTTTTTGTTAACttcaaccaatgagattgcTGTGTATGATGAAGGGTA
ATGACTGGCCCTACTTTTTGGCGCTAATGGCTTTTCGGCGCCGGGGATAA
TCGAGTAGTCATtcttctttttgaatttcattttaaagcttGTCGTAAAG
TTCAACGATTTCATCGTTTTCACCAATTACGTCAGGAATATTCAttatta
accctttccggacgcacgggcactgggtggcccatgaatcgtgttcctat
atgacgcacgggccaccggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031615XLOC_031615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049856-exon-scaffold_166-1491911889:648705..649024TCONS_00049856-exon-scaffold_166-1491911889:648705..649024Clytia hemisphaericaexon
TCONS_00049856-exon-scaffold_166-1510915933:648705..649024TCONS_00049856-exon-scaffold_166-1510915933:648705..649024Clytia hemisphaericaexon
TCONS_00049856-exon-scaffold_166-1575043694:648705..649024TCONS_00049856-exon-scaffold_166-1575043694:648705..649024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:648705..649024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51167	2.27781	0.975875	2.86769	0.823942	1.43953	0.490028	0.525698	1.12857	2.30143	2.332	0.479515	1.74759	1.1761	0.456937	0.445598	0.742418	0.811258	0	1.9476	2.31114	2.06012	0.970372	1.04989	2.40183	0.405958	3.24878	0.820459	2.59484	2.17706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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