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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049795 ID=TCONS_00049795|Name=TCONS_00049795|organism=Clytia hemisphaerica|type=transcript|length=1056bp
AAACATGAGACGATTGAGTTTAGAAATGTGTTATCACCAATTAATCTGAA
ACAAACGAGACCCATCAACACATCATTGACCACTTCAAACCTTACATCAT
CACGTATCATTCCTTCAAATAATTGAGCTTGTTGAATTTGACGTCGTATA
TTTTCTTGAAGACCTTTGACTCCATACGATTTAAGCACCATCCAAAGTTT
TAAAGATCGAAAACGTCGTCCAAGAGGGATTTGCCAGTGCCTGAAGTCAG
GGATTTCCTGTTCATAATCATGTTTCAAATACAGTGGATTGATATCAAAC
AGATTAATCAAATCCAGTGAATCCCGAACAAACATGGCCGCACATGGGAA
ATTCACCATCAGCCACTTATTACAGCTAACAACAAGAGAATCGGTATTTT
CAATTCCCTTCATAAGATATCGATACTCCGGACAAATCATCGCCGCTCCT
GCATATGCAGCGTCAACATGCATCCACAGTCCTTCCTCCCCTGAAACAGC
ACTTATCTCATCGAGTGCGTCAAACGCGCAAACGTTGGTTGTACCGGCGG
ACGCACACACAAAGAAAGGAATCAAACCCTTAGCTTTATCTTCCTCGATT
GCTCTTTTCAGCTCATCCCCTCGCAGCCTAAATCTCTCATCTGTTTCAAG
TAATCTTAATTTTGTTCCAGCTAATCGCACATCTTTTTCAACTGACGAAT
GAGATTGTTTTGAGGTGTACGCTATTAGTTTAGATCCGAAATCTTCGTCG
TGACCATATTGACTCAACTTGCGATGTTTTGCTGCTAATATTGCAACCAA
TGTTGACTCACTTGCGGATCCTTGAATAACCCCACCACCATGTCCTTCGG
CCGCGTGTTGAAATACATCAGGCAAATCAAACATCTTTGCAAGCCAATCC
ATAGTTAGCATTTCGAGTTCAGTGCAAGCGGGAGAAGCTATCCACGTAAA
ACCAACACATCCAATTGTATCAGCCAACATCCCACCCATTACAGCTGCAT
AACTGTTTGCTGTTGGGAAGTAACTAAAATGATagggaaatatttgtttt
taaata Run BLAST on NCBI transcript from alignment at scaffold_166:619729..621408+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049795 ID=TCONS_00049795|Name=TCONS_00049795|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at scaffold_166:619729..621408+ (Clytia hemisphaerica)
AAACATGAGACGATTGAGTTTAGAAAGTAGAGTATGCTAAGTTTAACACG
TTTTAAAACAAGCTTTTATCAGTGACCTAGTCTAAATTTCTGTCAActtg
aacacccctgtctcacagccccagtggaacttttttcttcagtggggata
aaaattcctattgaaatcccaatgcgGATAGAAgttctattgttcaaagg
ttaaaatAACCAGTGGGGATAgctttggagtgcaattttcaaacatttaa
tTTCGAATGGGGTTGATTTTTTTTACCAGGGAcgcaatttttgccaaatt
tttcagtggggctggggtcccagcaaATCTATGACACAGGGATGTACTTG
AAATGGTTTGATTTTCTAATGTTtaataaatttaaaactttatattttat
cCATGAGTTTCATCTCCTTGAGTTTGTTTTGCGTCTGTGATTATCATTCA
TTGATTCTTTGCTTATTATGTTCATTCTTTGAAAGTATATCtgcatgatt
ttttatttcatcccaTGCAAATTTGACATCCTTATTTTCGGTTAATCGAG
ACGCTATTACGAAACGTAAAACAAACTGATCATTAACATATGCAGGTGTC
ATGTGTATTTTACGAGCCTCGTTGACTCGCCTATTCAACTTGTCATTTAG
TGTGTTATCACCAATTAATCTGAAACAAACGAGACCCATCAACACATCAT
TGACCACTTCAAACCTTACATCATCACGTATCATTCCTTCAAATAATTGA
GCTTGTTGAATTTGACGTCGTATATTTTCTTGAAGACCTTTGACTCCATA
CGATTTAAGCACCATCCAAAGTTTTAAAGATCGAAAACGTCGTCCAAGAG
GGATTTGCCAGTGCCTGAAGTCAGGGATTTCCTGTTCATAATCATGTTTC
AAATACAGTGGATTGATATCAAACAGATTAATCAAATCCAGTGAATCCCG
AACAAACATGGCCGCACATGGGAAATTCACCATCAGCCACTTATTACAGC
TAACAACAAGAGAATCGGTATTTTCAATTCCCTTCATAAGATATCGATAC
TCCGGACAAATCATCGCCGCTCCTGCATATGCAGCGTCAACATGCATCCA
CAGTCCTTCCTCCCCTGAAACAGCACTTATCTCATCGAGTGCGTCAAACG
CGCAAACGTTGGTTGTACCGGCGGACGCACACACAAAGAAAGGAATCAAA
CCCTTAGCTTTATCTTCCTCGATTGCTCTTTTCAGCTCATCCCCTCGCAG
CCTAAATCTCTCATCTGTTTCAAGTAATCTTAATTTTGTTCCAGCTAATC
GCACATCTTTTTCAACTGACGAATGAGATTGTTTTGAGGTGTACGCTATT
AGTTTAGATCCGAAATCTTCGTCGTGACCATATTGACTCAACTTGCGATG
TTTTGCTGCTAATATTGCAACCAATGTTGACTCACTTGCGGATCCTTGAA
TAACCCCACCACCATGTCCTTCGGCCGCGTGTTGAAATACATCAGGCAAA
TCAAACATCTTTGCAAGCCAATCCATAGTTAGCATTTCGAGTTCAGTGCA
AGCGGGAGAAGCTATCCACGTAAAACCAACACATCCAATTGTATCAGCCA
ACATCCCACCCATTACAGCTGCATAACTGTTTGCTGTTGGGAAGTAACTA
AAATGATagggaaatatttgtttttaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049795-exon-scaffold_166-1491911889:619729..619754 | TCONS_00049795-exon-scaffold_166-1491911889:619729..619754 | Clytia hemisphaerica | exon |
| TCONS_00049795-exon-scaffold_166-1510915933:619729..619754 | TCONS_00049795-exon-scaffold_166-1510915933:619729..619754 | Clytia hemisphaerica | exon |
| TCONS_00049795-exon-scaffold_166-1575043694:619729..619754 | TCONS_00049795-exon-scaffold_166-1575043694:619729..619754 | Clytia hemisphaerica | exon |
| TCONS_00049795-exon-scaffold_166-1491911889:620379..621408 | TCONS_00049795-exon-scaffold_166-1491911889:620379..621408 | Clytia hemisphaerica | exon |
| TCONS_00049795-exon-scaffold_166-1510915933:620379..621408 | TCONS_00049795-exon-scaffold_166-1510915933:620379..621408 | Clytia hemisphaerica | exon |
| TCONS_00049795-exon-scaffold_166-1575043694:620379..621408 | TCONS_00049795-exon-scaffold_166-1575043694:620379..621408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:619729..621408 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006520 | cellular amino acid metabolic process |
| GO:0019752 | carboxylic acid metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016831 | carboxy-lyase activity |
| GO:0003824 | catalytic activity |
| GO:0030170 | pyridoxal phosphate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0019752 |
carboxylic acid metabolic process |
| biological_process |
GO:0006520 |
cellular amino acid metabolic process |
| molecular_function |
GO:0016831 |
carboxy-lyase activity |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0030170 |
pyridoxal phosphate binding |
Blast
BLAST of TCONS_00049795 vs. Swiss-Prot (Human)
Match: DDC (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2) HSP 1 Score: 385.571 bits (989), Expect = 2.029e-130 Identity = 184/348 (52.87%), Postives = 244/348 (70.11%), Query Frame = -2
Query: 30 PYHFSYFPTANSYAAVMGGMLADTIGCVGFTWIASPACTELEMLTMDWLAKMFDLPDVFQHAAEGHGGGVIQGSASESTLVAILAAK----HR------KLSQYGHDEDFGSKLIAYTSKQSHSSVEKDVRLAGTKLRLLETDERFRLRGDELKRAIEEDKAKGLIPFFVCASAGTTNVCAFDALDEISAVSGEEGLWMHVDAAYAGAAMICPEYRYLMKGIENTDSLVVSCNKWLMVNFPCAAMFVRDSLDLINLFDINPLYLKHDYEQE--IPDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRRQIQQAQLFEGMIRDDVRFEVVNDVLMGLVCFRLIGDN 1037
PY F+YFPTA+SY A++ ML IGC+GF+W ASPACTELE + MDWL KM +LP F + G GGGVIQGSASE+TLVA+LAA+ HR +L+Q E KL+AY+S Q+HSSVE+ + G KL+ + +D F +R L+ A+E DKA GLIPFF+ A+ GTT C+FD L E+ + +E +W+HVDAAYAG+A ICPE+R+L+ G+E DS + +KWL+VNF C+AM+V+ DL F ++P YLKH ++ I D+RHWQIPLGRRFRSLK+W V + YGVKGLQ IR+ +Q + FE ++R D RFE+ +V++GLVCFRL G N
Sbjct: 74 PYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME----KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSN 417
The following BLAST results are available for this feature:
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