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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049830 ID=TCONS_00049830|Name=TCONS_00049830|organism=Clytia hemisphaerica|type=transcript|length=1618bp
TTTTCTAATCCCCAATGAGAAGTGTCGGAATtcgatgagggatgtcgaca
ttagaccaacttgcAGTAATAGGTAATATTATACACACAACGCCAAATAA
AAACTAAGAAGCaatcaaaaacgttaaaattcaTCGTTATAAAAAACAGT
GTTATAACACATCAGGAGAGACATTTGTTCTCTTCATAGTCATAAAACAA
ATCcatgattttcttcttcaaacgAGGCCAATCACTCATTTCACATTGTA
ATAAACTATCCGCTACTACAAGTCCGAAACGCTGTGCACTCTCCTCCCGG
TGTTTATCACTTAGGGTCGTTCCAGTTGCTAGAGATTGATAATTATTAAC
CGGGACTTTCAAAGCTGGTTGGTTCAGGCTGTGATTTGGTGTTCCAGCAT
TGCTTATAGAGTCTTTAGTACTGTAGCTATCGATGATTCTCACATCATTG
GAAGGGCTTTGTTCTCGAGTTTGGACGTATTCCACAGAGTCCTCAGAACT
TAAAGTACCAGGTACTGTTTCTAGATTTTGATATGATTTTGAAACTACAA
ACGAAGGCGTAACATCCAAGGCGGCGATTTTATGGGGTGGTTCTAAGGCG
TTCTCATTGTCTTGTAAAGTGTTTGTTATTGGTTTTTTTGATCCACCCAA
AGTGACACCTGCTAGTCTGAAAGGCTTCTTTGAGCTATGGGAAGTAGATT
CTTCTGAAGGCGGGGGCGTGTTACTGTTCTGTGGCGTCTTTCTCTGATGT
TCTGGGCGGGATTTCTCTATATTAGGCGGTTGAGAGACTCGTTGTTTTTT
GGTGGGCGGGTCATCTAAAATACTTGGGAAATTACATTGTTCATCTAACT
CATACATACATTCGTAAAAACTCCAAGATGGATTATAGCCTTGAAACTTG
TTAATCCATAATTTCTCTTGTCTATACCGATCAACGAGTCCTTCAAAGCG
CGATTTAATTTGTCGTACAGTGAATCTATCATCAAGATCGGTTGCTAGTC
TATTCAACAGTTCAACATGAAGTTCGATTCCGATTGGATTACGATTTAAC
AATATGTTATTCTCTCTATAAAACTCGATCATTCTCAATAAATCTTGCTC
CTCAAAATCAGAATGTCGtttctttcctttcaataaaacgTCCTTCAGAA
ATAACATGTCGTCGTAAAAACGCCATTTTCGCTGCCACTGGTTTATTCCT
GATCTCGAAAGTTTCACTTCTCGTAACATGCTCGTTCGTAAAATCAAAAA
CGCTCTTTCCAATACCTCAGCTGTATGTTGACCGTCAAACAAATCAACCA
TTTTCTGTCTTAAAGCAGCTTTCTCGGTTTTACTTTTCTGATACGGTAAA
CGTTCCCAAAGTATGGGATTTTCTTTATAGAAGTTGATTAAAGTTCGTTT
TTCTTCGTCATTTAATTTTCGAGATTCTTCACCGTTTTCGGGGAACATAT
CGGGATTATCGGTGACTTCATCGTCACATGGGTCGATTATAACAATCATG
TGTTCATCTTTTGGTGTGATGTTATTGGTAACACTATTGTTTATATCTGA
CATGTTANAACTCTGATACACGTCTTTtcatttaagaacatccaaaagta
tTGTCTACAACTGACATG Run BLAST on NCBI protein sequence of TCONS_00049830-protein >TCONS_00049830-protein ID=TCONS_00049830-protein|Name=TCONS_00049830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MSDINNSVTNNITPKDEHMIVIIDPCDDEVTDNPDMFPENGEESRKLNDE
EKRTLINFYKENPILWERLPYQKSKTEKAALRQKMVDLFDGQHTAEVLER
AFLILRTSMLREVKLSRSGINQWQRKWRFYDDMLFLKDVLLKGKKRHSDF
EEQDLLRMIEFYRENNILLNRNPIGIELHVELLNRLATDLDDRFTVRQIK
SRFEGLVDRYRQEKLWINKFQGYNPSWSFYECMYELDEQCNFPSILDDPP
TKKQRVSQPPNIEKSRPEHQRKTPQNSNTPPPSEESTSHSSKKPFRLAGV
TLGGSKKPITNTLQDNENALEPPHKIAALDVTPSFVVSKSYQNLETVPGT
LSSEDSVEYVQTREQSPSNDVRIIDSYSTKDSISNAGTPNHSLNQPALKV
PVNNYQSLATGTTLSDKHREESAQRFGLVVADSLLQCEMSDWPRLKKKIM
DLFYDYEENKCLS Run BLAST on NCBI transcript from alignment at scaffold_166:99650..101267 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049830 ID=TCONS_00049830|Name=TCONS_00049830|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at scaffold_166:99650..101267 (Clytia hemisphaerica)
CATGTCAGTTGTAGACAatacttttggatgttcttaaatgaAAAGACGTG
TATCAGAGTTNTAACATGTCAGATATAAACAATAGTGTTACCAATAACAT
CACACCAAAAGATGAACACATGATTGTTATAATCGACCCATGTGACGATG
AAGTCACCGATAATCCCGATATGTTCCCCGAAAACGGTGAAGAATCTCGA
AAATTAAATGACGAAGAAAAACGAACTTTAATCAACTTCTATAAAGAAAA
TCCCATACTTTGGGAACGTTTACCGTATCAGAAAAGTAAAACCGAGAAAG
CTGCTTTAAGACAGAAAATGGTTGATTTGTTTGACGGTCAACATACAGCT
GAGGTATTGGAAAGAGCGTTTTTGATTTTACGAACGAGCATGTTACGAGA
AGTGAAACTTTCGAGATCAGGAATAAACCAGTGGCAGCGAAAATGGCGTT
TTTACGACGACATGTTATTTCTGAAGGAcgttttattgaaaggaaagaaa
CGACATTCTGATTTTGAGGAGCAAGATTTATTGAGAATGATCGAGTTTTA
TAGAGAGAATAACATATTGTTAAATCGTAATCCAATCGGAATCGAACTTC
ATGTTGAACTGTTGAATAGACTAGCAACCGATCTTGATGATAGATTCACT
GTACGACAAATTAAATCGCGCTTTGAAGGACTCGTTGATCGGTATAGACA
AGAGAAATTATGGATTAACAAGTTTCAAGGCTATAATCCATCTTGGAGTT
TTTACGAATGTATGTATGAGTTAGATGAACAATGTAATTTCCCAAGTATT
TTAGATGACCCGCCCACCAAAAAACAACGAGTCTCTCAACCGCCTAATAT
AGAGAAATCCCGCCCAGAACATCAGAGAAAGACGCCACAGAACAGTAACA
CGCCCCCGCCTTCAGAAGAATCTACTTCCCATAGCTCAAAGAAGCCTTTC
AGACTAGCAGGTGTCACTTTGGGTGGATCAAAAAAACCAATAACAAACAC
TTTACAAGACAATGAGAACGCCTTAGAACCACCCCATAAAATCGCCGCCT
TGGATGTTACGCCTTCGTTTGTAGTTTCAAAATCATATCAAAATCTAGAA
ACAGTACCTGGTACTTTAAGTTCTGAGGACTCTGTGGAATACGTCCAAAC
TCGAGAACAAAGCCCTTCCAATGATGTGAGAATCATCGATAGCTACAGTA
CTAAAGACTCTATAAGCAATGCTGGAACACCAAATCACAGCCTGAACCAA
CCAGCTTTGAAAGTCCCGGTTAATAATTATCAATCTCTAGCAACTGGAAC
GACCCTAAGTGATAAACACCGGGAGGAGAGTGCACAGCGTTTCGGACTTG
TAGTAGCGGATAGTTTATTACAATGTGAAATGAGTGATTGGCCTcgtttg
aagaagaaaatcatgGATTTGTTTTATGACTATGAAGAGAACAAATGTCT
CTCCTGATGTGTTATAACACTGTTTTTTATAACGAtgaattttaacgttt
ttgattGCTTCTTAGTTTTTATTTGGCGTTGTGTGTATAATATTACCTAT
TACTgcaagttggtctaatgtcgacatccctcatcgaATTCCGACACTTC
TCATTGGGGATTAGAAAA Coding sequence (CDS) from alignment at scaffold_166:99650..101267 >TCONS_00049830 ID=TCONS_00049830|Name=TCONS_00049830|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_166:99650..101267 (Clytia hemisphaerica)
ATGTCAGATATAAACAATAGTGTTACCAATAACATCACACCAAAAGATGA
ACACATGATTGTTATAATCGACCCATGTGACGATGAAGTCACCGATAATC
CCGATATGTTCCCCGAAAACGGTGAAGAATCTCGAAAATTAAATGACGAA
GAAAAACGAACTTTAATCAACTTCTATAAAGAAAATCCCATACTTTGGGA
ACGTTTACCGTATCAGAAAAGTAAAACCGAGAAAGCTGCTTTAAGACAGA
AAATGGTTGATTTGTTTGACGGTCAACATACAGCTGAGGTATTGGAAAGA
GCGTTTTTGATTTTACGAACGAGCATGTTACGAGAAGTGAAACTTTCGAG
ATCAGGAATAAACCAGTGGCAGCGAAAATGGCGTTTTTACGACGACATGT
TATTTCTGAAGGAcgttttattgaaaggaaagaaaCGACATTCTGATTTT
GAGGAGCAAGATTTATTGAGAATGATCGAGTTTTATAGAGAGAATAACAT
ATTGTTAAATCGTAATCCAATCGGAATCGAACTTCATGTTGAACTGTTGA
ATAGACTAGCAACCGATCTTGATGATAGATTCACTGTACGACAAATTAAA
TCGCGCTTTGAAGGACTCGTTGATCGGTATAGACAAGAGAAATTATGGAT
TAACAAGTTTCAAGGCTATAATCCATCTTGGAGTTTTTACGAATGTATGT
ATGAGTTAGATGAACAATGTAATTTCCCAAGTATTTTAGATGACCCGCCC
ACCAAAAAACAACGAGTCTCTCAACCGCCTAATATAGAGAAATCCCGCCC
AGAACATCAGAGAAAGACGCCACAGAACAGTAACACGCCCCCGCCTTCAG
AAGAATCTACTTCCCATAGCTCAAAGAAGCCTTTCAGACTAGCAGGTGTC
ACTTTGGGTGGATCAAAAAAACCAATAACAAACACTTTACAAGACAATGA
GAACGCCTTAGAACCACCCCATAAAATCGCCGCCTTGGATGTTACGCCTT
CGTTTGTAGTTTCAAAATCATATCAAAATCTAGAAACAGTACCTGGTACT
TTAAGTTCTGAGGACTCTGTGGAATACGTCCAAACTCGAGAACAAAGCCC
TTCCAATGATGTGAGAATCATCGATAGCTACAGTACTAAAGACTCTATAA
GCAATGCTGGAACACCAAATCACAGCCTGAACCAACCAGCTTTGAAAGTC
CCGGTTAATAATTATCAATCTCTAGCAACTGGAACGACCCTAAGTGATAA
ACACCGGGAGGAGAGTGCACAGCGTTTCGGACTTGTAGTAGCGGATAGTT
TATTACAATGTGAAATGAGTGATTGGCCTcgtttgaagaagaaaatcatg
GATTTGTTTTATGACTATGAAGAGAACAAATGTCTCTCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049830-exon-scaffold_166-1491911889:99650..101267 | TCONS_00049830-exon-scaffold_166-1491911889:99650..101267 | Clytia hemisphaerica | exon |
| TCONS_00049830-exon-scaffold_166-1510915933:99650..101267 | TCONS_00049830-exon-scaffold_166-1510915933:99650..101267 | Clytia hemisphaerica | exon |
| TCONS_00049830-exon-scaffold_166-1575043694:99650..101267 | TCONS_00049830-exon-scaffold_166-1575043694:99650..101267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:99650..101267 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
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