TCONS_00049698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049698
Unique NameTCONS_00049698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049698 ID=TCONS_00049698|Name=TCONS_00049698|organism=Clytia hemisphaerica|type=transcript|length=1396bp
ATCTCCAAGATGAAGAGGAAAATCAAACATTTCGATTTGGTTGTCTACGT
CAACTCAAAAGGGTCCTCGATATTCCTGGGACATCTCAAGCAGGTCAGAA
AAACGCGCCCATACAGGTGTTGCCCAACCACAACAACGATGTAGATGCGG
GTACACCCAACGGGGTGCTGCTGGATGACAACAACTTTGAGGTAGATGCG
GGCACACCAAACGTGATGCTGTCCGATGACAACAATGATGCGGGCACACA
TAACGATATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAGCTGTGGGCA
CACCTGGAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCTGACCTGTCG
CTGCCCAACGCCAACACCAAGGACTCAATGCTACGATCAATCATTGACCT
CCCGAGGTTGCCACTCATCTCCCCTCCTAGATTACAAAGTTATGAGGACA
ACCTAGAACAACAAGATACTCCACGACGGTCAACACGACAAAGAAAACCA
GCAAAGCATCTCACCTACAACAGTTTTGGCGAACCATCCCTCCAACCTGT
TTGTCCCCTCTACCAAAACCCCAAAGAAACAAATTGAGCTTATCGAAAGA
ATTGGGGATACGAACGACCTCTAAAATTTAAAGGGGTAGGAATAAGGAAT
AAAAAgagacattttaaaattttttgaaaagattctGCAGGAACTTGTAC
ATTTCCAGCCATAGTACTCATGGTTTTGCTGCATCTCACAATGTTTGTTT
GGTAGCGAGAAAAATTACTAATGCACCATTCTTCTCTTTTCATGTACTTC
CCCCTCCTACTGAGCTCGACATCAACAATCAACCCAGACGACGAATTAAA
ACGACTGCTCCGGTGAAGTGCCCCCTATATGTATCGACCTCTCGCTTGTG
CTGATGTTCAAGGATGATGATTGGGACGAATGAAAGGAGATTGGTTTAAT
ATTGTTGTGGTTAACAAGTTGAATGGTAATGTAAAATGTGTCATATATAA
TGTGTTTATACTCTTTTGGTTACTCAAGTGAGTTCATATAATATCATGTT
ATAGAATATATATTATGTTATTATGTTTTCCCTACCTTGCTGACTCATCT
GATAGTGTCTGGAGGAATGTAGCATTTGGAGTCAGCAAGGCCCCCCTGGT
TTCTGTTTGCCTTGTTTGCCCAACTGCACTGTTNGGATGAATGTAGCATT
TGGAGTCAGCAAGGCCCCCCCCTTGTTTCTGTTTGCCTTGTTTGCCCAAC
TGCACTGTCATGCTCTCTGCTCCAGTCCCCTTTTGCTATAAAGCCTTTGC
ATGCAGGCAGTTCCAGTTGGGCTAGAGTCAGTGCTACCTTGACTAGCAAA
ATAAAGTGAAGTTAAAGTGCTTCGTCTGATAAGCCTTTAACTAAAC
Run BLAST on NCBI

protein sequence of TCONS_00049698-protein

>TCONS_00049698-protein ID=TCONS_00049698-protein|Name=TCONS_00049698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
LQDEEENQTFRFGCLRQLKRVLDIPGTSQAGQKNAPIQVLPNHNNDVDAG
TPNGVLLDDNNFEVDAGTPNVMLSDDNNDAGTHNDIVLFDVKTEEEAVGT
PGEGQEETNEEASDLSLPNANTKDSMLRSIIDLPRLPLISPPRLQSYEDN
LEQQDTPRRSTRQRKPAKHLTYNSFGEPSLQPVCPLYQNPKETN
Run BLAST on NCBI

transcript from alignment at scaffold_165:56551..58141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049698 ID=TCONS_00049698|Name=TCONS_00049698|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_165:56551..58141- (Clytia hemisphaerica)
ATCTCCAAGATGAAGAGGAAAATCAAACATTTCGATTTGGTTGTCTACGT
CAACTCAAAAGGGTCCTCGATATTCCTGGGACATCTCAAGCAGGTCAGAA
AAACGCGCCCATACAGGTGTTGCCCAACCACAACAACGATGTAGATGCGG
GTACACCCAACGGGGTGCTGCTGGATGACAACAACTTTGAGGTAGATGCG
GACACACCAAGCGTGGTGCTGTCCGATGACAACAATGATGCGGGCACACA
TGACGATATTTAGCTGTCCGATGACAACACAGATGAGGAGGCTGCGGGTA
CACTGTCACAGGTGTTGCCCGATTACAACAATGATGTAGATACGGACACG
CCCACCGGGGTGCTGTTGGATGACAACAACTTTGAGGTAGATGCGGGCAC
ACCAAACGTGATGCTGTCCGATGACAACAATGATGCGGGCACACATAACG
ATATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAGCTGTGGGCACACCT
GGAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCTGACCTGTCGCTGCC
CAACGCCAACACCAAGGACTCAATGCTACGATCAATCATTGACCTCCCGA
GGTTGCCACTCATCTCCCCTCCTAGATTACAAAGTTATGAGGACAACCTA
GAACAACAAGATACTCCACGACGGTCAACACGACAAAGAAAACCAGCAAA
GCATCTCACCTACAACAGTTTTGGCGAACCATCCCTCCAACCTGTTTGTC
CCCTCTACCAAAACCCCAAAGAAACAAATTGAGCTTATCGAAAGAATTGG
GGATACGAACGACCTCTAAAATTTAAAGGGGTAGGAATAAGGAATAAAAA
GAGACATTTTAAAATTTTTTGAAAAGATTCTGCAGGAACTTGTACATTTC
CAGCCATAGTACTCATGGTTTTGCTGCATCTCACAATGTTTGTTTGGTAG
CGAGAAAAATTACTAATGCACCATTCTTCTCTTTTCATGTACTTCCCCCT
CCTACTGAGCTCGACATCAACAATCAACCCAGACGACGAATTAAAACGAC
TGCTCCGGTGAAGTGCCCCCTATATGTATCGACCTCTCGCTTGTGCTGAT
GTTCAAGGATGATGATTGGGACGAATGAAAGGAGATTGGTTTAATATTGT
TGTGGTTAACAAGTTGAATGGTAATGTAAAATGTGTCATATATAATGTGT
TTATACTCTTTTGGTTACTCAAGTGAGTTCATATAATATCATGTTATAGA
ATATATATTATGTTATTATGTTTTCCCTACCTTGCTGACTCATCTGATAG
TGTCTGGAGGAATGTAGCATTTGGAGTCAGCAAGGCCCCCCTGGTTTCTG
TTTGCCTTGTTTGCCCAACTGCACTGTTNGGATGAATGTAGCATTTGGAG
TCAGCAAGGCCCCCCCCTTGTTTCTGTTTGCCTTGTTTGCCCAACTGCAC
TGTCATGCTCTCTGCTCCAGTCCCCTTTTGCTATAAAGCCTTTGCATGCA
GGCAGTTCCAGTTGGGCTAGAGTCAGTGCTACCTTGACTAGCAAAATAAA
GTGAAGTTAAAGTGCTTCGTCTGATAAGCCTTTAACTAAAC

Coding sequence (CDS) from alignment at scaffold_165:56551..58141-

>TCONS_00049698 ID=TCONS_00049698|Name=TCONS_00049698|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_165:56551..58141- (Clytia hemisphaerica)
GTAGATGCGGGCACACCAAACGTGATGCTGTCCGATGACAACAATGATGC
GGGCACACATAACGATATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAG
CTGTGGGCACACCTGGAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCT
GACCTGTCGCTGCCCAACGCCAACACCAAGGACTCAATGCTACGATCAAT
CATTGACCTCCCGAGGTTGCCACTCATCTCCCCTCCTAGATTACAAAGTT
ATGAGGACAACCTAGAACAACAAGATACTCCACGACGGTCAACACGACAA
AGAAAACCAGCAAAGCATCTCACCTACAACAGTTTTGGCGAACCATCCCT
CCAACCTGTTTGTCCCCTCTACCAAAACCCCAAAGAAACAAATTGACTCC
AAGATGAAGAGGAAAATCAAACATTTCGATTTGGTTGTCTACGTCAACTC
AAAAGGGTCCTCGATATTCCTGGGACATCTCAAGCAGGTCAGAAAAACGC
GCCCATACAGGTGTTGCCCAACCACAACAACGATGTAGATGCGGGTACAC
CCAACGGGGTGCTGCTGGATGACAACAACTTTGAGGTAGATGCGGGCACA
CCAAACGTGATGCTGTCCGATGACAACAATGATGCGGGCACACATAACGA
TATTGTGCTGTTCGATGTCAAAACTGAAGAGGAAGCTGTGGGCACACCTG
GAGAGGGGCAGGAGGAAACCAATGAAGAAGCATCTGACCTGTCGCTGCCC
AACGCCAACACCAAGGACTCAATGCTACGATCAATCATTGACCTCCCGAG
GTTGCCACTCATCTCCCCTCCTAGATTACAAAGTTATGAGGACAACCTAG
AACAACAAGATACTCCACGACGGTCAACACGACAAAGAAAACCAGCAAAG
CATCTCACCTACAACAGTTTTGGCGAACCATCCCTCCAACCTGTTTGTCC
CCTCTACCAAAACCCCAAAGAAACAAATTGACTCCAAGATGAAGAGGAAA
ATCAAACATTTCGATTTGGTTGTCTACGTCAACTCAAAAGGGTCCTCGAT
ATTCCTGGGACATCTCAAGCAGGTCAGAAAAACGCGCCCATACAGGTGTT
GCCCAACCACAACAACGATGTAGATGCGGGTACACCCAACGGGGTGCTGC
TGGATGACAACAACTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031514XLOC_031514Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049698-proteinTCONS_00049698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049698-exon-scaffold_165-1575043694:57951..58141TCONS_00049698-exon-scaffold_165-1575043694:57951..58141Clytia hemisphaericaexon
TCONS_00049698-exon-scaffold_165-1575043694:56551..57755TCONS_00049698-exon-scaffold_165-1575043694:56551..57755Clytia hemisphaericaexon
TCONS_00049698-exon-scaffold_165-1510915933:57951..58141TCONS_00049698-exon-scaffold_165-1510915933:57951..58141Clytia hemisphaericaexon
TCONS_00049698-exon-scaffold_165-1510915933:56551..57755TCONS_00049698-exon-scaffold_165-1510915933:56551..57755Clytia hemisphaericaexon
TCONS_00049698-exon-scaffold_165-1491911889:57951..58141TCONS_00049698-exon-scaffold_165-1491911889:57951..58141Clytia hemisphaericaexon
TCONS_00049698-exon-scaffold_165-1491911889:56551..57755TCONS_00049698-exon-scaffold_165-1491911889:56551..57755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:56551..58141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08718	0.447715	0.517669	0.756369	0.270819	0.375677	0.305035	0	0	0	0.284712	0	0	0.474189	0.439284	0.174445	0.270973	0.601698	1.94817	0	0.570241	0.442039	0.517902	0	0.169518	0	0	0	0.468808	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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