|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049692 ID=TCONS_00049692|Name=TCONS_00049692|organism=Clytia hemisphaerica|type=transcript|length=713bp
aatgctgaaaataagaacattttaagaacatttttaggcttcaaatccaa
aaaactaagaacatccgaaggcttcaaaaatttttgacgctcttataaaa
aaaaagtgtaccatcttgaaattatgcatgcNTTGACAAGGTTGACCCTT
CTAAAGTAAACGTAGAAGCACATTTGATCAACGATCTTGGTTTGGACAGT
TTAGACGTCGTTGAAGTTGTCATGGCTTTCGAAGACGAATTTGGAATCGA
AATTTCTGACGAAGAAGCTGAAAAGATTTTCACCATTCGACAAGCTGTTG
AACTGATTGGAGCGAAAATGTGAAGATTCAAGACTTGATCGAGGTTTAGA
GAGGACGCAGACGTGTGACATGAACCGTCAAACCATTTGATTTGCCGAGA
CAAACGATTCTCAAGCCGCCATAATCATTTTATAGAATGTACTGTTTTAT
TTTTCGAAGGAAATAGAAATTATGTAAATATTACTCAATTTCTCAAACTT
TTGTTTTCCCGCTTTCTGATCTactttgactttttattttgagatAGTTT
GTGTATTGGAATGAATAATGGAGCCTTCTTCTCGGTTAGAAAGCCTGCAC
GAAGTAAAACAACAAGCGACCCAAATGtacccacagatatctgtaaagcc
cgaagggctagataggcaactttaagctttctccagcaaaaaaaagtgaa
gcaaaaatttgac Run BLAST on NCBI transcript from alignment at scaffold_165:255896..261425+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049692 ID=TCONS_00049692|Name=TCONS_00049692|organism=Clytia hemisphaerica|type=transcript|length=5530bp|location=Sequence derived from alignment at scaffold_165:255896..261425+ (Clytia hemisphaerica)
aatgctgaaaataagaacattttaagaacatttttaggcttcaaatccaa
aaaactaagaacatccgaaggcttcaaaaatttttgacgctcttataaaa
aaaaagtgtaccatcttgaaattatgcatgcNTTGACAAGGTTGACCCTT
CTAAAGTaagtttcttattttcattctatttgacttaagtttttgaaaga
ctttggaCCTAAGGACGCATTATTCTGATAAACAAACATTCCAATTTGAG
GATATATATAATGTTTCTATCTGGGGGGAGTGCAGGGGGGAGTCTTGGCT
TTATTCATCTCGTCTGCTCTTCTTTTCCCTTCTTTGTGTTGCTTTCTCTC
CATTTTCGTTAAATTGTTGGTGATGCTCAATTTTATGTACTTCTCGCGTC
AATTTATTTAACTTATCACGNcaacaggggttcacctgatttctaggtga
accaagctctataattttagaactttgtctggctgaggtaaaacttattt
tttctaaaattttaagcttggatatccaggctacccCCCCCTCTCTACGT
TAACGGCCATCAAAttctctaaagttaaaaaattgtcaaaaatcgatgaa
actctAAACNttgggaacgcgaaacacgaatgcgaactacccatgtctaa
acttttcaatatatctccagaactaacagattttttgaaattctgtaaaa
agctCTAAGTTcttgacagttacatcaaaatgcctcgaaaatgtcaatat
gaaaNctctccttcactttcatcgttgtttcgtcagccatctttaatatc
GCTACGGCTTcgctcagtttacattttaaaaataacggagataatttcta
aacttttttcccGAAAGTTGCgcgaattaattatctccgtaatcataatc
aaaagaatagcggcatttcaaagaaaaaagaccgatcgtctgcgaaattc
aagggccgcgCGGACCGTCTAAACAAATGGAACACGAGACATAAACATCC
CCCGAgggtcgtttgttttggttaaaattattctaaaaaatagcGAAGTG
AATACTTTAGGTATGCGACTTTTGCAGATCTTAGTtgataaaaggaggaa
aagaaatatggaaagtaacatttgtatggaataaacgtctcaaaaatcga
tattttctggtgaaaagaattgatatgtggtgagttgacccctaaagaga
tttttgaccttcccttaacggcacatggtcgaccccctccccccttaaca
gccaaatgccgttaaataattcgaaagtctaatgtcgacggcccctaaaa
agccaaaatcaaatcaaattgtgatttattttagatttttgtcgaaaatt
tttttaaattctcaattgtttttgtcaattttggagaacattttttgaac
atttttttatgtgaagaataaaaaacttgccccaaagtttcaattttggc
ttaaaatttttattttatgaaggggtgtaggggtatatttggtagttttc
tggatagtatattgtactatGTAAGGGGGGTGTTAGGGTATATTTGGCAG
TTTGCTTGATAGTATATTATTGTATTATACAACGGGTGTCAGGGTGTATT
TGGtagtttgctggatagtactggatagtatattgtaaaatataggGGAT
GTTGGGGTGTTTTTGGTAGTTTACTGGAtagtattttgtacattttgtac
tataggggtgggtgggtgtttaaaatcgaaatttgctacaaagtactgat
acatgcatcttttttgtacatggacccccccccctgccttgagcacaaaa
aatgcttttttaaacactttttttccaccgaaaaacaaataacttttaca
gacttaccttccccaaacattgaagaagcctctactaattaaagtaaatg
agatgagataagataaaaccttaaaatcaaccagacaCTTCAGTGTTTCA
ACctgtattccaacgaagccatattttggtttgtacagaaatttcacacg
ctcaaatcaaaaaaaacaaaatggtcaatctcactataAAAGCNGCCAca
gcatttccctggataaaaattctggtcacgtgaccatccgtgattttaga
ccaatgaaaacgcttcatttccccggattaaagttgtttctacactaaca
cgcgggaaatagttagaaaaagagagaaaaaacagggggtcaaattaaat
ttttctcccttcttgcagcaaacataaaagactaggccatttatttaaga
aaagggtgttatatcataaataaattatgtaagtaagtgatattctaagt
aacaaagttcattaacaattttattttgaagtttgtttttaaaaacaaaa
cccctgtGCTAGAtgatatttcattttcttaacttatggacccatttgga
agtatttgtaatacagatcatttggcagtgtagttgcagcctatacaaga
attggaatctaaagtctggagttgtaactccttgccagtgaccctgcaga
gaaatttttagttggcagacaaaaaaataaaagaaatgctGTAACTcgat
aaaaattagaaaaagctgtttctgatcctaaagtgctaNataaaaattag
aaaaagctggttttcgactgtttctgatcctaaagtgctattttttggta
aaatgctATTCAtatttggatttctagaaaacTTATCCATTCACTGTCAA
TAAATTTTTTACGTGAAAGTACttgcttcatggaataaaaagacaCATCT
TTTAgggtcatttttttttatttgccaaaattttgcgaattttgcaTTTC
CCATTTTTACCCTACATAAACGAGCATAAAATTACCACAGTAGATTGCAT
CCTACGCTTCAGGTGCTATTTTTACTTCCACTATTGTTCACCCGATTGCT
TAAAGCACTACTTTTAGTCTGTTATCtagggctttataaatctatggtca
cACCAGGGGGGTCATGCACTTGGTACCAGACATCATGATAACTAActgca
aaattgaaattttgagacCACCACCCTTTAGCAGTTAGTACCCCAAAGTA
CAAAGTGCATTTGACTACTGGTAGAGGTTGAGACCACCCCTATTTGCACC
TAGTGCCCCCCAGTACTAAGTGCATTTGACTATTGACACCCCTCTAGGTA
GCCCTGGGGTTGATATTATACTAACGTTGGTAATTTTTCTGTATTTGATT
TATGATAAATGCAAAGCCAAGCATATACGGTACAAAGCTATTATGCCTAA
CATATAAAGTCTTCCCAACATATTATTAGATCGAAAGCCCCAGCAATAAA
AAACGTCTTTTGCATTGTATGACAAACGACTGGGTGCAAGAGGgttaaga
agacattgcaatgctGATTaacttaataaaaaaaaaaagctagctGAGTC
TGAGCATAACACATTTCGCTAAATGCTCAGAGCGCGGCAGcccattttcc
ctttcctatcttttactttacctgtttttttttacttactgagacttagt
ttctcattctgactgagttttcatacctgtcaatcatttgtccattaATT
TCgacccaccacggtactaaccgtcatgatgtcttgtactaactcatgac
ccccccccccattgCGACCATTGTTTTAAAGAATTCAATTTCGAAATAAA
TATAATGTCATAATCTTCACGCTTTCCATTTTCAGTTTGTAGAAATATGT
TACCATCTTTCCTTAACCATAAAAACAGAGATGATGCATTTGTAaagacc
tttttgcctttccatcctCATCCTGTATTATTTGCTAAAAATGATGGCGA
ATTTGCCATGGTCAGATTTCGTAGGAAAATATGCATAACCTATACAAATA
GATGTCatatataaaacttacatgaaTAATGAAGAAagaatttgcttctc
ttgaaaactagaaataatgatATCctctcatctcttagaacaagcacatC
AGAAAACCATAACATTTTGTATATTACCAGTATAGACTCGAGCTGAAAAT
ACAACAGTGAAGGTGCAAGAGTGATCGTTATACTATGAGGCCCCTAGAAT
AAATATACTCAGAAGTAAATTGTATCTTTTGTCCCTCCCTTCCCCTTTTT
CCAAGGTTCTTTGCACATCGTTTAGCCTCTACCAGCTACAAAGCAAAATG
ATGCCTGCAGAATCCTAATCTTTTTTCTACCAACATTTTTATTTGTAGGT
AAACGTAGAAGCACATTTGATCAACGATCTTGGTTTGGACAGTTTAGACG
TCGTTGAAGTTGTCATGGCTTTCGAAGACGAATTTGGTAAGTTGTCATTG
CCTTGGCCCAAATACGAATCGAAAGACAGATTGATACACATTCATTTCTA
ATGACTATTAGGAGCGTCGGAAAAAATTTATCGGCATTTTGGGGCACAGA
TATTGTAATACATTGATTTCAGCCTTGGTCAGTCTTGGGTTTCATGATTC
TTAAAGCAATTAAAATTGTCATGTCTAATTGACATCCACTTTCCAAAGAT
TTAGCTGGTTTATCTGATtaaatttcaccatttttttatttatctacAGG
AATCGAAATTTCTGACGAAGAAGCTGAAAAGATTTTCACCATTCGACAAG
CTGTTGAACTGATTGGAGCGAAAATGTGAAGATTCAAGACTTGATCGAGG
TACTTTTTGTACTTTCCTactttttgtatgattttttttccttttatgaT
TTTACAAGTTTTCTGTCTGTATGATTCGTCTCTGGCCTTTGGCTTTACCT
TATTGGTCATGTCGGTACTTGTTTGTAAGTCATTTTATGATTCTATCAGG
AAAGTCAAAAAATCTGACACTCTTACTTATTTCGCTCTTCCAGAAAGttt
ttgtacatgggggtggaggatattggatattttgtccgggggtagtgaaa
aatctgcaaaatttgctttttttgggggcaaacttgctctgattaggggt
gattttgaatgtctgGGGGTGAGATCTGTTGTCCAGGGGTCcaaattcac
aatgtccggggagTAAATTTCCAAAGAATGTTATGTCCTTCACGGCCCCC
ATATTCAAACTCTTTCTGGAGGAGCCCATTACGCGACAGCCTGATAAATT
CTTAGGAATTAATTGTGCACCCATAGATTTCTCTATATGACTGATCACTT
CCTCTTTCAGGTTTAGAGAGGACGCAGACGTGTGACATGAACCGTCAAAC
CATTTGATTTGCCGAGACAAACGATTCTCAAGCCGCCATAATCATTTTAT
AGAATGTACTGTTTTATTTTTCGAAGGAAATAGAAATTATGTAAATATTA
CTCAATTTCTCAAACTTTTGTTTTCCCGCTTTCTGATCTactttgacttt
ttattttgagatAGTTTGTGTATTGGAATGAATAATGGAGCCTTCTTCTC
GGTTAGAAAGCCTGCACGAAGTAAAACAACAAGCGACCCAAATGtaccca
cagatatctgtaaagcccgaagggctagataggcaactttaagctttctc
cagcaaaaaaaagtgaagcaaaaatttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049692-exon-scaffold_165-1491911889:255896..256050 | TCONS_00049692-exon-scaffold_165-1491911889:255896..256050 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1510915933:255896..256050 | TCONS_00049692-exon-scaffold_165-1510915933:255896..256050 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1575043694:255896..256050 | TCONS_00049692-exon-scaffold_165-1575043694:255896..256050 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1491911889:260094..260181 | TCONS_00049692-exon-scaffold_165-1491911889:260094..260181 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1510915933:260094..260181 | TCONS_00049692-exon-scaffold_165-1510915933:260094..260181 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1575043694:260094..260181 | TCONS_00049692-exon-scaffold_165-1575043694:260094..260181 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1491911889:260445..260544 | TCONS_00049692-exon-scaffold_165-1491911889:260445..260544 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1510915933:260445..260544 | TCONS_00049692-exon-scaffold_165-1510915933:260445..260544 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1575043694:260445..260544 | TCONS_00049692-exon-scaffold_165-1575043694:260445..260544 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1491911889:261056..261425 | TCONS_00049692-exon-scaffold_165-1491911889:261056..261425 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1510915933:261056..261425 | TCONS_00049692-exon-scaffold_165-1510915933:261056..261425 | Clytia hemisphaerica | exon |
| TCONS_00049692-exon-scaffold_165-1575043694:261056..261425 | TCONS_00049692-exon-scaffold_165-1575043694:261056..261425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:255896..261425 + |
Blast
The following BLAST results are available for this feature:
|
