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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049827 ID=TCONS_00049827|Name=TCONS_00049827|organism=Clytia hemisphaerica|type=transcript|length=1566bp
gtcacctGACATTACAATAGAATTTCAGCGCTTGACCAATCAGAAGCTTC
ACGGGTTTTAGAAAACAATAGCAGTAATATTTTCTGCGATATTCACTTTT
TTTTTGCTTGGAAGAGCTTAAAGCACGACATCTAGCCCTTCGGGCTTTAT
AAATCTATGAGTCCATCACCATGTTTCACAATACCCTACCTACCAGTTTG
GGATTCAAACAAAGTCTTTTGCAGTGCAAGTTTGTGATCGAAAACTTTAC
ACTACCAATCGGCAAAATCCAGAGTCTATAGAACGTGAAAGCTGTGTCTT
TACCAAGACCAACCACAGCTATGGGAGTCACCGAAATCTTTAAGGCTAGA
TTTTATTTaacaatattttaataaattttcgtAACAAAAATATAGTATAA
GCGAAAAGAAAATCATAATTCCTGATCCACTgtcaaataaaattgttaaa
aagttagattttttcaaccaaatccaTAAATACtctatgaaataaaattt
tttcaacttttcaatataaaaaCTCTAAACCAATTCCAAAATGGCCAAAT
CATAAATACTGTACATTTTTAcacgaaataaaaaaacattatggattttt
ccaggaaaaaaccCGAAAACCCCTTGTTAAGGATCTAACCTATTGTCACC
AACCACTACAGTGCCCGTCGAAACCCGGAACAGAAAGAGTCTTGCGAATT
GGGAAGAAATGCTCGAATGGGCAGAGCTGTGGTTCACGAACGGGAAAATC
TTCTAGATTAAGTTTCGTTACGCAGCTTAATTTATCTGCCTTTCAGTCCA
CGGCATGACTTCCCGATCGGGTTTGGGCTCCCCGTATGGGCAGTTCCAAA
GGAAATTTGACAAGTAAACAAGATTGTCCcgggaaaatatattttcgttA
GTGAAGAACCTTAAAAGTTAATATTTCAGGCTATTTTACGGTCAAGTTTC
TTGAATGCTGGATATTTTAATGGACACCCAAATAATtcgggtcaagctgg
agtttttacaagttctttgatgactctgttggtcgttaaatgttgagaca
aacgattttattactttttctaaagaacgcgtcatccctattgtttaaaa
ataaccaatcagttaagcatcttgtaaaaactccaaggcatctcaatAAT
TCACGACTACTCCCGCCCCCCGATGATCTAGATTTTTAGATTGACCTCCT
CAACAATTTTACTGCGGGAAAACCCAACAAAAGACTGCGTATCCACACTG
CAGTACTCATGTGTATACACCTTAACTCTTTATTTTGACATGAAGATTCA
AAGCCAAGTTGCTTACATCACATATGAAAACCATTCATTAAGGCCAGTAA
CAAATCTGTGTTGAATTAGACGGTGAACTTGCAAGAGTGTTCGTTTTTAA
ACACCAACATTCAAGGCCATCATACATAACACCAACATAATTTTCCGCTT
GCTGAATTTTGTCACATAAAACGTAACAATCATGACGTGAATACATATGG
TTTTCTAATACGCCTTGTGAGTTGCTAGTCACGCTAACTGTTATGTTAGA
CCAGTTTCCACAATCT Run BLAST on NCBI transcript from alignment at scaffold_166:85742..87307 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049827 ID=TCONS_00049827|Name=TCONS_00049827|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at scaffold_166:85742..87307 (Clytia hemisphaerica)
AGATTGTGGAAACTGGTCTAACATAACAGTTAGCGTGACTAGCAACTCAC
AAGGCGTATTAGAAAACCATATGTATTCACGTCATGATTGTTACGTTTTA
TGTGACAAAATTCAGCAAGCGGAAAATTATGTTGGTGTTATGTATGATGG
CCTTGAATGTTGGTGTTTAAAAACGAACACTCTTGCAAGTTCACCGTCTA
ATTCAACACAGATTTGTTACTGGCCTTAATGAATGGTTTTCATATGTGAT
GTAAGCAACTTGGCTTTGAATCTTCATGTCAAAATAAAGAGTTAAGGTGT
ATACACATGAGTACTGCAGTGTGGATACGCAGTCTTTTGTTGGGTTTTCC
CGCAGTAAAATTGTTGAGGAGGTCAATCTAAAAATCTAGATCATCGGGGG
GCGGGAGTAGTCGTGAATTattgagatgccttggagtttttacaagatgc
ttaactgattggttatttttaaacaatagggatgacgcgttctttagaaa
aagtaataaaatcgtttgtctcaacatttaacgaccaacagagtcatcaa
agaacttgtaaaaactccagcttgacccgaATTATTTGGGTGTCCATTAA
AATATCCAGCATTCAAGAAACTTGACCGTAAAATAGCCTGAAATATTAAC
TTTTAAGGTTCTTCACTaacgaaaatatattttcccgGGACAATCTTGTT
TACTTGTCAAATTTCCTTTGGAACTGCCCATACGGGGAGCCCAAACCCGA
TCGGGAAGTCATGCCGTGGACTGAAAGGCAGATAAATTAAGCTGCGTAAC
GAAACTTAATCTAGAAGATTTTCCCGTTCGTGAACCACAGCTCTGCCCAT
TCGAGCATTTCTTCCCAATTCGCAAGACTCTTTCTGTTCCGGGTTTCGAC
GGGCACTGTAGTGGTTGGTGACAATAGGTTAGATCCTTAACAAGGGGTTT
TCGggttttttcctggaaaaatccataatgtttttttatttcgtgTAAAA
ATGTACAGTATTTATGATTTGGCCATTTTGGAATTGGTTTAGAGttttta
tattgaaaagttgaaaaaattttatttcatagaGTATTTAtggatttggt
tgaaaaaatctaactttttaacaattttatttgacAGTGGATCAGGAATT
ATGATTTTCTTTTCGCTTATACTATATTTTTGTTacgaaaatttattaaa
atattgttAAATAAAATCTAGCCTTAAAGATTTCGGTGACTCCCATAGCT
GTGGTTGGTCTTGGTAAAGACACAGCTTTCACGTTCTATAGACTCTGGAT
TTTGCCGATTGGTAGTGTAAAGTTTTCGATCACAAACTTGCACTGCAAAA
GACTTTGTTTGAATCCCAAACTGGTAGGTAGGGTATTGTGAAACATGGTG
ATGGACTCATAGATTTATAAAGCCCGAAGGGCTAGATGTCGTGCTTTAAG
CTCTTCCAAGCAAAAAAAAAGTGAATATCGCAGAAAATATTACTGCTATT
GTTTTCTAAAACCCGTGAAGCTTCTGATTGGTCAAGCGCTGAAATTCTAT
TGTAATGTCaggtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049827-exon-scaffold_166-1491911889:85742..87307 | TCONS_00049827-exon-scaffold_166-1491911889:85742..87307 | Clytia hemisphaerica | exon |
| TCONS_00049827-exon-scaffold_166-1510915933:85742..87307 | TCONS_00049827-exon-scaffold_166-1510915933:85742..87307 | Clytia hemisphaerica | exon |
| TCONS_00049827-exon-scaffold_166-1575043694:85742..87307 | TCONS_00049827-exon-scaffold_166-1575043694:85742..87307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:85742..87307 . |
Blast
The following BLAST results are available for this feature:
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