TCONS_00049783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049783
Unique NameTCONS_00049783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049783 ID=TCONS_00049783|Name=TCONS_00049783|organism=Clytia hemisphaerica|type=transcript|length=1461bp
AAGTGTTTTTGTGGTTTGGGATCTTGGCATTAGACGGAAATTAAATCTCA
AGATTTGTTATTGACAAAGTAATACTCGTGGCTTAGATTGGACTTACATG
TCGACAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTGGAAGAATT
GCAAACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTCAGG
ACGAACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATGACATTATC
GTGGAATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGATGA
CTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAAATA
TCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACTGCC
ACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAGGAT
AGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATCAAA
CGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTGAAG
ATCGTGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGC
TGAAGGAAATACTCCACTACATTTAGCATGCGAAGAAGAACGAACAGAAG
TAGCAGAAATACTGATCCAGTATGGTTCATCCATTACCTTATTCAATAAG
GAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAGACT
GGCGGAGAGTGAAGACAGTAAAAGTTGATTATGATTCTTTTGCACATGCG
TAGAAGAGAGGTTTGGCAgattttgtgttttcccttcGTAGATTTTATTA
GAAATGCTTCAGGGGTATTTGGTGTATTATTTCTGTGAAAATGCGGGAAG
TGAATTTATTTTTGGTGAGCAGAAGCAGGATCACCACCAATGAAGTATaa
ccccgaagggctagaatcgaatctccttggtaggatttgaagccaacaaa
tcctaccaaacttgcgcggccttgagcgacctgCCTGGTTTTTACGCAAA
TGACggattaaaactaaaatttaccgcttaatttcgaaaaaaatatcact
cgaaaacaaaggaattgctagattcaatccgtcataaaaaatacggCGTA
GATTTTAAAGGCTTCCagtttttcttgcctgagaaaggttagcgattcga
ttctagcccttcgggcttatacttcattgatcaCCACTACTGATTGAGTC
GTAATGACGTCATCCGTCCgttttaaccaatcagagaacatttctttaaa
agttttatttattttatgaattttttataaattcttATACGAAAATCATT
GTAAAAGTATGCTTTGTTCATATTATtcttaaaattgcattttttcgcca
ttttatttttttcgtaaaatttttgtgtttctatacatcagacaagaaaa
aagaaattgaa
Run BLAST on NCBI

protein sequence of TCONS_00049783-protein

>TCONS_00049783-protein ID=TCONS_00049783-protein|Name=TCONS_00049783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MSTDVICQLAYDGKLEELQTKLRTDLKLASKKFQDERQPLHWACSGGHDI
IVEYLLNVCNAPVDEPDDSGWTPLIIASSAGRENIVKMLLDKDANPNNLT
ATGQSALHYAASRNRYRIAELLVASNAELNVQDQTSFATPLHRAASKGNL
KIVKLLLENECNPNLKDAEGNTPLHLACEEERTEVAEILIQYGSSITLFN
KEEKTPIELAPPYLQRRLAESEDSKS
Run BLAST on NCBI

transcript from alignment at scaffold_166:358140..364908+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049783 ID=TCONS_00049783|Name=TCONS_00049783|organism=Clytia hemisphaerica|type=transcript|length=6769bp|location=Sequence derived from alignment at scaffold_166:358140..364908+ (Clytia hemisphaerica)
AAGTGTTTTTGTGGTTTGGGATCTTGGCATTAGACGGAAATTAAATCTCA
AGATTTGTTATTGACAAAGTAATACTCGTGGCTTAGATTGGACTTGTGAG
TGTATTCCTTTTCTTCTCTTAAAGGCCTCTTTTAGATAAATTTCGTCATA
AAGAAATATTTGTGGAATCACCAATCTTAACATTGTAGAGCTTAGGCATT
ATTTTAGGAGTAGAATTTCCTCCAGCCACTTATATATCTGAAAAGTTGAA
CACAGAAATCTTTTTAGCTGTAATACCTATGGGCTGGATAGGACAGATAC
AGATATACATATGATATGAGGCACTTTAATTGCTCTAAACAGCTTTTAAT
AGTGTTTTGATTTGCTGTTTAATCCTTGATGTCCTTGATATGTTGAATAT
TAGACAGCTGGTAATTAAAATTATGTCATTATAGAGTGGTGGAGTTTTTT
AGGGCCTAATAATGGCACACTGTTTTATTTCGTTTAAAGTTTCATGATTT
TAAGAAGTTAAAGCAATTATCGGTAACGCTTTTGAATCGTGTGTTCGAGT
TTATAAGGATTTTGATCGGGCTCCATTACAGTTGCACGATTCTTTTCTTG
AGCAAGTGTTTTGCTCCTTGTCAAGCCCCAGAACATGCTGAAGGCTTTAT
TGTTTTAAGATCCAATTCTGAGTCAAGATATTTTTAGAGTGATATGCTTT
TAAAGATAGACTGATTATGGTCGAGTTTTGATTTAAAGTCACATGTTTTC
CTCCCACAACTCTTGTGGTTTTAGTAGAATGTTTTCATTTACCTTGTTTT
TGGAGCCTGTCTGTAAAAGTTGGTGTTTCATAATTCTTCAACGTGATCAA
GGCTGAAAGTACCGGTCACATTTGAGAGATCATTTTGCGATTACAGAGTA
CACGCGTTTCTTGAGGTTATAAAGGTTGGATAATTCGATTTGATGATAAA
AATTCGtttcatttgtttgtttgtttgtttgtgttAACTTATATGATTTC
GTTATCCTTTTGGAGCTCTGTTGTCAGACCGCGAAGCTTCTCCGGTTTTT
TTAGTGGAACAGAACTTCTTTATTCCtttgataaatctttttctcaaaat
ctcgTTTCAATTTGCGTGAGTAATTacaaaaattgaccaaaatgaCTTCT
TaatgggaactaattttgagaAAGTACAACTACAtctctttttcaaaagt
tgTTTTATTGGTCTATCAACTTTGAATACATACAATTACAAAGTTTTTAC
AGAACTTTCACTTATTGATCAATCTGTTTGTGGTAGTGTGTACAATTGCA
GAGAATATTGGAAGCCAGCTACAACTTCACAAGCGATTGTCGTGAACATT
TTGTATTTGTTTAATCACAAGAGAGCTATAAACTGAGTTAATAAATTCGT
AAGAAATAACGTTGTGACTGCCAGGAAGTCTTACACAATGAGGAAACTTA
TAGGGCTATCATCGAGAACCAACCGTAAACTGATCAGTCCCTCACCTTTC
CTTGATTTAGACATGTCGACAGATGTGATATGCCAGTTGGCTTATGACGG
GAAACTGGAAGAATTGCAAACGAAATTGAGGACCGATTTGAAACTGGCAA
GCAAAAAGTTTCAGGTAAGTAATGTCTACTTTTTTAGTTTGTGTAATTTT
TAGTGGGTCTTTGGTGATCTCATCATAGTTTAAAGTCTAGATGTAGTGAT
AATACGCTGTTCTCGAGATCTTCAAAATCATCGTGTTTGAACACGGACGT
TGGGAATTATAACTTTAGCAAGCGATGGCGATGGCAACAAAATTTGGAAT
AATTTTGTACACTATTGATAAGAGTGTTTTTAAATCTCTTCGAAATACAA
TTTCCTTCAATAGAGAAAAATTCGTGTTTTTAGGAACTATATTTTATACC
ACTCTCCTGAGGATAAAAGAGACCGATGTtctagttcgaattagagagag
ttggctgaattttttagaaagataATTTATTCGCGAAGCGGAAAGAAAGA
CAAGACACGGGTGTTTGGTGcaatttttatgacaaaaaacGCGGACTTCC
GTATGTAGATAACATTACAGAGATGTATTGAGTATCGAGATGCATCATAA
GATTAATCTCTCATAAAAGTCCTCTTAAACGCTAAGCATCATTTCACAGT
TGAAGTATTTCTCAAGAGATTACCTTGCTTAAAATAGTAACAATATCACT
TTTGGACGATattattgatgttttttttgtctAAGGAGTAAAATAAAATC
GATAACAAATTTTCTTGGCATCGACAGTTATGATTCATTTTTTCATTCGA
GTTAAAACGATCAAGAAGTCAGAAAAATAGCAATTGCTTTATTATGTAGC
TATAGTTTGCGAATGGACCAAAATTATATTCTGATTTTGATGTCAACTTT
ATGATTTCAGATAAACGCATAGTAAAGGTTAGACACGATCGAATGTTGAT
AGATGTATACCCAAAAGAGCATGCGACACTGACATTCCTACCTTCGGCTA
CTTTGATGGGATTACATTTTCGCTGGGATTAAATTTGGTGGTTTAGCTCA
TCTGcataatttgacattttttgagttttgtttaaaaatattttgcggat
aaggcctttccaaatttccattgggacttaaatttcgcggatgacaccca
aatccgcgaaatttaattacaGCCAagttttatcccattaaagtataagg
TTTTGATTAATCTACCCTGTTTATTCAGAACTCCCGTATAATGGGTAGAT
ATACCGGTACTATGATGAGGAGGATAAGCATAAATATCCCCgtctaaata
attatttttgtctCTTTGCAGGACGAACGTCAACCATTACATTGGGCATG
TTCAGGGGGCCATGACATTATCGTGGAATATCTTCTAAATGTTTGCAATG
CCCCCGTCGACGAACCCGATGACGTAAGTTATTTCTTAATCCTCAAAATA
TTTGTAATTGTTAACTGACTTGGTCATTTCGACAAGGGGTCACTATCCGT
Cccaaagaaaatgaaacaagagagtgggcagaaagtttcgtgggcagaaa
gtttcgcgaagtcaaaaagtcgcgaaatttagcgaatttaagtttcgcga
attatggttttagccgaaatttcacagatagAACTTTCACGAATTCATAT
AAAATTTACCTTTTTTGGTAACAAAAACttttcaggtttaatttcttacc
tggccgaaactttcgcgaaaaaggatcaaaatcgcgaaaaacgcgaaagt
ttctgtccgcgaaagtttctgcccttaaagtactTTAGAAGGTAATTCCG
CGAGAAATTCTGAAGAGTCGACTTTCAAAGGTTTATTTTCAAGTGAAAAA
GGATCTatctaaaaatctttctttcgtCATGAGCTTTTCTTTAATATGTG
GCACAGTTTCTGGTCTGACACATTTCGTTTTGATGATTGTGAACTAAGCC
AGGTTTATATCTCTTTTGTTAAGAATTTAACGAAAATACATAATTAAATC
AAGTAAAAACAGACggatcgcgaaaattaatcttcgccaaactaaaaatt
tgttttgctcTCCTGAAGTATTTCATTTctatttgtccatttttctaaat
aGTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAAAT
ATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACTGC
CACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAGGG
TAAAGGCCggactccactttcgcgcgaaatgggcgacagttttcttaacc
ttttttgcctgaagaaaagattacgtcataaaaaagtttcgcgcgaacaa
aaaaaaaagttgaaggaagttctacttttttcatccgttacgtcaatttc
gaacaatggaattgcttcatttttcaaccgaccttTACAACAACGTCAAA
ATGTTTttgctcatgtcgcgcgaaagtggagaccgacctacgtaaacaca
tttttataagcatgcaATCGAGGATTATAGGAAGGGCTGGTTCGAAGAAA
ATACGTACAAAGATACATTCTTTTTTATATGTATCAAAATCAATATCATT
GCAATACTCGCTCTCAAATAGAATAATTACTTCAAACCACCtacaggttt
tttttataagaacatccaaaaatttttgaagcctttggatgacttttcag
tttccagcgttttcctaaaaaaatggTGTTTTAGTGTCaattaaagcttt
aaaatgttaatcttaaattttggccatcggagccttatattcttatataa
tttcttataaaaaagtgtaaaactTACTCTTTCCCTTTTTATATCCAAGG
AACTTGATCATATCTTTCTATTATTTGTAGATAGCGGAACTGCTGGTTGC
TTCAAACGCAGAATTGAACGTTCAAGATCAAACGTCATTCGCCACGCCTC
TCCACAGGGCTGCTTCAAAGTAAGAccaaattcttttcttttcaaaaaga
tCCTCTTTTTGAACAAGCCTAGTTTGAGTGTATTTGGAAGCAGGGAATTT
TCCTAAAATCGGCTTGATTTTCAAGTGGTTTAGTCATTTTGTCTGGACTC
TTAACTGGATGTCTAAAGGGGAGTGAGGGGTGCTTTGGTTCTATAGGTGT
ccgtgaaattttctggttTCGAATTGAGGCCTTATAAGTGAAAAGCTGCA
GAGTTCAGTAAATTCTATAATatacaatgaaaaaagaattcatATTCATA
TTCGGAGTCGTAGCCGCGAAGTTTCGGTTTCGGGGAATGAGATTGGGaaa
attttaacctttttaAGGGTTTTGCCTTAAATATGCTCAAATGCATTAga
atagtttttcttttcatttaagAGGTAATTTGAAGATCGTGAAATTATTG
TTGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAAGGAAATACTCC
ACTGTAAGTCATTAGTTTGTTTTTGAAAGGGAAGAATGTGGTATTGACCT
CGAAACAGGGGGATTTGGATCAAGTTAAAAAGAGTGGAATGATTTCAAAT
GTCTGTATATATTTGGTGTGCATTTGGTATTATTTTATACTGGCAGGCTC
GACCCGATCCTATTTTAACACAAGGGTTAAAAGGTGTAAGGCTCCCCTCC
CCATTTAAAGGTTTATCACAGAGCCTCGATCTGCTCCAAAAAGATGAGGT
GTTCTTACGGAACATTGTTATCGGGATCTGCTTATAGATTATAAATATAT
AAggtttcaaaatattgttaaaatctAAGTTAATTTTACATCTGTGATAT
TGGTTTTGTGTTATTTTCTAATAGCCATGGgttcaaaaatcgaaaaccaa
aaagaagaataatttttagaaaatggtgctacttccaaagaccctcatta
gcatattttcattgcgctgaagcgatttcgaggggcTAAAACCGGCTGGA
ATGTGTATTTTGGTCACAAGACCGGTTTTTAGGGCTCTAAAGTTAGCTat
tttggcaatctctcattaactcaactttttttatttccagACATTTAGCA
TGCGAAGAAGAACGAACAGAAGTAGCAGAAATACTGATCCAGTATGGTTC
ATCCATTACCTTATTCAATAAGGTGTGTATAAACTTAGCTTGTGTGTTTT
GAAATACGAAGGTTGGCTAGCCAGCCTTTTGTGATGTGAAAAACTTCCAA
AGAAAATGGTAGTTGGTACTGCACTTGAAATACAAAATATATTACTGTCT
TGTTAGAAAGattatttttgagttttctgaaaaatcatcaaaatatgcct
tgtccggggggtcaactgatgcttgtccgggtggtaaaacccgttgtccg
gggggaccaaaagtcactttgtccggggggtaaatcactgaaaattgtta
tatcctccatccccatattcaaattttttctagaaaatcccatttcatat
tttaattttcgaaaatttaaagccTTTGTTTACCTCAATTCATTTCTTTT
ATCCGCAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAA
AGGAGACTGGCGGAGAGTGAAGACAGTAAAAGTTGATTATGATTCTTTTG
CACATGCGTAGAAGAGAGGTTTGGCAgattttgtgttttcccttcGTAGA
TTTTATTAGAAATGCTTCAGGGGTATTTGGTGTATTATTTCTGTGAAAAT
GCGGGAAGTGAATTTATTTTTGGTGAGCAGAAGCAGGATCACCACCAATG
AAGTATaaccccgaagggctagaatcgaatctccttggtaggatttgaag
ccaacaaatcctaccaaacttgcgcggccttgagcgacctgCCTGGTTTT
TACGCAAATGACggattaaaactaaaatttaccgcttaatttcgaaaaaa
atatcactcgaaaacaaaggaattgctagattcaatccgtcataaaaaat
acggCGTAGATTTTAAAGGCTTCCagtttttcttgcctgagaaaggttag
cgattcgattctagcccttcgggcttatacttcattgatcaCCACTACTG
ATTGAGTCGTAATGACGTCATCCGTCCgttttaaccaatcagagaacatt
tctttaaaagttttatttattttatgaattttttataaattcttATACGA
AAATCATTGTAAAAGTATGCTTTGTTCATATTATtcttaaaattgcattt
tttcgccattttatttttttcgtaaaatttttgtgtttctatacatcaga
caagaaaaaagaaattgaa

Coding sequence (CDS) from alignment at scaffold_166:358140..364908+

>TCONS_00049783 ID=TCONS_00049783|Name=TCONS_00049783|organism=Clytia hemisphaerica|type=CDS|length=4767bp|location=Sequence derived from alignment at scaffold_166:358140..364908+ (Clytia hemisphaerica)
ATGTCGACAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTGGAAGA
ATTGCAAACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTC
AGGACGAACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATGACATT
ATCGTGGAATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGA
TGACTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAA
ATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACT
GCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAG
GATAGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATC
AAACGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTG
AAGATCGTGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGA
CGCTGAAGGAAATACTCCACTACATTTAGCATGCGAAGAAGAACGAACAG
AAGTAGCAGAAATACTGATCCAGTATGGTTCATCCATTACCTTATTCAAT
AAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAG
ACTGGCGGAGAGTGAAGACAGTAAAAGTTGAATGTCGACAGATGTGATAT
GCCAGTTGGCTTATGACGGGAAACTGGAAGAATTGCAAACGAAATTGAGG
ACCGATTTGAAACTGGCAAGCAAAAAGTTTCAGGACGAACGTCAACCATT
ACATTGGGCATGTTCAGGGGGCCATGACATTATCGTGGAATATCTTCTAA
ATGTTTGCAATGCCCCCGTCGACGAACCCGATGACTCTGGTTGGACGCCT
CTCATCATCGCATCTTCAGCTGGTCGTGAAAATATCGTCAAAATGCTGTT
AGATAAAGACGCCAACCCAAACAATCTGACTGCCACCGGACAATCCGCCC
TTCATTATGCCGCCTCTCGCAACAGATACAGGATAGCGGAACTGCTGGTT
GCTTCAAACGCAGAATTGAACGTTCAAGATCAAACGTCATTCGCCACGCC
TCTCCACAGGGCTGCTTCAAAAGGTAATTTGAAGATCGTGAAATTATTGT
TGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAAGGAAATACTCCA
CTACATTTAGCATGCGAAGAAGAACGAACAGAAGTAGCAGAAATACTGAT
CCAGTATGGTTCATCCATTACCTTATTCAATAAGGAAGAGAAAACACCAA
TCGAACTCGCTCCTCCCTATTTACAAAGGAGACTGGCGGAGAGTGAAGAC
AGTAAAAGTTGAATGTCGACAGATGTGATATGCCAGTTGGCTTATGACGG
GAAACTGGAAGAATTGCAAACGAAATTGAGGACCGATTTGAAACTGGCAA
GCAAAAAGTTTCAGGACGAACGTCAACCATTACATTGGGCATGTTCAGGG
GGCCATGACATTATCGTGGAATATCTTCTAAATGTTTGCAATGCCCCCGT
CGACGAACCCGATGACTCTGGTTGGACGCCTCTCATCATCGCATCTTCAG
CTGGTCGTGAAAATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCA
AACAATCTGACTGCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCG
CAACAGATACAGGATAGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGA
ACGTTCAAGATCAAACGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCA
AAAGGTAATTTGAAGATCGTGAAATTATTGTTGGAGAACGAGTGCAATCC
TAACTTGAAAGACGCTGAAGGAAATACTCCACTACATTTAGCATGCGAAG
AAGAACGAACAGAAGTAGCAGAAATACTGATCCAGTATGGTTCATCCATT
ACCTTATTCAATAAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCCTA
TTTACAAAGGAGACTGGCGGAGAGTGAAGACAGTAAAAGTTGAATGTCGA
CAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTGGAAGAATTGCAA
ACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTCAGGACGA
ACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATGACATTATCGTGG
AATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGATGACTCT
GGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAAATATCGT
CAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACTGCCACCG
GACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAGGATAGCG
GAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATCAAACGTC
ATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTGAAGATCG
TGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAA
GGAAATACTCCACTACATTTAGCATGCGAAGAAGAACGAACAGAAGTAGC
AGAAATACTGATCCAGTATGGTTCATCCATTACCTTATTCAATAAGGAAG
AGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAGACTGGCG
GAGAGTGAAGACAGTAAAAGTTGAATGTCGACAGATGTGATATGCCAGTT
GGCTTATGACGGGAAACTGGAAGAATTGCAAACGAAATTGAGGACCGATT
TGAAACTGGCAAGCAAAAAGTTTCAGGACGAACGTCAACCATTACATTGG
GCATGTTCAGGGGGCCATGACATTATCGTGGAATATCTTCTAAATGTTTG
CAATGCCCCCGTCGACGAACCCGATGACTCTGGTTGGACGCCTCTCATCA
TCGCATCTTCAGCTGGTCGTGAAAATATCGTCAAAATGCTGTTAGATAAA
GACGCCAACCCAAACAATCTGACTGCCACCGGACAATCCGCCCTTCATTA
TGCCGCCTCTCGCAACAGATACAGGATAGCGGAACTGCTGGTTGCTTCAA
ACGCAGAATTGAACGTTCAAGATCAAACGTCATTCGCCACGCCTCTCCAC
AGGGCTGCTTCAAAAGGTAATTTGAAGATCGTGAAATTATTGTTGGAGAA
CGAGTGCAATCCTAACTTGAAAGACGCTGAAGGAAATACTCCACTACATT
TAGCATGCGAAGAAGAACGAACAGAAGTAGCAGAAATACTGATCCAGTAT
GGTTCATCCATTACCTTATTCAATAAGGAAGAGAAAACACCAATCGAACT
CGCTCCTCCCTATTTACAAAGGAGACTGGCGGAGAGTGAAGACAGTAAAA
GTTGAATGTCGACAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTG
GAAGAATTGCAAACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAA
GTTTCAGGACGAACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATG
ACATTATCGTGGAATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAA
CCCGATGACTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCG
TGAAAATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATC
TGACTGCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGA
TACAGGATAGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCA
AGATCAAACGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTA
ATTTGAAGATCGTGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTG
AAAGACGCTGAAGGAAATACTCCACTACATTTAGCATGCGAAGAAGAACG
AACAGAAGTAGCAGAAATACTGATCCAGTATGGTTCATCCATTACCTTAT
TCAATAAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAA
AGGAGACTGGCGGAGAGTGAAGACAGTAAAAGTTGAATGTCGACAGATGT
GATATGCCAGTTGGCTTATGACGGGAAACTGGAAGAATTGCAAACGAAAT
TGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTCAGGACGAACGTCAA
CCATTACATTGGGCATGTTCAGGGGGCCATGACATTATCGTGGAATATCT
TCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGATGACTCTGGTTGGA
CGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAAATATCGTCAAAATG
CTGTTAGATAAAGACGCCAACCCAAACAATCTGACTGCCACCGGACAATC
CGCCCTTCATTATGCCGCCTCTCGCAACAGATACAGGATAGCGGAACTGC
TGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATCAAACGTCATTCGCC
ACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTGAAGATCGTGAAATT
ATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAAGGAAATA
CTCCACTACATTTAGCATGCGAAGAAGAACGAACAGAAGTAGCAGAAATA
CTGATCCAGTATGGTTCATCCATTACCTTATTCAATAAGGAAGAGAAAAC
ACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAGACTGGCGGAGAGTG
AAGACAGTAAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031558XLOC_031558Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049783-proteinTCONS_00049783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049783-exon-scaffold_166-1491911889:358140..358234TCONS_00049783-exon-scaffold_166-1491911889:358140..358234Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:358140..358234TCONS_00049783-exon-scaffold_166-1510915933:358140..358234Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:358140..358234TCONS_00049783-exon-scaffold_166-1575043694:358140..358234Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:359650..359753TCONS_00049783-exon-scaffold_166-1491911889:359650..359753Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:359650..359753TCONS_00049783-exon-scaffold_166-1510915933:359650..359753Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:359650..359753TCONS_00049783-exon-scaffold_166-1575043694:359650..359753Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:360961..361062TCONS_00049783-exon-scaffold_166-1491911889:360961..361062Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:360961..361062TCONS_00049783-exon-scaffold_166-1510915933:360961..361062Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:360961..361062TCONS_00049783-exon-scaffold_166-1575043694:360961..361062Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:361742..361888TCONS_00049783-exon-scaffold_166-1491911889:361742..361888Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:361742..361888TCONS_00049783-exon-scaffold_166-1510915933:361742..361888Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:361742..361888TCONS_00049783-exon-scaffold_166-1575043694:361742..361888Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:362520..362608TCONS_00049783-exon-scaffold_166-1491911889:362520..362608Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:362520..362608TCONS_00049783-exon-scaffold_166-1510915933:362520..362608Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:362520..362608TCONS_00049783-exon-scaffold_166-1575043694:362520..362608Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:363012..363092TCONS_00049783-exon-scaffold_166-1491911889:363012..363092Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:363012..363092TCONS_00049783-exon-scaffold_166-1510915933:363012..363092Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:363012..363092TCONS_00049783-exon-scaffold_166-1575043694:363012..363092Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:363680..363761TCONS_00049783-exon-scaffold_166-1491911889:363680..363761Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:363680..363761TCONS_00049783-exon-scaffold_166-1510915933:363680..363761Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:363680..363761TCONS_00049783-exon-scaffold_166-1575043694:363680..363761Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1491911889:364148..364908TCONS_00049783-exon-scaffold_166-1491911889:364148..364908Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1510915933:364148..364908TCONS_00049783-exon-scaffold_166-1510915933:364148..364908Clytia hemisphaericaexon
TCONS_00049783-exon-scaffold_166-1575043694:364148..364908TCONS_00049783-exon-scaffold_166-1575043694:364148..364908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:358140..364908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	4.64659	1.87888	3.24097	3.65258	6.21192	9.96051	2.09952	5.57657	1.69109	3.6742	5.39116	8.37893	5.70005	5.265	4.34021	3.30835	0	0	6.48952	4.83188	1.88917	1.06401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00049783 vs. Swiss-Prot (Human)
Match: PSD10 (26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.151e-67
Identity = 111/224 (49.55%), Postives = 154/224 (68.75%), Query Frame = 2 
Query:   98 MSTDVICQLAYDGKLEELQTKLRTDLKLASKKFQDERQPLHWACSGGHDIIVEYLLNVCNAPVDEPDDSGWTPLIIASSAGRENIVKMLLDKDANPNNLTATGQSALHYAASRNRYRIAELLVASNAELNVQDQTSFATPLHRAASKGNLKIVKLLLENECNPNLKDAEGNTPLHLACEEERTEVAEILIQYGSSITLFNKEEKTPIELAPPYLQ---RRLAES 760
            +S  ++C LAY GKLEEL+  +  D  LA++  QD R  LHWACS GH  IVE+LL +   PV++ DD+GW+PL IA+SAGR+ IVK LL K A  N +   G + LHYAAS+NR+ IA +L+   A  + +D    AT +HRAA+KGNLK++ +LL  + + N++D EGNTPLHLAC+EER E A++L+  G+SI + NKEEKTP+++A   L    +R+ E 
Sbjct:    5 VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 226
The following BLAST results are available for this feature:
BLAST of TCONS_00049783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD108.151e-6749.5526S proteasome non-ATPase regulatory subunit 10 OS... [more]
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