TCONS_00049789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049789
Unique NameTCONS_00049789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049789 ID=TCONS_00049789|Name=TCONS_00049789|organism=Clytia hemisphaerica|type=transcript|length=386bp
ATATCGATTAACGCAGTCGGCAAAATTCAGAAGATAATACACAAAGATAG
CAATTGATAAAATGATCAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTA
ACATACGGGCAATGCCAAAGATATCCACACTGGCCAAGTGAATTTCGCTG
GTCATACGCAGGACGTCTTGGTAATGGCTGGAGATGCACAAGAATTTTGG
AAACAGCAGATCCACACACATGGGCGGACAATTACTTTTGCGAGCGAACC
GGACCAGGCTACATTGCAAGTGGTATGAGATGGAGTTCCGCTGGTCCAAT
CTCTGGCATGAGATGCACACGAATCATCGAGTTCAGCTCACCAGCCAAAC
ACACATGGCGAGATAACTATCTATGCGTTCCACANN
Run BLAST on NCBI

protein sequence of TCONS_00049789-protein

>TCONS_00049789-protein ID=TCONS_00049789-protein|Name=TCONS_00049789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MIKLLLIFGLLGLTYGQCQRYPHWPSEFRWSYAGRLGNGWRCTRILETAD
PHTWADNYFCERTGPGYIASGMRWSSAGPISGMRCTRIIEFSSPAKHTWR
DNYLCVPX
Run BLAST on NCBI

transcript from alignment at scaffold_166:500882..501415+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049789 ID=TCONS_00049789|Name=TCONS_00049789|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at scaffold_166:500882..501415+ (Clytia hemisphaerica)
ATATCGATTAACGCAGTCGGCAAAATTCAGAAGATAATACACAAAGATAG
CAATTGATAAAATGATCAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTA
ACATACGGGCAATGCCAAAGATATCCACACTGGCCAAGTGAATTTCGCTG
GTCATACGCAGGACGTCTTGGTAATGGCTGGAGATGCACAAGAATTTTGG
AAACAGCAGATCCACACACATGGGCGGACAATTACTTTTGCGAGCGAACC
GGACCAGGCTACATTGCAAGTGGTATGAGATGGAGTTCCGCTGGTAAGTG
ATGGAACGTTTttcaacgttgaaacaacgtttttcgGTTTTCTGTTAAGT
TTCCCTTGTATCTCAGGCGTTCACTGTCTTCCTGTTAGcaagagaaaata
ttatttaaaaatttgataATTATTTCTTCACCTCACAACAGGTCCAATCT
CTGGCATGAGATGCACACGAATCATCGAGTTCAGCTCACCAGCCAAACAC
ACATGGCGAGATAACTATCTATGCGTTCCACANN

Coding sequence (CDS) from alignment at scaffold_166:500882..501415+

>TCONS_00049789 ID=TCONS_00049789|Name=TCONS_00049789|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_166:500882..501415+ (Clytia hemisphaerica)
ATGATCAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTAACATACGGGCA
ATGCCAAAGATATCCACACTGGCCAAGTGAATTTCGCTGGTCATACGCAG
GACGTCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAAACAGCAGAT
CCACACACATGGGCGGACAATTACTTTTGCGAGCGAACCGGACCAGGCTA
CATTGCAAGTGGTATGAGATGGAGTTCCGCTGGTCCAATCTCTGGCATGA
GATGCACACGAATCATCGAGTTCAGCTCACCAGCCAAACACACATGGCGA
GATAACTATCTATGCGTTCCACANATGATCAAGTTACTCTTAATCTTTGG
CCTTCTTGGTCTAACATACGGGCAATGCCAAAGATATCCACACTGGCCAA
GTGAATTTCGCTGGTCATACGCAGGACGTCTTGGTAATGGCTGGAGATGC
ACAAGAATTTTGGAAACAGCAGATCCACACACATGGGCGGACAATTACTT
TTGCGAGCGAACCGGACCAGGCTACATTGCAAGTGGTATGAGATGGAGTT
CCGCTGGTCCAATCTCTGGCATGAGATGCACACGAATCATCGAGTTCAGC
TCACCAGCCAAACACACATGGCGAGATAACTATCTATGCGTTCCACAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031562XLOC_031562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049789-proteinTCONS_00049789-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049789-exon-scaffold_166-1491911889:500882..501174TCONS_00049789-exon-scaffold_166-1491911889:500882..501174Clytia hemisphaericaexon
TCONS_00049789-exon-scaffold_166-1510915933:500882..501174TCONS_00049789-exon-scaffold_166-1510915933:500882..501174Clytia hemisphaericaexon
TCONS_00049789-exon-scaffold_166-1575043694:500882..501174TCONS_00049789-exon-scaffold_166-1575043694:500882..501174Clytia hemisphaericaexon
TCONS_00049789-exon-scaffold_166-1491911889:501323..501415TCONS_00049789-exon-scaffold_166-1491911889:501323..501415Clytia hemisphaericaexon
TCONS_00049789-exon-scaffold_166-1510915933:501323..501415TCONS_00049789-exon-scaffold_166-1510915933:501323..501415Clytia hemisphaericaexon
TCONS_00049789-exon-scaffold_166-1575043694:501323..501415TCONS_00049789-exon-scaffold_166-1575043694:501323..501415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:500882..501415 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	31.3216	27.5865	821.859	269.74	1149.17	1659.36	884.112	891.677	733.208	748.605	236.182	189.732	91.3049	90.9071	0	0	0	0.208939	0	0	0	0.764777	0	0.226664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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