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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049702 ID=TCONS_00049702|Name=TCONS_00049702|organism=Clytia hemisphaerica|type=transcript|length=1113bp
CTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTG
TATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCC
AGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGA
CCAGTATGGCTGATCTGGAAAATTGCAGTTTTCACCAGCAGTcatttcaa
agtttaataagAAAGGGGTTATGAAAGCTGATTGCAGAAATGCTGATGAG
AGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGTTGCAGGTGCAAAGCAG
ATTCCGTTCATCTCAACTAAATTTCTTTAATGCTGTTATTACCATTATGA
AAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCTGTTTTGATAATCCCTC
CACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTAA
ACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACAA
GGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCTT
TTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCCA
GTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGAT
ACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACCGG
AATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACG
AGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTCATTGATGGAC
GTGAAATTCGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATAT
GATCCAAGACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAG
AGATCGAGACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTC
GCAGAAGGTGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATT
TTAAGTGAAGCCCTctgaagcatttttaaaaaactaaagCTTCATACGTT
TGACAATCATTAATTATTGCTATTTgatgaatgtttgaaaaaccaCTTGA
CAGGAATTTTCGC Run BLAST on NCBI transcript from alignment at scaffold_165:179583..185537- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049702 ID=TCONS_00049702|Name=TCONS_00049702|organism=Clytia hemisphaerica|type=transcript|length=5955bp|location=Sequence derived from alignment at scaffold_165:179583..185537- (Clytia hemisphaerica)
CTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGTTG
TATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCTCC
AGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAGGA
CCAGTATGGCTGATCTGGAAAAGTAAGTCTAAATTTGTCATTCAGTTAAA
ATTGATCATTTATCGTAATCCTCTTTACTTACCCTCTGGCTTTTTAGAAT
CAGAGACAGTGGTATAAAAAGAGTCTTTTCTGAGTAAGAATTTATCAATG
CTGTACTGTATGTATGTATATTGGAAATCTTGGCTGATTTGTTGTGTTGA
GTCAATTTTTCATCCTCAGATTAAAAACTTTGCTATTAGCGTAGACCTTT
TCGCCTTTCCATCCGCCATATTGAATTGTATGCAAAAATTATGGTAGCCA
AATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAACATATGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGATATCAAGGTGTTTGACGTTTTTGGGTGTGGGTGGGTGGG
TCAGCTTTTAAAACGTCAATTGACGTTCTTCTAACCTAGAATCGATTTGT
GACTGACCCCGCCCTAAGGAGGCGATTCTATCTTTGAAAAGGTGGTTTTT
TGTGGTTTGAAAATGGAATAACTTTGGAACTACTTAACCAATTTTAACAA
ATGACCCCTCATTTTCCTCACAAAGGTAAGGACTTTCAAATAAAATTAGT
TTGGTTTTCAAAATTTGAGGGGAAAATTTTGGCCTGACCACCCTATTTTA
GTTGTACGCCGAAGATCTTCGGCGTTAGTTACACGAAATCCATACTGGGT
AATGGGCCATTCCAGAAAATTTTTGTTACCCCCCATCGGACGACGTGCAT
TTTTAAATATTTTCTAGCCTCGGAAATAATTTTTTTTTTCAGTGGTGGTC
AGAAAGTTCGATAAAAATCCATGTACTTTTGCAAAATGCATTGGAATTCC
ACTCTTTTTGTCTGTTTTAATTGAATTGCCTTGGAAATTCATACATTTTC
TACTCTTGCCTTGGAAATTTTGAATTTTGGTGAAAACTTGTGCCCTCCGG
AAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGCCCC
AATCTTGTAGAAGAAAGATTAAATTTGCTTCTTTTTAAAACTAGAAATAA
TCAAATTCGCCCATCTCTTAGAACTAGCAGTAGCACTTCAAAAACCATAA
CATCACCCACGAAGGTACAAAAATAATCCTTATTCGGCTGACGGTAAATT
ATTCTCCTGGGAATAGAATCGCCAAACAATCAAATCAAAACATCGATCTG
AATGCGTGACGTCGAGTCATAATTACTGCTTTCAGTTTGCGTGTTTTGCG
TGTGTACTCCGTCTTCGTGGAATTTTTAATGGCATGAAAACAGAATATGC
TATGTCTTCAAGAACAAATTTCTAAAAGGCTTTTGTTGTTCGGTAAATAC
TTCTTTTTGGATTAAGAAATTCCATCTTTTATTGTTCTAATGATTATAAA
ATTTATTTATAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTTGC
ATATGTTTTGCATATTTTCCAACTAAATCCAACCACAGCTTTTTCGTTCC
TATATTTTTGCATACAATTCAAGATGGCAGATGGAAAGGCGAAAAGGTCT
ATAGTCGTTTGAAAGAACACGACGATCTTACTAATCACTCCAGAAGAATA
TTGGTAATTTCCAAAGCACTTTGAAAAATTGACTGGATTACAGAGTGTTT
TTTTTTACCTGAAAATTCCTGTTGTCCACCCCCTATATAAAATTTTTTTT
TGGCTTGAAATCTAAAATTAAAGTAAATCAGCCTGACTCTGAATCCAGTT
ATCTTGATTGATATAGGAGTTTTAGTCTATACTGTTTGTTATTCAATAGA
CTATTGTGTTCTCCCAAACCACAATTTCAAGGCCAGTAAATATCTCAAAA
CTATTGAAAATCTGTTCAAATTTTGATATTTTTTCATTTGATGTTATCAA
TAAAAATCTCATTGGTTGTAACTTGTATCCATTTTAGCAACAAGCCATTT
TAAGCTAATTTGGTTTGCAAAAAGTGCAAGTCTATAATTTAAACTAATAA
ACTGTCTGGAATCTGTGAGATCTTTGACTTGAGCAAAATAAATCTTCTCA
AAAATTTCAAAACTGCTTCTTTTTAGCAAGAAAAATAATCAGTAAAATTA
AATTTAAAAAAAGGCAAGCTTTACTTAATGTTTGTAAAGGTTCTTTGACA
AAAAACTTTCGAATTTTTTATCGGCATTGGGCCGATAAGCTTCAGACCCC
CTCCCCCTTGCTCTTATCAGCCAAAATTTTCGAAACCAATTTTTACATCT
TCGAAAACACAATTTTTTCCAATCATGTCCGCCATTGCGTTGGTCTTGCC
TTCCCACCTGTCTTCGTTGAGTTTTTATCTATTTGCACCAACATTAAGTT
TGTTCATACCCGCATTGATATTGTTAATCAAAACGAAAGTTAAAAAGACC
CGATGAAGTTGCAACATTTTGAAGGAAACGGCAGCACGCTGTCCAATTAA
AAAAAAGTTTTTTATCAAAGCTAATTCAAAACTGTATTTTTAAAGTTGCG
AATTTGTGCGCAAAGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTTGAG
TTTGTGGACGAAATCAGAAAGAAATTGGTAGTTAGACCCCCCCCCACCCC
CTTATCAGCCCAATACCGATAAAAAATTTGAAAGTTTTTTTTGAGGATCC
TTAAAACGTTGACCCAAATTTTATTGCAGTGATACTTTTCTGGAAATAAA
GGAAATGCTACCAGTCATTTTTCAGGCAAAAGCCCAATTATGGACTGAAA
AATCAAATATTTATGTTTTTGATTTACTTTGCCACATTTTCATTAGAAAT
AGAAAATCTAGCTAATTTTTTATATTCCTTCTCTAGTTGCAGTTTTCACC
AGCAGTCATTTCAAAGTTTAATAAGAAAGGGGTTATGAAAGCTGATTGCA
GAAATGCTGATGAGAGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGTTG
CAGGTGCAAAGCAGATTCCGTTCATCTCAACTAAATTTCTTTAATGCTGT
TATTACCATTATGAAAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCTGT
TTTGATAATCCCTCCACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAG
ATTGATTGCAGTAAACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTG
AAAGCAGTTTACAAGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAA
ATCCAAGCCGCCTTTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATT
TCCAAACCAGTCCAGTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTT
TTACTACACTGGGTAAATACTGCTATCTTTAAACCTAACTGCAAAGGCTG
TCATTTTGGAATAATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGC
TGAAAACATTGGGCACTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGG
CTTGGGCCAATCGACTGTAGCTCGAATTAAACGAATCAAAACTATTTTGG
CTTTCCCCAGGCCTTGCCTATTTAATTGATACTTAAAAACTACTCCCTAA
AAGTTAAAACTAGACACTTGATATGTATTTTTGAGAAGATAGATTTTACT
GCTTTATTTATCATTAACATTGAGAAAATTTTATGATTGAACTTTTAGAT
ACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACCGG
AATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACG
AGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTAGTTCATATGA
CCTTATTTTTGCTGTCCTATAAAAGTTTCTTTATTNTTGATAATCCCTCC
ACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTAAA
CTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACAAG
GTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCTTT
TGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCCAG
TTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGGTA
AATACTGCTATCTTTAAACCTAACTGCAAAGGCTGTCATTTGGGAATAAT
CGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTGGACA
CTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAATCGAC
TGTAGCTCGAATTAAACGAATCAAAACTATTTTGGCTTTCCTCAGGCCTT
GCCTATTTAATTGATACTTAAAAACTACTCCCTAAAAGTTAAAATTAGAC
ACTTGATATGTATTTTTGAGAAGATAGATTTTACTGCTTTATTTATCATT
AACATTGAGAAAATTTTATGATTAAACTTTTAGATACTTCAAGAAATATG
GAGATGTTGGAGACATTTACATCCCCAGAGACCGGAATACACAGGAGTCA
CGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGC
AATGGATGGCATGGATGGAAAGGTAGTTCATATGACCTTATTTTTGCTGT
GCTATAAAAGTTTCTTTATTAATATTATCGTTAGCGGATGCATTTCCCTC
GATTTCTATAAAACCAATCAGTGGAGAAGTGCGACTCTTCTTGTAATGGT
TGATGTACATTTCTAACTTCTGCTTTAAGGTCATTGATGGACGTGAAATT
CGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATATGATCCAAG
ACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCGAG
ACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTCGCAGAAGG
TGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATTTTAAGTGA
AGCCCTCTGAAGCATTTTTAAAAAACTAAAGCTTCATACGTTTGACAATC
ATTAATTATTGCTATTTGATGAATGTTTGAAAAACCACTTGACAGGAATT
TTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049702-exon-scaffold_165-1575043694:185366..185537 | TCONS_00049702-exon-scaffold_165-1575043694:185366..185537 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1575043694:181326..181801 | TCONS_00049702-exon-scaffold_165-1575043694:181326..181801 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1575043694:180851..180989 | TCONS_00049702-exon-scaffold_165-1575043694:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1575043694:179583..179908 | TCONS_00049702-exon-scaffold_165-1575043694:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1510915933:185366..185537 | TCONS_00049702-exon-scaffold_165-1510915933:185366..185537 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1510915933:181326..181801 | TCONS_00049702-exon-scaffold_165-1510915933:181326..181801 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1510915933:180851..180989 | TCONS_00049702-exon-scaffold_165-1510915933:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1510915933:179583..179908 | TCONS_00049702-exon-scaffold_165-1510915933:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1491911889:185366..185537 | TCONS_00049702-exon-scaffold_165-1491911889:185366..185537 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1491911889:181326..181801 | TCONS_00049702-exon-scaffold_165-1491911889:181326..181801 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1491911889:180851..180989 | TCONS_00049702-exon-scaffold_165-1491911889:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049702-exon-scaffold_165-1491911889:179583..179908 | TCONS_00049702-exon-scaffold_165-1491911889:179583..179908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:179583..185537 - |
Blast
BLAST of TCONS_00049702 vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4) HSP 1 Score: 106.686 bits (265), Expect = 1.158e-26 Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 2
Query: 653 FKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 850
F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct: 34 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99
The following BLAST results are available for this feature:
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