TCONS_00049797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049797
Unique NameTCONS_00049797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049797 ID=TCONS_00049797|Name=TCONS_00049797|organism=Clytia hemisphaerica|type=transcript|length=2697bp
tttagttaaAATAGTCcctatttcaaacaaaaatgataaatcagcaaaat
aaaatgattacATAACTGGTGTATATTGATTGTGAATTTACTATCATCAT
CATGTCTGGAGACGATCAAAAGTTGATGTCAGACCCAAAATACAAGCAAT
TTATTCAACAGATTGATAAAGcattgaaaatctttgaatctTCAAGTGAA
TGGGCTGATCTTATTTCATGTCTTGGGAAATTGTCAAAGGTTATACAAAC
GTACAGTCAATTCTCAGTGTTACCAAGGAAGTTATTGATTGGTAAACGTT
TAGCACAATGTTTACATCCAGCTTTACCAAGTGGTGTCCACCTCAAAGCA
TTGGAATGTTATAATTTGATCCTGACCCAAATTGGTACAGGGAGATTAGC
ACAAGATCTTTTCATATACTCTGTTGGTCTATTTCCACTGTTAAGTCAAG
CCTCTATAGCTGTCCGTCCAATCTTGTTGAATTTGTACGAGACACATTTC
CTGCCTTTGAAGAAAAAGTTGTACCCAGGACTATCTGGGTTCTTAGTGGC
TTTATTACCTGGCATCGAAGAAGGATCAGAATTTACGGAAAGGACTACCA
GTATCTTACAGAAACTATGTGACAGTATTTCAGAAGAGATCTTCTTCACC
TGTTTATGGGACACCGTCTTACATTCTTCAATGACGAGATTGTCAGCTCT
CCTATTTGCCATTGGTTACATTGCTAAGAAACCGGgtcaatttaaaaatt
caatcgTTGGCAAAGAAGTCTCTCTTATGgTGAATGCATTATGTGCATCG
TTGGACGATTCGAACGTTCTTGTACAACGTATCACACTCGATTTCGTCAT
TTCTTTCTTCCATTTCCATTCGTCGGTGTTGTCGGAAAAACACGTCGTCA
AACTTCTGACGTACGCTTTAGGCGTTCTCCTCAGGAGAGATATGTCACTC
AATCGACGTATCTTTCAATGGTTTTTGAACGTGAACAGCGATGGAAATCC
GATCCATAAGATGGAGACAACAGATGATGAATCTGAGAGTGATACCAGTG
GTAGTCGTGAAGAAAAATCCTATTTCGATTTATACGTGCATGAACCACTA
ACCATAGCTATTATCAtcctttttcaaaacattttggaaTCTTTGGAAGG
AGCCTTTGAAGCGGATAGTCTAACGTCGAAACACAGACAAACACATTTGA
AACCGTTCCGCATTTTAATCACTTTGCTAGATAAACCTGAAGTCGGGTCA
gccattttgaatgaaatcatGTTAGAAATTTTCCGTACTTTATACAAACA
TTCACAAGTTAGAAGCAAGTTGGTTGATATTAGTATACGAATCGGTAAAG
ATGTCAACTCTATGCATAATGAACTTATAAAAAATGCTAACCTCTTATTC
AGCTCTTTAGAATCTTACTATATTTGGGAGTATTTAAGTAAAGTTCTGAG
ACGTTGTGTTATTGTTGACAAAGATGCTGAACATAACAAGACTTTGAAAG
CGTGTACCAATGGTTTTTCATCACTGATTGATATTAAATTACCGACACAT
TTGGAGACTTTTCAGATCATCTCGTATTTATTGGATGTTGTATCGTTGGA
AACTTCATTAGAAACGCAATCAGAACACTGGCCCAATTTACTGCGAACTG
TCATCAAAGAACTGATTAAGAATTCGTCCAAACTTGATCTCAAAACAATG
AGTGAAGGGATCTCATTGGTCTCGAAACTCTTCTCAAGACTTTCACCTAT
ATTCAATCAACCGGAAATGCCGACATTCACCAGTACCGTTCTACAGCAAT
CACCTTCCAAAGATGGCTCTCTATCTCCAACATTGGATACTTCAGCTACC
AGTTTCTTCGAGAAAGGCGGTATTAGTAGTTGTACTGACTTGTCTAAAAC
ATTGTTTTGTCAATTTGTGAaagaaacaattttcaaaaacaacttGAACG
CGCGTCTGTTGTTGGAAGACAGCGCTGGTGAATTAGATTTCAACACGTTG
ATTAATCAATCCAGCTCTAACAATGAGGTTGAGGAGAAGGGACTGGGATC
GAAAGTAGCAGAaacctttcaagtgttttgtcAGTATCTGGTCAAAGTAT
CGTGTTTCCCGTTATCGTCGACACCACTCCAAGGTTGATATTCTATGCAA
CAATAGCCGAAATACTGATGAACGTTTCAAGTCTCCCGAAAAGTTTATTG
ATCGCTTTCCCAGAAAATCTACCATGCGCCTACCTGATAGCAGATGCCAT
GTTCTCTTTGTTCTCTTCGTACGGTACGCGATGCATGACGTGTGTTCTAG
TTGTCGACCGATACATGCGTATAAAGCATCTACAGGAATACCACGTCAAA
TTCAGTACGTTTTGGTATCGGGTGACGGTAGGAAGTTACTTAACGTCTGT
GTTTTGTGTAAGTTTATGTCACTTTTTGTCGAATATGTTCAATCAACTGC
AATGGATCCCAAGGCTAATTACACCGTTAAACGTTATCGCTGTGATCATC
TTTCTAACTTTGTACACCAAATTTACATCAAACTAAAACAGCACGTGGAA
GCAAGCCGTAATCTATCTACCACAAACCAAGAtctcaccaaaatcaccaa
attcTACTTGATCTTATACCTGATCAGTAATCTTCTGATCATGTGCATTT
CTTTTGCAAGCAGTCTTACCAAATCTCAAAATGAAAAACCAATGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_166:652735..661264+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049797 ID=TCONS_00049797|Name=TCONS_00049797|organism=Clytia hemisphaerica|type=transcript|length=8530bp|location=Sequence derived from alignment at scaffold_166:652735..661264+ (Clytia hemisphaerica)
tttagttaaAATAGTCcctatttcaaacaaaaatgataaatcagcaaaat
aaaatgattacATAACTGGTGTATATTGATTGTGAATTTACTATCATCAT
CATGTCTGGAGACGATCAAAAGTTGATGTCAGACCCAAAATACAAGCAAT
TTATTCAACAGATTGATAAAGcattgaaaatctttgaatctTCAAGTGAA
TGGGCTGATCTTATTTCATGTCTTGGGAAATTGTCAAAGGTATGTTGAAA
AAGGAGGTCTTCGTCTGTtatattttttgtgaaagatgTTGTGAAAAGAG
GAACTTTGATATTGCAACACACTTGATTTTGTTTGGGTTCTCCAGAAATG
CTATAGGTGCACTTTGTCTTTGTggccccggcgagccattttgagtgagg
gggccaacattttTGAGATGACCAtgaccatggttgggcgacgaagaaaa
tttttcactatttacaccctcaaaacatcTTAAAACGATATATatttggg
gagaataatagtttttgtggtttgatttggtctcaaaccagcttaaaata
gtaactcttaaaaacgtatgacatggtCTTCCAAAAAGTGGGGGGCCATG
GACCCCCAGCCCCCCTGTTGACGGGGCCCATGACATGCTCTTTCAAAAAT
ACATAGAAACTTATAATAAAAGTATTAAATCTTCCTGCTTCTCATTTTCA
GCCAAAGACTCCAAAAAAGCTATATAGTAAAAAGAGACTTTGCCAGAAAT
ACAGTAAATAATTCGACGATTAAGTTTTTATTCATTCTGTCTTTGCATTT
TCAGGTTATACAAACGTACAGTCAATTCTCAGTGTTACCAAGGAAGTTAT
TGATTGGTAAACGTTTAGCACAATGTTTACATCCAGCTTTACCAAGTGGT
GTCCACCTCAAAGCATTGGAATGTTATAATTTGATCCTGACCCAAATTGG
TACAGGGAGATTAGCACAAGATCTTTTCATATACTCTGTTGGTCTATTTC
CACTGTTAAGTCAAGCCTCTATAGCTGTCCGTCCAATCTTGTTGAATTTG
TACGAGACACATTTCCTGCCTTTGAAGAAAAAGTTGTACCCAGGACTATC
TGGGTTCTTAGTGGCTTTATTACCTGGCATCGAAGAAGGATCAGAATTTA
CGGAAAGGTAAGTACTTTATTTCTTccgtttttatgaaatttaagTTAAA
TCCTACCAGACCCTGAAAAGTCAGAACTTTAGACCTGAACTTGCGAAAAT
TGTCAAGCAGACTCTTCTCTTCCTAGTCTTGCCAAATATAAACTTTTCTA
TAATGTTTTTTCTGAATCgacttctttattttatttttaacagGACTACC
AGTATCTTACAGAAACTATGTGACAGTATTTCAGAAGAGATCTTCTTCAC
CTGTTTATGGGACACCGTCTTACATTCTTCAATGACGAGATTGTCAGCTC
TCCTATTTGCCATTGGTTACATTGCTAAGAAACCGGgtcaatttaaaaat
tcaatcgTTGGCAAAGAAGTCTCTCTTATGGTAAAGATGTTTATATTTTA
TAGCAGACAGCGCTCGACCTGCTGGCTATTTTATGGGCAAAACTTTGGAC
TTCATTCTCAATATTTCTCTGATGAATGAAtgctttaaaaaataaagaaa
atttttcatttttatatctaATGTGATTCGACCATCAAATAAAATTAGCT
GCAAATgctatttaattttatttttgtttttgagccGCTGCTAGTTGCAT
AGCTGTGAACTCAAAATTTACTAATAACCTTTCCCTTTCCTAGCATacaa
ttttttatcactttGTTGAGCTATATCGAGAAAAAGCTATGATCATCTTG
TACAAGCAAGAGCCTTACCAGATCCTTTGGTGTTCCAATAGTCCTGGATT
gtaaatagaaataaaaagaaaaaattggttGGTTAGAACCTTTGCACACT
GGTTCTGTATTGGTCCTAGAACTATAATCCAATTAATTTTTAGAGGACTT
TTGTTTTCGGATAGCCTATAATTTTTGTGCATCTTGTAATTTCTACGAta
tatttttagtgtttttgataaaaaatagagGTAAAGAGAGGAGGAAAATT
tacatgaaatcaaaattttaattcccTTATAGTCTGTATTTTAGCTAGAT
CTTATAAATCAATAAGCAAAATTCTAATCCTAGTGCTCCATTTAAAAAAT
GGGGTCTCCATTCCGGTTGATTATACCTCTTGAATATAAAATCTAGCTAA
AATACAGACTATAAAGGAGAAAAGCTTTTGATTTCATGTAAATTTTCCTC
CCCTCTTTACCtatgttttttatcaaaaacactaAGATTAAAAATTCGCA
CATCTTTAATTTTCGCACAGCCGGCACGCGTGAAAATTAGTATTCATGAT
TTTAACTTAATGAATCCTCTCTCCACAGTATCGAGCTTTCTCTCAAAAAT
GATTATCCAAATACATAAATATAAtgaatgtttaaaatttctatttttca
ggTGAATGCATTATGTGCATCGTTGGACGATTCGAACGTTCTTGTACAAC
GTATCACACTCGATTTCGTCATTTCTTTCTTCCATTTCCATTCGTCGGTG
TTGTCGGAAAAACACGTCGTCAAACTTCTGACGTACGCTTTAGGCGTTCT
CCTCAGGAGAGATATGTCACTCAATCGACGTATCTTTCAATGGTTTTTGA
ACGTGAACAGCGATGGAAATCCGATCCATAAGATGGAGACAACAGATGAT
GAATCTGAGAGTGATACCAGTGGTAGTCGTGAAGAAAAATCCTATTTCGA
TTTATACGTGCATGAACCACTAACCATAGCTATTATCAtcctttttcaaa
acattttggaaTCTTTGGAAGGAGCCTTTGAAGCGGATAGTCTAACGTCG
AAACACAGACAAACACATTTGAAACCGTTCCGCATTTTAATCACTTTGCT
AGATAAACCTGAAGTCGGGTCAgccattttgaatgaaatcatGTTAGAAA
TTTTCCGTACTTTATACAAACATTCACAAGTTAGAAGCAAGTTGGTTGAT
ATTAGTATACGAATCGGTAAAGATGTCAACTCTATGCATAATGAACTTAT
AAAAAATGCTAACCTCTTATTCAGCTCTTTAGAATCTTACTATATTTGGG
AGTATTTAAGTAAAGTTCTGAGACGTTGTGTTATTGTTGACAAAGATGCT
GAACATAACAAGACTTTGAAAGCGTGTACCAATGGTTTTTCATCACTGAT
TGATATTAAATTACCGACACATTTGGAGACTTTTCAGATCATCTCGTATT
TATTGGATGTTGTATCGTTGGTAAGTCCCTTTCCATTCCTTTTTTCGGCT
TACATTGAATATATCGCGTACCATTTTTATaatagtgcagtggtagagca
tcctgctacggtgcgcaaggttgtgggttcaacccccagccaggTCATAC
CAAAGGTTTCCAAAatgactttttgataaataacgagattgctcacggga
attttttgaccTGCATTCTGCGCGATCGTGTTTAATCGCCCACGCGTGTA
CGCTCTGTGAATTCTGTCTGCTGTGTACGGGTACTGTATACTAGAAAAAG
CTCCTCTGCTCTCTTCATTCTTTTGAGAATTCAAGGAGATTGGAGAGTGT
CCTAACCCCCCAGATGGAAATTCTATTTTAAAGGCACTAGCAGGGTTTAC
AACCCCTTTGCTGCAGTCCCACTAAAGATTAAAGAGTCCTGAAAATCTCG
ATGAGTTATCGGCTGCCGCATGTTGGAAATGATCTAAAATCACTTGTTTa
agaatttaaataaaattatacaggCCATGGCAAataaagagataatattg
tTAATCATTGTTCGATAATACCAACATCTTGAGTGGCCGAGTGGGTAAGG
CGTTGATCTGTCAAATATACGTGAAAGTCATTTTtgagagttcgaatcct
atacggtgcgttgaagtttgtgttattttgtcagcattgaccaacctttt
tctggttttatgagcttatgagctcttattgatatttttggaaattcccg
ttatatttttgagaaacaaaaattttataagtAGTGTCACCTCAGTGCAG
CTTGACgcaagtacagtatttcaaaatggaacAGGTTAGTTAGTGGGTGG
AAAGTCAAGAGTTatgactttcccttctctttaaaatccagtattccaaa
attttgaactaaaaaaaatgcgtaaaaatcgactttcgtctttttttatt
atcttgcaaacacttttttcaaaaccacaagtgaaaagaaaagcatgATT
GGcaggtctaaaaaatgattgacaggtgcgggtttgctcgcgcgggttag
aaattcccgtgagcaatctcgttatttatcagcatgtccaaaatggtact
tgatgtccttctgcttgatgctcagcaattaagagaaggatcaagggtaa
gtggagccatacagggagaaagagtggcgccccgggtagatagctatcgg
aagaggagccttcgggtcgcctccgacctgaattgaatttttaaatctGT
TACGGTGAATATGGAGACATAATTAAATTTACAATCTAAGAGAGGCGTTC
AAAGTTGttttaagaaaatctttaatattttttataagaaccagcaaATT
TTGGCTAAGGCTTGGttctttacttttctttcgTGATTTTTCAGTCTTAA
ACGTTttttagattgtcctttatctACTTGGGGAAACGATACAATACTTT
TCTTATAGTCATTTCTGAAATCTGGGGCCGTCgggatttttcaatttatt
ccaTAATTTACTCTATCATGTTTATAGTTAAAGCAGTCATTTTATTATCA
GTCTACAAGTCTTTTCCCGTCTGAGCAAGGTACAAAAAGGGGGTTTCCAT
CtcgaatttcatcaaaattctgcaaaaatctttataaaaaaatctcgACA
AATTTGTTTAGTAAAATCAAATGCCCGtctgaaacaaaaaaactttgctT
TGACCAATGTAATCATAAttcgttcgatttttttctccatAGGAAACTTC
ATTAGAAACGCAATCAGAACACTGGCCCAATTTACTGCGAACTGTCATCA
AAGAACTGATTAAGAATTCGTCCAAACTTGATCTCAAAACAATGAGTGAA
GGGATCTCATTGGTCTCGAAACTCTTCTCAAGACTTTCACCTATATTCAA
TCAACCGGAAATGCCGACATTCACCAGTACCGTTCTACAGCAATCACCTT
CCAAAGATGGCTCTCTATCTCCAACATTGGATACTTCAGCTACCAGTTTC
TTCGAGAAAGGCGGTATTAGTAGTTGTACTGACTTGTCTAAAACATTGTT
TTGTCAATTTGTGAaagaaacaattttcaaaaacaacttGAACGCGCGTC
TGTTGTTGGAAGACAGCGCTGGTGAATTAGATTTCAACACGTTGATTAAT
CAATCCAGCTCTAACAATGAGGTTGAGGAGAAGGGACTGGGATCGAAAGT
AGCAGAaacctttcaagtgttttgtcAGTATCTGGTCAAAGTATCGTGTT
TCCCGTTATCGTCGACACCACTCCAAGGTTTGtgcatttttattaaattt
cttatattgTCGTTTTTCACTTAAAACTGCTTGTTATATCTGTCGAAGAA
ttaaaagggataatcagattgGTTGAGATCTTTTACATGCAGGTTTTTTC
CGTGGTCTTGAGCTAAACCTGctattatttttagtttaatgctttTTCAA
AGTTGAGATGGGacaaaaatctctaaaaattggtTTTCACAGACAATGTT
GACAAAAcagaatgaagatgaaaaacgaaaaaatgaaaatttccaacTTA
CTTCACCCCTCAGGACGCTATATTTACCTGAAAGAGAAAAATTAATGACT
ATAAAAAGGTTCTTTTAATGCTTTATTAATTAATATACTTTGAGCTTTTG
TCTTTGAACTGAATATTAGAGGGCAACCCCTAGGGGACTCTTGCAACTTT
CTTGGAACGCAACCTTTGTGGTTAGTCATATGTGATAGGATTTGGACAGA
TTTTCGAGCTTTAAGTGGCCGATCTGTAATGTCTAATGAGGTGCTTTTTG
TGCCAGAAATGTATTTTTTCGATTCTTTGTTTGACTAGAGCTGAAGTCCT
CTGGGGGACTTTATTACTTGAGCATGTCATTTCACCATTTTTAGACACCA
AGCTAAGACACTTTTTAAAAGTCGTTCCAACGAGAAATAAAGCCTTTCTA
CTGAATAAACGCGAAGTCTAACATTATTTTGTGCTTAAAACTTCGGTGGT
GCAAAAGGCGTAACAGCAAGTTTAGGAacgttaaagggataatcagatgg
tttgagatatttggcctgTAGTAACCTTCTACAGTCCTAAGTAAAACCTC
CAAGTATTTTGGCCTAACTATTTTCTTAAGTCGTGAtatcacaatttttg
aaatttatactGAAAGTGGGCTCGTACACGGTTCTTTTGTTGTAATTCTT
ACTAAGTAAAGAACCTTGTAACTAATTTATCTCGACTTTAGGAAGATagt
ttaggcaaaaatattttgaggttttactcGGGACCGTACAAGGTTACTAC
AGGCCAAATATAGTAAACCATCgatgattatccctttaaaaagaagaaat
aaagtcTTCCCATTGGTTGATTCTGGGACGAacgtcatttccatcaaaaa
acAATTAGCCCTTATTGATGGTGCGAAAGGTGTAACACATTTTACAATCA
AAGTTGAAAACCCTGTCAttaaataatataataatatataaCCTGATACG
AACTCTTTTATGAgggtacactctttttttataagaacaataaggctcaa
aaatgccaaaataaaaaaaaagtgtaaaaacacGGGTGAGCCTGGAATAG
AAGAATATTATGCAAATAGAGGTTCAATTACTTAAAACAAGGTACCAAAC
TTGAAATAGTTTCgacctaaaaataagaacataaaaaaagaaaataattt
taaatgccagaaaaaataagaacagtcgagcATTTATGAaagaatttact
ggttcttattatAAAAAACTGTAATAAAGTATAATTATAACTGTTCCATC
AAATTCAAACAGAATAACAGATGAAAGacttttattaaattcggtATAAA
AATGAATATAAAAGTAATGTTTTTTAGGACTTTTCAAACAGAAACAAAAC
GGTCTAGCAAATAGAATATAGCGTTAGCAacaaaaatgaggttttcttAA
GCTTCAGNTGTAATAAAGTATAATTATAACTGTTCCATCAAATTCAAACA
GAATAACGGATGAAAGACGTTTATTAAATTCGGTATAAAAATGAATATAA
AAGTAATGTTTTTTAGGACTTTTCAAACAGAAACAAAACGGTCTAGCAAA
TAGAATATAGCGTTAGCAacaaaaatgaggttttcttAAGCTTCAGAAAA
GATGACGGTTGCATCACAACAAAACTATACGGCTGACTTTTTAACAAGCA
CTAATAATTTCGCATTAAACTTTTGCACGGCCCGAAAACAGCGGTTTGTT
GATATAAGTCACCTAGGACGAGTGATAGGATTATCTTTGATTATCACGCT
TGCAGTACTTGGGATAATGGTCAATATTTCTCTTAATATTCTTCTTTACA
TCACCAATCAATTGGAAAATCGTTCATTTAGGTAAGTTtcctgatttttc
tatttttttttagggTTTAAACTTTCAGCGATAGAGTTGGAACACCACCT
AGGTAAATAGGTACAACGCAAAAGGTGACCTTGCTACAAAGTAAAATTAG
TTGGGGATCCGGCCCACAGCGTCCCGGTAAGGAGCTAACCGTGGTTTCAC
CCGATCAACTCGCACAATATTTTAAAGAGATTTTATAAGACCTTTTTCGC
TCTTATGATTTATTTTATCCGGTAGGGGTTAACTATGAATATAGTGTGTT
ATTGATTAAATTTCAGGTTGATATTCTATGCAACAATAGCCGAAATACTG
ATGAACGTTTCAAGTCTCCCGAAAAGTTTATTGATCGCTTTCCCAGAAAA
TCTACCATGCGCCTACCTGATAGCAGATGCCATGTTCTCTTTGTTCTCTT
CGTACGGTACGCGATGCATGACGTGTGTTCTAGTTGTCGACCGATACATG
CGTATAAAGCATCTACAGGAATACCACGTCAAATTCAGTACGTTTTGGTA
TCGGGTGACGGTAGGAAGTTACTTAACGTCTGTGTTTTGTGTAAGTTTAT
GTCACTTTTTGTCGAATATGTTCAATCAACTGCAATGGATCCCAAGGCTA
ATTACACCGTTAAACGTTATCGCTGTGATCATCTTTCTAACTTTGTACAC
CAAATTTACATCAAACTAAAACAGCACGTGGAAGCAAGCCGTAATCTATC
TACCACAAACCAAGAtctcaccaaaatcaccaaattcTACTTGATCTTAT
ACCTGATCAGTAATCTTCTGATCATGTGCATTTCTTTTGCAAGCAGTCTT
ACCAAATCTCAAAATGAAAAACCAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031567XLOC_031567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049797-exon-scaffold_166-1491911889:652735..652973TCONS_00049797-exon-scaffold_166-1491911889:652735..652973Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:652735..652973TCONS_00049797-exon-scaffold_166-1510915933:652735..652973Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:652735..652973TCONS_00049797-exon-scaffold_166-1575043694:652735..652973Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1491911889:653539..653891TCONS_00049797-exon-scaffold_166-1491911889:653539..653891Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:653539..653891TCONS_00049797-exon-scaffold_166-1510915933:653539..653891Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:653539..653891TCONS_00049797-exon-scaffold_166-1575043694:653539..653891Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1491911889:654078..654264TCONS_00049797-exon-scaffold_166-1491911889:654078..654264Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:654078..654264TCONS_00049797-exon-scaffold_166-1510915933:654078..654264Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:654078..654264TCONS_00049797-exon-scaffold_166-1575043694:654078..654264Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1491911889:655236..656054TCONS_00049797-exon-scaffold_166-1491911889:655236..656054Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:655236..656054TCONS_00049797-exon-scaffold_166-1510915933:655236..656054Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:655236..656054TCONS_00049797-exon-scaffold_166-1575043694:655236..656054Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1491911889:657777..658311TCONS_00049797-exon-scaffold_166-1491911889:657777..658311Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:657777..658311TCONS_00049797-exon-scaffold_166-1510915933:657777..658311Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:657777..658311TCONS_00049797-exon-scaffold_166-1575043694:657777..658311Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1491911889:660701..661264TCONS_00049797-exon-scaffold_166-1491911889:660701..661264Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1510915933:660701..661264TCONS_00049797-exon-scaffold_166-1510915933:660701..661264Clytia hemisphaericaexon
TCONS_00049797-exon-scaffold_166-1575043694:660701..661264TCONS_00049797-exon-scaffold_166-1575043694:660701..661264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:652735..661264 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215032	0.166444	0.427387	0.452248	2.42778	2.00688	2.15588	1.70102	0.620794	0.999372	0.670225	0.600306	0.298769	0.120536	0.189868	0.208446	0.51741	0.364859	0.229656	0.289603	0.282816	0.419097	0.175453	0.499692	0.138843	0.555494	0.343772	0.20779	0.529707	0.324183
Blast
[Close]
BLAST of TCONS_00049797 vs. Swiss-Prot (Human)
Match: DOP1 (Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=2 SV=1)

HSP 1 Score: 409.068 bits (1050), Expect = 3.284e-121
Identity = 256/654 (39.14%), Postives = 376/654 (57.49%), Query Frame = 3 
Query:  102 MSGDDQKLMSDPKYKQFIQQIDKALKIFESSSEWADLISCLGKLSKVIQTYSQFSVLPRKLLIGKRLAQCLHPALPSGVHLKALECYNLILTQIGTGRLAQDLFIYSVGLFPLLSQASIAVRPILLNLYETHFLPLKKKLYPGLSGFLVALLPGIEEGSEFTERTTSILQKLCDSISEEIFFTCLWDTVLHSSMTRLSALLFAIGYIAKK-PGQFKNSIVGKEVSLMVNALCASLDDSNVLVQRITLDFVIXXXXXXXXVLSEKHVVKLLTYALGVLLRRDMSLNRRIFQWFLNVNSDGNPIHKMXXXXXXXXXXXXGSREEKS--YFDLYVHEPLTIAIIILFQNILESLEGAFEADSLTSKHRQTHLKPFRILITLLDKPEVGSAILNEIMLEIFRTLYK-----------------HSQVRSKLVDISIRIGKDVNSMHNELIKNANLLFSSLESYYIWEYLSKVLRRCV---------IVDKDAEHNKTLKACTNGFSSLIDIKLPTHLETFQIISYLLDVVSL----------ETSLETQSEHWPNLLRTVIKELIKNSSKLDLKTMSEGISLVSKLFSRLSPIFNQPEMPTFTSTVLQ----QSPS----KDGSLSPTLDTSATSFFEKGGISSCTDLSKTLFCQFVK 1922
            M+ ++ +L+SD KY+ ++  IDKALK FE SSEWADLIS LGKL+KV+Q  +++ V+P+KL IGKRLAQCLHPALP GVH KALE Y +I   IG  RLA+DLF+YS GLFPLL+ A+++V+P LL+LYE ++LPL K L PGL G L  +LPG+EEGSE+ ERT  +L+K+  ++ +  F++ LW ++L S   RL  + + + ++ +K   + +  I+G ++ LMV A+  S+ DS+VLVQR TLD ++  F FH S  +   ++++L+ AL V+LRRDMSLNRR++ W L  +++G  I           S    + EE +  YF  +  E L  A++ + Q     + G  E ++L        LKPFRILI+LLDKPE+G  IL ++++E+FRTLY                  H+Q+ SKL +         N    ELIK ANLLF+S E YY+W+Y+++    C          I   D+  +  L+  TN F  L+D              +LLD+VSL          ET +E Q+EH P LL  +I  L  +   L L  +++ + L SK+ S++ P    P +   T  VLQ    Q+ S    +D  +S     + T  FE G     +  S++ F +F++
Sbjct:    1 MNTEELELLSDSKYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLHPALPGGVHRKALETYEIIFKIIGPKRLAKDLFLYSSGLFPLLANAAMSVKPTLLSLYEIYYLPLGKTLKPGLQGLLTGILPGLEEGSEYYERTNMLLEKVAAAVDQSAFYSALWGSLLTSPAVRLPGITYVLAHLNRKLSMEDQLYIIGSDIELMVEAVSTSVQDSSVLVQRSTLDLILFCFPFHMSQATRPDMIRILSAALHVVLRRDMSLNRRLYAWLLGFDNNGAIIGP--------RSTRHSNPEEHATYYFTTFSKELLVQAMVGILQ-----VNGFGEENTLMQD-----LKPFRILISLLDKPELGPVILEDVLIEVFRTLYSQCKAELDLQTEPPFSKDHAQLSSKLRE---------NKKTAELIKTANLLFNSFEPYYMWDYVARWFEECCRRTLHVRLQIGPGDSNDSSELQ-LTN-FCLLVD--------------FLLDIVSLPTRSMRVLCQETYIEIQTEHLPQLLLRMISALTSHLQTLHLSELTDSLRLCSKILSKVQP----PLLSASTGGVLQFPSGQNNSVKEWEDKKVSSVSHENPTEVFEDGENPPSSRSSESGFTEFIQ 607
The following BLAST results are available for this feature:
BLAST of TCONS_00049797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DOP13.284e-12139.14Protein dopey-1 OS=Homo sapiens GN=DOPEY1 PE=2 SV=... [more]
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