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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049800 ID=TCONS_00049800|Name=TCONS_00049800|organism=Clytia hemisphaerica|type=transcript|length=860bp
gacgggtcagagctgtgagtccaattttggactcaaaaaaattatagtgg
gaaattcgaatttagcgctgtcctcacttactaaaataaaaaccaaattt
cggaacttgcgcttcctttaagaaagtgtgaccagtgaaacaataacagg
atttgattggctgtgttttcaaccgttattaggatatgggaaattcaaac
tgtcagcccataccatgctatatatttcgccatcagtatatagaataaga
aatcatagcatggatctccaggctaattTGAATATTGTATTTCACCGCTT
TTCATTTTAGAAGTATatagtttttaaaaaatatcaaaaaaaaaaattta
tacttCAAAAAACACTCTGTGTTCTTATTGGTTGAGTGGAGCAACACGtg
actgctgactcagcaaaaaaaatcatctttaTCCGCGCGTCTTTGGGAAT
TGATTCacagaattttcaaagaatatggCGGATTTAAGATCTTTTTTACG
GATAGCTACTCTGATAGGTATTTTATCTGCCATTTACACACAAGAAGAAT
GTCAACGAGGCGGTTGTTTCCCGGCTACCGGTGATTTATTGGTGGGCCGT
GAAGACAGGATATCGGCCACCTCAACGTGTGGTTTGAAAGGCCCTGAAGA
ATATTGTATTGTCAGTTTCTTGAACAACAAAAAGAAATGTTTCCGTTGTG
AATCCACCAGGGAGGTTGACCTGACACCAGAAAGCTACAAATATTCTCAC
TTACCTAAATACATGGTGACTACTTCACCCAAAGATCGCTTGAAAGGATG
GTGGCAAGCACAGAATGGTGAACAAGAAGTTCAGATTCAGGTAATATTGT
GACGTCATGA Run BLAST on NCBI protein sequence of TCONS_00049800-protein >TCONS_00049800-protein ID=TCONS_00049800-protein|Name=TCONS_00049800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MADLRSFLRIATLIGILSAIYTQEECQRGGCFPATGDLLVGREDRISATS
TCGLKGPEEYCIVSFLNNKKKCFRCESTREVDLTPESYKYSHLPKYMVTT
SPKDRLKGWWQAQNGEQEVQIQVIL Run BLAST on NCBI transcript from alignment at scaffold_166:50016..52737- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049800 ID=TCONS_00049800|Name=TCONS_00049800|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at scaffold_166:50016..52737- (Clytia hemisphaerica)
GACGGGTCAGAGCTGTGAGTCCAATTTTGGACTCAAAAAAATTATAGTGG
GAAATTCGAATTTAGCGCTGTCCTCACTTACTAAAATAAAAACCAAATTT
CGGAACTTGCGCTTCCTTTAAGAAAGTGTGACCAGTGAAACAATAACAGG
ATTTGATTGGCTGTGTTTTCAACCGTTATTAGGATATGGGAAATTCAAAC
TGTCAGCCCATACCATGCTATATATTTCGCCATCAGTATATAGAATAAGA
AATCATAGCATGGATCTCCAGGCTAATTTGAATATTGTATTTCACCGCTT
TTCATTTTAGAAGTATATAGTTTTTAAAAAATATCAAAAAAAAAAATTTA
TACTTCAAAAAACACTCTGTGTTCTTATTGGTTGAGTGGAGCAACACGTG
ACTGCTGACTCAGCAAAAAAAATCATCTTTATCCGCGCGTCTTTGGGAAT
TGATTCACAGAATTTTCAAAGAATATGGCGGATTTAAGATCTTTTTTACG
GATAGCTACTCTGATAGGTAAGTAAATTTTACTCCCAGCTATCACAGAAC
GTTGTTTTTACGTCCATCTAACGTTATATAGACTTCCCAATTCTACCAGT
CAACGTCTGTTCAAAGAGCGAGTCAACTCAAAAGGACCAATGTACTTCAA
ACAAGTATTTTGACTTATCCTAAGATAACCAATGAAAAAATCTCCTTAAA
TATCGTATTATGAACAGTCTACGACCAAACTTTACAAAAAGATTACAGAA
TCACTCTTGTTAGATTTGATTTAGAATAAAGTGGNCAGTCTACGACCAAA
CTTCACAAAAAGATTACAATATCACTCTTGGTAGATTTGATTTAGAATGA
AGTGAATAAAGTTTTTTGGGAAATGTACAACTGTCAACTCTCTCTAATTC
GAACTTCTACTATTTGAATCTTTCTGTAATTCGAACTTGAATATTGGTCC
CTTCAAGCGGAAAGCAGTTTAAATTACTCTCTTTAAAACCCCTCTCTAAT
TCGAGAAAAAAATGTTTGGTCCCTTGACAATCGAATTACAGAGAGTCAGC
TGTAATTTGAACAATTCGGCCCTACTAAAGTCCATTTGATCTAAGTGTGA
ACACATTTTTTTAATGTAGAAACCACTCTTAATGGAATTAGTCTTGTTTC
GCTGACATGGTTTCTACATGGTAGCTTCAACAAATGGATACTCAAAACGA
ATGTATTTTGATTGATTGTGGGATTGATTGGTATTTGATTTGTGTATTTT
GGGGAATAATGACTTATTTCAAAGTCCATTCTCTTTAAGTGTGAACATAT
ATTTTTCCCATGTAGAAACCACCCTTAATGGAATTAGTCTTATTTCGCTA
ACATGGTTTCCACATGCAAACAAAGAGTGTACACTTAAAATGATTGGATT
TTAATCAATCTTACTTTTTAAGGTATTTTATCTAAAGACAAGACTCAGAA
AAAAGAGTAACTCCCTCAACTCCAAAATTACATTAATTCATTTTAGGTAT
TTTATCTGCCATTTACACACAAGAAGAATGTCAACGAGGCGGTTGTTTCC
CGGCTACCGGTGATTTATTGGTGGGCCGTGAAGACAGGATATCGGCCACC
TCAACGTGTGGTTTGAAAGGCCCTGAAGAATATTGTATTGTCAGTTTCTT
GAACAACAAAAAGAAATGTTTCCGTTGTGAATCCACCAGGGAGGTCAGTA
TCTTGAAGATATTTGAATTTGAAATTCCGCTGACTTAAAGGTTTTGTTTT
TAGATAAAAATGATATCGTTTGCTTACTCATCAATTTTAATTTACAACTT
TTTCACATTGGATTGACACGGATGTGGAACAAGATTGGCCAAAAAGAGGA
AGAGAAAAACCTTTTTTTGCTTATATCAGCACAGCATAACAATAGGCAGA
CACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGGAACACAAAAC
AAAGAATCCTTTCACGTCCCAGAGCTATGCACTTTAAAAAGAATAAAACA
AAAGGGCGCCCCAAAACCAACCTATTTTCTTCAGAATTTCATGTTCTTTC
TAATGGTAGCTATGCCAGTTCCCGGGAATCTCTTAGTTCCGGAGATATAG
CCCTGTGAAGTTAGATCCAGGAGGGCCCGCTATGCGGGTGGCTCGGACTG
AAAGGGTTAATTAAAAGAAAAAATGTGTCTTCCTTTTTGAGCTAATAGTG
AGGTTAAGTAAAATGGTATAATCACGACGACAGACAAAAAATTCACAGGC
TAGTGAGTGTCTACCAATCAAATGTTGTATTTTGAGTAGCCTATTACAAA
TTTCCTGGTATACTTAACCTCAGTAATCTCTCCCGTATGGCAATCTGGAC
AAAGAAATACCTGAGCTTCTACCCCTAAAATAATATCATTTTGCCAAACG
ACATAGACAAAAAGAAAGGGTAAATTGGTTGTATTTATAAACTTAAAAAT
GAAATTGAATCCTAACTTGGTCTGGTAAAAGCCACAAAAGTTTGGAGTCA
CTTTTAATAGTATCAGTTATTTTAAACTCAAATATACGGCCGCTATTTCC
ATAGTAAAATTCTATTACATTCTTAGGTTGACCTGACACCAGAAAGCTAC
AAATATTCTCACTTACCTAAATACATGGTGACTACTTCACCCAAAGATCG
CTTGAAAGGATGGTGGCAAGCACAGAATGGTGAACAAGAAGTTCAGATTC
AGGTAATATTGTGACGTCATGA Coding sequence (CDS) from alignment at scaffold_166:50016..52737- >TCONS_00049800 ID=TCONS_00049800|Name=TCONS_00049800|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_166:50016..52737- (Clytia hemisphaerica)
GTTGACCTGACACCAGAAAGCTACAAATATTCTCACTTACCTAAATACAT
GGTGACTACTTCACCCAAAGATCGCTTGAAAGGATGGTGGCAAGCACAGA
ATGGTGAACAAGAAGTTCAGATTCAGGTAATATTGTGAGTATTTTATCTG
CCATTTACACACAAGAAGAATGTCAACGAGGCGGTTGTTTCCCGGCTACC
GGTGATTTATTGGTGGGCCGTGAAGACAGGATATCGGCCACCTCAACGTG
TGGTTTGAAAGGCCCTGAAGAATATTGTATTGTCAGTTTCTTGAACAACA
AAAAGAAATGTTTCCGTTGTGAATCCACCAGGGAGATGGCGGATTTAAGA
TCTTTTTTACGGATAGCTACTCTGATAGGTTGACCTGACACCAGAAAGCT
ACAAATATTCTCACTTACCTAAATACATGGTGACTACTTCACCCAAAGAT
CGCTTGAAAGGATGGTGGCAAGCACAGAATGGTGAACAAGAAGTTCAGAT
TCAGGTAATATTGTGAGTATTTTATCTGCCATTTACACACAAGAAGAATG
TCAACGAGGCGGTTGTTTCCCGGCTACCGGTGATTTATTGGTGGGCCGTG
AAGACAGGATATCGGCCACCTCAACGTGTGGTTTGAAAGGCCCTGAAGAA
TATTGTATTGTCAGTTTCTTGAACAACAAAAAGAAATGTTTCCGTTGTGA
ATCCACCAGGGAGATGGCGGATTTAAGATCTTTTTTACGGATAGCTACTC
TGATAGGTTGACCTGACACCAGAAAGCTACAAATATTCTCACTTACCTAA
ATACATGGTGACTACTTCACCCAAAGATCGCTTGAAAGGATGGTGGCAAG
CACAGAATGGTGAACAAGAAGTTCAGATTCAGGTAATATTGTGAGTATTT
TATCTGCCATTTACACACAAGAAGAATGTCAACGAGGCGGTTGTTTCCCG
GCTACCGGTGATTTATTGGTGGGCCGTGAAGACAGGATATCGGCCACCTC
AACGTGTGGTTTGAAAGGCCCTGAAGAATATTGTATTGTCAGTTTCTTGA
ACAACAAAAAGAAATGTTTCCGTTGTGAATCCACCAGGGAGATGGCGGAT
TTAAGATCTTTTTTACGGATAGCTACTCTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049800-exon-scaffold_166-1575043694:52221..52737 | TCONS_00049800-exon-scaffold_166-1575043694:52221..52737 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1575043694:51045..51241 | TCONS_00049800-exon-scaffold_166-1575043694:51045..51241 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1575043694:50016..50161 | TCONS_00049800-exon-scaffold_166-1575043694:50016..50161 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1510915933:52221..52737 | TCONS_00049800-exon-scaffold_166-1510915933:52221..52737 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1510915933:51045..51241 | TCONS_00049800-exon-scaffold_166-1510915933:51045..51241 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1510915933:50016..50161 | TCONS_00049800-exon-scaffold_166-1510915933:50016..50161 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1491911889:52221..52737 | TCONS_00049800-exon-scaffold_166-1491911889:52221..52737 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1491911889:51045..51241 | TCONS_00049800-exon-scaffold_166-1491911889:51045..51241 | Clytia hemisphaerica | exon |
| TCONS_00049800-exon-scaffold_166-1491911889:50016..50161 | TCONS_00049800-exon-scaffold_166-1491911889:50016..50161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:50016..52737 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008211 | Laminin_N |
Blast
BLAST of TCONS_00049800 vs. Swiss-Prot (Human)
Match: LAMB2 (Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.595e-25 Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 550 CQRGGCFPATGDLLVGREDRISATSTCGLKGPEEYCIVSFLNNKKKCFRCESTREVDLTPESYKYSHLPKYMVTTSPKDRLKGWWQAQNGEQEVQIQVIL 849
C RG C+PATGDLLVGR DR++A+STCGL GP+ YCIVS L ++KKCF C+S R + +SH + +VT+ R WWQ++NG V IQ+ L
Sbjct: 42 CSRGSCYPATGDLLVGRADRLTASSTCGLNGPQPYCIVSHLQDEKKCFLCDSRRP--FSARDNPHSHRIQNVVTSFAPQRRAAWWQSENGIPAVTIQLDL 139
The following BLAST results are available for this feature:
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