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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049740 ID=TCONS_00049740|Name=TCONS_00049740|organism=Clytia hemisphaerica|type=transcript|length=2878bp
gtttttatcattttttatataagagcaaactatataagcacattagaaca
taaggcttcaatggccaaaatattaagaaaacaTTTACGGCTTTTTTACA
AACTCTCAACACCAATTCTTTTCGGGAAACacaaaaatactcacaaaatg
atgaaaataagaacaataaaCAGTTTATAAACATTATTAGGGCTTAAAAC
TCAGAAATCtcagaacatccaaaggcttcacaAAAgttctggatgttctt
ataaaagacgtGTAGATCTCATCTCAACTatgagactgttcatctaacgt
ttccagaccttctaaaaagaacgacaaataactattaaaataCGACAAAA
AGAACggcaaaccctaaccctaatcctaaccctaactatcaaataGCGAT
ATATTTCGCCGTCCCAAACCCCGACTTCCACACCTACATATTCATTCCTT
TTTGTACTTTACGCTATTTAAAACAACTAGCGgtttaaagaacgataaat
tacgCATCTCTATTTGggtgggacaagctggagtttttacaagctcttat
ttgatttggttggttgttaagatgtaataaaagaatcttattactttttc
taaagaacgcgtcatctctatcactttaaatgaccaactagtgaagtatc
ttgtaaaaactccagctcatcccatttgggtgagctggaaacattagaaA
AACTAACTCCAACTAATTCCATTTTGTGGAATTTTCCATTTTCTCTTGTT
GTCAATAAACACAGAAAGTAATCACAGTTCATCTTGATTTTCGAATGTTA
CTTTCAAGCATTAATGCTTCCAATTTTCGAGGATATATTACTTTTATCTT
GACAACTGCCTTGACACCGATCATTGATCAATTCTGGGTTGCGTAGCAAC
GTGTATGCAACGTACCAACGGTTTCGGGCTATTTTACCGCTCTTTACCGA
CGCAGCTATTGGTTGAAACGAACAGTCGGATCCACGAGTCAAAGGGCTTC
CCCACACATTTCTGGTGAGCTTTTGAGACGTGAGCTGTGATATATTTCGA
ATGTGAGGTTCCATGAGGAATTGACAGAAGCAACGCATAATTGGGTTCTT
GAAGACGTTCTCCACACGTAAAAAGGAGCTGTACGAATTCGATATATCCA
TACTCTTGAAAAACATTATTGGGTTACGATCAATGCGACCATAAAATAAC
AGCAAACTGAAAATGATGAAGAAGAGACGTTTGACCAGGGACATCAGACC
CGTGAACACATTCacgaagaataaaaagaaggaaAGGACATAAAATAAAC
GTGGATGCTTCAGATTAATTTGCATCTTTGATAATTGCAAATCGGAGAAA
TAATATCGGATGCTTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCC
AATGAGAGATAATATGTAGCGAAGAAATATCAAGACTAGTGTTCCTGTTG
CTATAGCTGCTAGGATATAAATAATCCCAACAACGATGCCAACTATCACC
AAACAACATAGAAAACCAATGAGCATTGCACTGATTAGGTAAGCTGGAAA
CACCAATCGATGGTACAAAGCGATATTATGGCAACCATCATCTTTCTGGT
AAAGGTTGTGTTTTCCCGTGTATATTGCCAGAGTATCATTTTGGTAACAG
TACAAGAAATGAACCACCATGGCTAGGTACAAGACAATACTGATTACCAA
CCCTAAATACCAGGCTATTTCGATGTGTTTGTTAGAATTACTTTTAAATA
ACTGTAAAATTAGGGACTGTATTATAAACAAAGTGAAATACAGCAAGACG
AAAATCACAGCCATACATTGAAGAATTTCACCAGGAAATTTAAACCACGG
TTTGAAAacatatttcaatttttgaaaatgagttAGCTGCGACTGTTCGT
TTGTCTGTTGCAAAAGATTTTGCAAATACAGAATTTGATGTTTATCAACG
ACGCTTTTTTCGTTTGTTGGGAGTTCGTGACAACCTGTTTTGAAGCACGT
ATATAAGCGATATCCGAAACCAAACAAGATGGCAGTGAGAAAGATGAAAC
TTGGTACCACAGCTATTGCAATATTCTGTTGTAATGCAGTTTTCGATGCA
CAGGCATCGTTAAAATCTAACTGTAGTCCAAGAAAGATAATCTCCCATAC
AGTGTATCCGATTCCAACAGCCGATGAAACAAGTATATGCGGAGATGAAA
TCAACGCAAAAAGCGGGAAAGATACAAACCCAATCAAAGTTGCTATCAGG
ATCCTTGAGAGAAATGAACAAAGATAATATTCTGGTTGACCTGACAAGCT
TGAACAAAGTGTAAGTCCAACAGTTGTACCAGTATCTCCGATAATGTCTG
CAATCTGAAGCGACAGATGACCAAAcactaatgacgtcatcaatcgaTTT
CGGTCATTGTCTTGCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTACC
TTTTTTAAGTCGAGAGTAAATCTGCATGAAAATTATGATCAACGTTGGta
taaaaaagttgaataccAATACAGTGGTATTAGAGGTCGCAGTTGACTgg
caagacatttttttgatttcttgaaTCAGCACACCactttttttctctat
ttcatTTGCGATATACCATATACAGCTTCATACACACAAACTACTATTGA
TATTTTAACACACGAAAGATACCATCAGATTTTCAAAAGGACAGGATCAG
ACTcgataaaacaaattttttgacaaagttTCTTCTTGTAGATAATATTC
TAATAGAGACAAAACATCAAGAGTCAAATTAGATTGCTATATTCGTAACC
taaatcatttttgtaattcttttattGTGACCGCAATCAAAACCAATTTG
CCGTACTAATGATATGTTTCTAGGAAAC Run BLAST on NCBI transcript from alignment at scaffold_166:14302..17592+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049740 ID=TCONS_00049740|Name=TCONS_00049740|organism=Clytia hemisphaerica|type=transcript|length=3291bp|location=Sequence derived from alignment at scaffold_166:14302..17592+ (Clytia hemisphaerica)
gtttttatcattttttatataagagcaaactatataagcacattagaaca
taaggcttcaatggccaaaatattaagaaaacaTTTACGGCTTTTTTACA
AACTCTCAACACCAATTCTTTTCGGGAAACacatagtctagcaagctaga
cgactaattcagacataatagaaataaagcaaaaagtaatggagggagca
attttagtcgtctagaaacctttgtgcactaactccaaacaaaagaaaag
tgtcaataatacaattataatttttacccactcaaaaaaattcttgaaaa
aaaaatgtgtgtggatttgtgtgttaaaagttttttcattttgagttgat
tttgttgtgagagtttgttattgcttgataaattgttttctcgctgcgca
agtttctgcgtagctagccggggtattTAAAAGGCTGGAACActggattc
ttccagtcgtttatacaaactaaatcccgtattattagtagtattagtat
tattagtattacacgcattataaacgactccagtctaggaaacacaaaaa
tactcacaaaatgatgaaaataagaacaataaaCAGTTTATAAACATTAT
TAGGGCTTAAAACTCAGAAATCtcagaacatccaaaggcttcacaAAAgt
tctggatgttcttataaaagacgtGTAGATCTCATCTCAACTatgagact
gttcatctaacgtttccagaccttctaaaaagaacgacaaataactatta
aaataCGACAAAAAGAACggcaaaccctaaccctaatcctaaccctaact
atcaaataGCGATATATTTCGCCGTCCCAAACCCCGACTTCCACACCTAC
ATATTCATTCCTTTTTGTACTTTACGCTATTTAAAACAACTAGCGgttta
aagaacgataaattacgCATCTCTATTTGggtgggacaagctggagtttt
tacaagctcttatttgatttggttggttgttaagatgtaataaaagaatc
ttattactttttctaaagaacgcgtcatctctatcactttaaatgaccaa
ctagtgaagtatcttgtaaaaactccagctcatcccatttgggtgagctg
gaaacattagaaAAACTAACTCCAACTAATTCCATTTTGTGGAATTTTCC
ATTTTCTCTTGTTGTCAATAAACACAGAAAGTAATCACAGTTCATCTTGA
TTTTCGAATGTTACTTTCAAGCATTAATGCTTCCAATTTTCGAGGATATA
TTACTTTTATCTTGACAACTGCCTTGACACCGATCATTGATCAATTCTGG
GTTGCGTAGCAACGTGTATGCAACGTACCAACGGTTTCGGGCTATTTTAC
CGCTCTTTACCGACGCAGCTATTGGTTGAAACGAACAGTCGGATCCACGA
GTCAAAGGGCTTCCCCACACATTTCTGGTGAGCTTTTGAGACGTGAGCTG
TGATATATTTCGAATGTGAGGTTCCATGAGGAATTGACAGAAGCAACGCA
TAATTGGGTTCTTGAAGACGTTCTCCACACGTAAAAAGGAGCTGTACGAA
TTCGATATATCCATACTCTTGAAAAACATTATTGGGTTACGATCAATGCG
ACCATAAAATAACAGCAAACTGAAAATGATGAAGAAGAGACGTTTGACCA
GGGACATCAGACCCGTGAACACATTCacgaagaataaaaagaaggaaAGG
ACATAAAATAAACGTGGATGCTTCAGATTAATTTGCATCTTTGATAATTG
CAAATCGGAGAAATAATATCGGATGCTTAAGCGTTGGATGATTTTAAAAA
CGATACCAGTGCCAATGAGAGATAATATGTAGCGAAGAAATATCAAGACT
AGTGTTCCTGTTGCTATAGCTGCTAGGATATAAATAATCCCAACAACGAT
GCCAACTATCACCAAACAACATAGAAAACCAATGAGCATTGCACTGATTA
GGTAAGCTGGAAACACCAATCGATGGTACAAAGCGATATTATGGCAACCA
TCATCTTTCTGGTAAAGGTTGTGTTTTCCCGTGTATATTGCCAGAGTATC
ATTTTGGTAACAGTACAAGAAATGAACCACCATGGCTAGGTACAAGACAA
TACTGATTACCAACCCTAAATACCAGGCTATTTCGATGTGTTTGTTAGAA
TTACTTTTAAATAACTGTAAAATTAGGGACTGTATTATAAACAAAGTGAA
ATACAGCAAGACGAAAATCACAGCCATACATTGAAGAATTTCACCAGGAA
ATTTAAACCACGGTTTGAAAacatatttcaatttttgaaaatgagttAGC
TGCGACTGTTCGTTTGTCTGTTGCAAAAGATTTTGCAAATACAGAATTTG
ATGTTTATCAACGACGCTTTTTTCGTTTGTTGGGAGTTCGTGACAACCTG
TTTTGAAGCACGTATATAAGCGATATCCGAAACCAAACAAGATGGCAGTG
AGAAAGATGAAACTTGGTACCACAGCTATTGCAATATTCTGTTGTAATGC
AGTTTTCGATGCACAGGCATCGTTAAAATCTAACTGTAGTCCAAGAAAGA
TAATCTCCCATACAGTGTATCCGATTCCAACAGCCGATGAAACAAGTATA
TGCGGAGATGAAATCAACGCAAAAAGCGGGAAAGATACAAACCCAATCAA
AGTTGCTATCAGGATCCTTGAGAGAAATGAACAAAGATAATATTCTGGTT
GACCTGACAAGCTTGAACAAAGTGTAAGTCCAACAGTTGTACCAGTATCT
CCGATAATGTCTGCAATCTGAAGCGACAGATGACCAAAcactaatgacgt
catcaatcgaTTTCGGTCATTGTCTTGCAGGAACAGGAATGGTGCTTGTG
CTGTCAATTTACCTTTTTTAAGTCGAGAGTAAATCTGCATGAAAATTATG
ATCAACGTTGGtataaaaaagttgaataccAATACAGTGGTATTAGAGGT
CGCAGTTGACTggcaagacatttttttgatttcttgaaTCAGCACACCac
tttttttctctatttcatTTGCGATATACCATATACAGCTTCATACACAC
AAACTACTATTGATATTTTAACACACGAAAGATACCATCAGATTTTCAAA
AGGACAGGATCAGACTcgataaaacaaattttttgacaaagttTCTTCTT
GTAGATAATATTCTAATAGAGACAAAACATCAAGAGTCAAATTAGATTGC
TATATTCGTAACCtaaatcatttttgtaattcttttattGTGACCGCAAT
CAAAACCAATTTGCCGTACTAATGATATGTTTCTAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049740-exon-scaffold_166-1491911889:14302..14433 | TCONS_00049740-exon-scaffold_166-1491911889:14302..14433 | Clytia hemisphaerica | exon |
| TCONS_00049740-exon-scaffold_166-1510915933:14302..14433 | TCONS_00049740-exon-scaffold_166-1510915933:14302..14433 | Clytia hemisphaerica | exon |
| TCONS_00049740-exon-scaffold_166-1575043694:14302..14433 | TCONS_00049740-exon-scaffold_166-1575043694:14302..14433 | Clytia hemisphaerica | exon |
| TCONS_00049740-exon-scaffold_166-1491911889:14847..17592 | TCONS_00049740-exon-scaffold_166-1491911889:14847..17592 | Clytia hemisphaerica | exon |
| TCONS_00049740-exon-scaffold_166-1510915933:14847..17592 | TCONS_00049740-exon-scaffold_166-1510915933:14847..17592 | Clytia hemisphaerica | exon |
| TCONS_00049740-exon-scaffold_166-1575043694:14847..17592 | TCONS_00049740-exon-scaffold_166-1575043694:14847..17592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:14302..17592 + |
Blast
The following BLAST results are available for this feature:
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