|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049691 ID=TCONS_00049691|Name=TCONS_00049691|organism=Clytia hemisphaerica|type=transcript|length=1100bp
AAAAAACCGGCCATATAAACTACGCCTAAGATTCAACGCATGTGAAAGAT
GTGTGTAAATGGGTGTgtaattgaaatttttaaatgcATTTCTCTCCCTA
AAATTCCATGCTTgtgaaatcaaaagaaaaatctacgggaagAGGACATC
tgtccgagttaaaaaatttcgagttatggagtagggtttataaggtattg
ttcATTGAAGGGACtttaaaacttgttcgagttatagaggttcgagttaa
agagactccactgtaaaaGCCATCCAACGGTCGCAATGTAACTTGGGATG
ATCAGGACTAATCGTGTTACTATAATAATTATTGTTCGAACGCAAAAACC
TCCAAAGTTATGGACCAATAGTCTTTGTTTGCGCATAGTGCTGACAACCT
GTGGAGCTTTAATTAACTGAAAATACTCTATGAGAGTGTGTCCCCTTAAA
AATTCATTTCGTTCGTTTAGCTTGCAGCGATTTCAAATAACGtttttctt
cttcgaaaaaATCATCATCCTTTTCCTTAGAGGAAACCCATTTACGCATC
GTACGATTGAACTCTACATTATTAGATATCAAATCCGGAGGAGGATTTTC
ATCGGCCATAAGTGGCGTTGAAGTTCCTTTAACGCTCTCTATGGCAGTGG
TTAAAATATCACTTGTTCTATTGCCGTATTGGGATTTGACTCCTCCGTTA
ACTGCAAGAGAATCAATACTGAAATCAAGTTCAGCATACGTTGTTGGTGG
AATGTAGACATTGTCTTTTGACTGTTGATCCAATGTTCGTTCATTTAGTA
AAACATACGTCATGTCTAAATTAGATGCTTTAGGCTGAGGTATGTAAGTC
GTATCTAGACTGGGTGGTTGTTTAAGTTGATGTGTGATCAGAGACTGAGG
AGTTTGTAGATAAGAAGGTTGGAGAGAGGATGATGGAGGATTATTGTTTT
GGTGATATGGTATCGTTGGTTGGTGTGGGTTCATTTGTGGTGGAAAATGT
TGCAGAGTTTGATTGTTCATTGAGTTGTATGGTAATTGTTGGATAGGTGT
ACTCTGGTAATGTTGGCTGACCAAACCTGAGagaaaatagtttaaaataT Run BLAST on NCBI transcript from alignment at scaffold_165:219883..221266+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049691 ID=TCONS_00049691|Name=TCONS_00049691|organism=Clytia hemisphaerica|type=transcript|length=1384bp|location=Sequence derived from alignment at scaffold_165:219883..221266+ (Clytia hemisphaerica)
AAAAAACCGGCCATATAAACTACGCCTAAGATTCAACGCATGTGAAAGAT
GTGTGTAAATGGGTGTgtaattgaaatttttaaatgcATTTCTCTCCCTA
AAATTCCATGCTTgtgaaatcaaaagaaaaatctacATTTCCTTTGTATG
TGTGGTTATCGTATACTACAACAAGTCTCTTATTCGAACACACAAAGGAT
ACGGCCACTTTAAGTTCAAACTTCTGTCAGACTACGTACggtttagacaa
aatttgacgtcaatcgtacTCTATTTGTGCTtcgcataaaagatgtcacg
gatccTAAGGATTGGTCCCCTACTATATTATCTCAAAAGATAAGCAGACT
TTAGTAGATACGAGAGGAAACGGGCGCTGTGTGTACATGTACAGTGGAGt
ctcataactcgaacacgcacgggaagAGGACATCtgtccgagttaaaaaa
tttcgagttatggagtagggtttataaggtattgttcATTGAAGGGACtt
taaaacttgttcgagttatagaggttcgagttaaagagactccactgtaa
aaGCCATCCAACGGTCGCAATGTAACTTGGGATGATCAGGACTAATCGTG
TTACTATAATAATTATTGTTCGAACGCAAAAACCTCCAAAGTTATGGACC
AATAGTCTTTGTTTGCGCATAGTGCTGACAACCTGTGGAGCTTTAATTAA
CTGAAAATACTCTATGAGAGTGTGTCCCCTTAAAAATTCATTTCGTTCGT
TTAGCTTGCAGCGATTTCAAATAACGtttttcttcttcgaaaaaATCATC
ATCCTTTTCCTTAGAGGAAACCCATTTACGCATCGTACGATTGAACTCTA
CATTATTAGATATCAAATCCGGAGGAGGATTTTCATCGGCCATAAGTGGC
GTTGAAGTTCCTTTAACGCTCTCTATGGCAGTGGTTAAAATATCACTTGT
TCTATTGCCGTATTGGGATTTGACTCCTCCGTTAACTGCAAGAGAATCAA
TACTGAAATCAAGTTCAGCATACGTTGTTGGTGGAATGTAGACATTGTCT
TTTGACTGTTGATCCAATGTTCGTTCATTTAGTAAAACATACGTCATGTC
TAAATTAGATGCTTTAGGCTGAGGTATGTAAGTCGTATCTAGACTGGGTG
GTTGTTTAAGTTGATGTGTGATCAGAGACTGAGGAGTTTGTAGATAAGAA
GGTTGGAGAGAGGATGATGGAGGATTATTGTTTTGGTGATATGGTATCGT
TGGTTGGTGTGGGTTCATTTGTGGTGGAAAATGTTGCAGAGTTTGATTGT
TCATTGAGTTGTATGGTAATTGTTGGATAGGTGTACTCTGGTAATGTTGG
CTGACCAAACCTGAGagaaaatagtttaaaataT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049691-exon-scaffold_165-1491911889:219883..220018 | TCONS_00049691-exon-scaffold_165-1491911889:219883..220018 | Clytia hemisphaerica | exon |
| TCONS_00049691-exon-scaffold_165-1510915933:219883..220018 | TCONS_00049691-exon-scaffold_165-1510915933:219883..220018 | Clytia hemisphaerica | exon |
| TCONS_00049691-exon-scaffold_165-1575043694:219883..220018 | TCONS_00049691-exon-scaffold_165-1575043694:219883..220018 | Clytia hemisphaerica | exon |
| TCONS_00049691-exon-scaffold_165-1491911889:220303..221266 | TCONS_00049691-exon-scaffold_165-1491911889:220303..221266 | Clytia hemisphaerica | exon |
| TCONS_00049691-exon-scaffold_165-1510915933:220303..221266 | TCONS_00049691-exon-scaffold_165-1510915933:220303..221266 | Clytia hemisphaerica | exon |
| TCONS_00049691-exon-scaffold_165-1575043694:220303..221266 | TCONS_00049691-exon-scaffold_165-1575043694:220303..221266 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:219883..221266 + |
Blast
The following BLAST results are available for this feature:
|
