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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049667 ID=TCONS_00049667|Name=TCONS_00049667|organism=Clytia hemisphaerica|type=transcript|length=2015bp
TGCAAATCCGACCGCGGAATAGATCTTATCTCGAATTCTATCTTCTCTTC
TCATTCCGGTCAAAGATTTTATTCCATTAGAGGTGACATCAACGAAAGAC
TGAACAAGAGAACCACTTTCTTCATTCACCTCGTTGTATAAACATTCTTC
TATGGCGAAATTATACTCTTCGAATACGGCAGTCGTGACTTCAACGCTTT
CTTCATCCTTTGGGGTATCAACCTTCTCTTTTATTTCGAGACCCGCACGA
AATCTCTCAAAGTAGGTCTTGAATGTCATCTCTTCCTTTTTACCACTGCA
GAAATACTTTACTCCATAAAAGGCTAAAACCACGGTTGTAGTCACAAGAC
CACCCAAAAGTGCGTATTTAGCCTCGAAGGCAACTGAGTTTGTTTCGATT
TTAGAGTATCTGTTTTTCACGTACTCTTTGAAATTTGCCTTTACGGGGTC
AATATTTATTGTTCCATCCGACATAGTGTTAAGAGGATCGGAATATTTTA
TACCATCCATGTCGAACTCAACACTGGGAGTTTCTTCTGCACTCAACGCG
AGCGCAATGTAATCAGGACAATGGTTTATGGTAGGTTCCCCCACACTGTA
CGTGGAATAAGATTTAAGCTTTTTCATGTAATCCCTGTTGGCATTGATCG
TATAGCCTCTAGCCCTTTTCCTCAGTTCATCGTCGGTATAAGTAGGACCA
GAAAACAAAGCATAAGAATGCTGAATCTGAGTAGGAGCATTGATTGTAAC
CAATCCATTAGCAAAACCTGTTCCCAGAGGATTTCCGACCTTGGTTCCGT
CGCCACAGACATTCCTGAATTTCACACAATGATCTGATTTCCCGCTGGCC
ACAGTAAGTATTGCGACATCATCAGGAAAATGTCGCTTATTCAAGATGAT
ATATGCCTTCCCATTTCTATCATGCACTGTCATTTTGTTTAATGACGCTA
TGTGGTTAGCAGTCACAATTGTAGTTGGGTTGATAAAAAAACCAGTCCCA
ACGGCATTGCTGTTCTTGTTCTCTCCTGAGATTCTTACAACTGCTTTCAA
CGCTTCACCCTTTTCGACATCCTCTATCTTGTAATGATCCAGCAAAGCTC
TCATATATTTTGCAGTCACGGCGAAACCGAGATTCTCTCCTCTAATGGCA
CCTGAAATGAGTCCGGCACATCTACCGTTGATAAAAATGGGACCTCTGGA
ATCCCCCGGACATATATTCCCAACAACTACACTGTGGGCCAAGGAAGAAA
ACTCAAATTCTCTAATTACTTTTCTCACTCTTTCTCTTCTCCATATAGGA
GGGACAAATGAATCGATGTATTGTTGTGCGGCCGGGTCTCCTCTATATGA
CAGTCTAGCCACTACACTGCTGGTCTTATTCATGAAATAACTTGAAACAG
ACATATTGGTGTAAATGTCTTGGTTTATGTCCCTCACTACATCTTCTTCA
TTTCTCAAAGCATTGGTCACAAATCTAGATGCCTTTAAATAGGCCTGATA
CTCATCAAGCAATCCAGTGCATTCATGAAAATCCGTTTCCACCACGTCAA
ATTCTCCACTTCTAATAACGTCAAGTTCGTTGGATACGATCCTCAGAATA
GGCCTGTCTGTCACAACATGTGAAGGTTTCAAAATGATGCCACAATACTC
CAGTCCGTAACCAACATGTACGCTGTCTTTGTACAATGCCACAATATCGC
AGTCGGCTATATCGTCAATTCCGAGGTCTGCCAAAACCGAATTCAATTCA
GAAGTGGGCACAATAACTGAAGTTTTGTTAGAACTCCTTGTTATCATACC
TTCAACGATAGTATACCCAGACATACCTTTTGGGAAAGGTAGTTGGTGGC
CTGAACAGAAATCAACATCCTCATAATCATCATCAACGTACACAAAATCT
TGATAGGTGAGATATTCAAGATTTACGCAAATAGCCAAATCCAATTCTGG
ATAAGACTGTATGATATTTGCCGGATCAGCATGTAAAGGTAATGCAAAGA
TTTCTCCGTACCTCA Run BLAST on NCBI protein sequence of TCONS_00049667-protein >TCONS_00049667-protein ID=TCONS_00049667-protein|Name=TCONS_00049667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp
RYGEIFALPLHADPANIIQSYPELDLAICVNLEYLTYQDFVYVDDDYEDV
DFCSGHQLPFPKGMSGYTIVEGMITRSSNKTSVIVPTSELNSVLADLGID
DIADCDIVALYKDSVHVGYGLEYCGIILKPSHVVTDRPILRIVSNELDVI
RSGEFDVVETDFHECTGLLDEYQAYLKASRFVTNALRNEEDVVRDINQDI
YTNMSVSSYFMNKTSSVVARLSYRGDPAAQQYIDSFVPPIWRRERVRKVI
REFEFSSLAHSVVVGNICPGDSRGPIFINGRCAGLISGAIRGENLGFAVT
AKYMRALLDHYKIEDVEKGEALKAVVRISGENKNSNAVGTGFFINPTTIV
TANHIASLNKMTVHDRNGKAYIILNKRHFPDDVAILTVASGKSDHCVKFR
NVCGDGTKVGNPLGTGFANGLVTINAPTQIQHSYALFSGPTYTDDELRKR
ARGYTINANRDYMKKLKSYSTYSVGEPTINHCPDYIALALSAEETPSVEF
DMDGIKYSDPLNTMSDGTINIDPVKANFKEYVKNRYSKIETNSVAFEAKY
ALLGGLVTTTVVLAFYGVKYFCSGKKEEMTFKTYFERFRAGLEIKEKVDT
PKDEESVEVTTAVFEEYNFAIEECLYNEVNEESGSLVQSFVDVTSNGIKS
LTGMRREDRIRDKIYSAVGFA Run BLAST on NCBI transcript from alignment at scaffold_164:86026..88040 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049667 ID=TCONS_00049667|Name=TCONS_00049667|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at scaffold_164:86026..88040 (Clytia hemisphaerica)
TGAGGTACGGAGAAATCTTTGCATTACCTTTACATGCTGATCCGGCAAAT
ATCATACAGTCTTATCCAGAATTGGATTTGGCTATTTGCGTAAATCTTGA
ATATCTCACCTATCAAGATTTTGTGTACGTTGATGATGATTATGAGGATG
TTGATTTCTGTTCAGGCCACCAACTACCTTTCCCAAAAGGTATGTCTGGG
TATACTATCGTTGAAGGTATGATAACAAGGAGTTCTAACAAAACTTCAGT
TATTGTGCCCACTTCTGAATTGAATTCGGTTTTGGCAGACCTCGGAATTG
ACGATATAGCCGACTGCGATATTGTGGCATTGTACAAAGACAGCGTACAT
GTTGGTTACGGACTGGAGTATTGTGGCATCATTTTGAAACCTTCACATGT
TGTGACAGACAGGCCTATTCTGAGGATCGTATCCAACGAACTTGACGTTA
TTAGAAGTGGAGAATTTGACGTGGTGGAAACGGATTTTCATGAATGCACT
GGATTGCTTGATGAGTATCAGGCCTATTTAAAGGCATCTAGATTTGTGAC
CAATGCTTTGAGAAATGAAGAAGATGTAGTGAGGGACATAAACCAAGACA
TTTACACCAATATGTCTGTTTCAAGTTATTTCATGAATAAGACCAGCAGT
GTAGTGGCTAGACTGTCATATAGAGGAGACCCGGCCGCACAACAATACAT
CGATTCATTTGTCCCTCCTATATGGAGAAGAGAAAGAGTGAGAAAAGTAA
TTAGAGAATTTGAGTTTTCTTCCTTGGCCCACAGTGTAGTTGTTGGGAAT
ATATGTCCGGGGGATTCCAGAGGTCCCATTTTTATCAACGGTAGATGTGC
CGGACTCATTTCAGGTGCCATTAGAGGAGAGAATCTCGGTTTCGCCGTGA
CTGCAAAATATATGAGAGCTTTGCTGGATCATTACAAGATAGAGGATGTC
GAAAAGGGTGAAGCGTTGAAAGCAGTTGTAAGAATCTCAGGAGAGAACAA
GAACAGCAATGCCGTTGGGACTGGTTTTTTTATCAACCCAACTACAATTG
TGACTGCTAACCACATAGCGTCATTAAACAAAATGACAGTGCATGATAGA
AATGGGAAGGCATATATCATCTTGAATAAGCGACATTTTCCTGATGATGT
CGCAATACTTACTGTGGCCAGCGGGAAATCAGATCATTGTGTGAAATTCA
GGAATGTCTGTGGCGACGGAACCAAGGTCGGAAATCCTCTGGGAACAGGT
TTTGCTAATGGATTGGTTACAATCAATGCTCCTACTCAGATTCAGCATTC
TTATGCTTTGTTTTCTGGTCCTACTTATACCGACGATGAACTGAGGAAAA
GGGCTAGAGGCTATACGATCAATGCCAACAGGGATTACATGAAAAAGCTT
AAATCTTATTCCACGTACAGTGTGGGGGAACCTACCATAAACCATTGTCC
TGATTACATTGCGCTCGCGTTGAGTGCAGAAGAAACTCCCAGTGTTGAGT
TCGACATGGATGGTATAAAATATTCCGATCCTCTTAACACTATGTCGGAT
GGAACAATAAATATTGACCCCGTAAAGGCAAATTTCAAAGAGTACGTGAA
AAACAGATACTCTAAAATCGAAACAAACTCAGTTGCCTTCGAGGCTAAAT
ACGCACTTTTGGGTGGTCTTGTGACTACAACCGTGGTTTTAGCCTTTTAT
GGAGTAAAGTATTTCTGCAGTGGTAAAAAGGAAGAGATGACATTCAAGAC
CTACTTTGAGAGATTTCGTGCGGGTCTCGAAATAAAAGAGAAGGTTGATA
CCCCAAAGGATGAAGAAAGCGTTGAAGTCACGACTGCCGTATTCGAAGAG
TATAATTTCGCCATAGAAGAATGTTTATACAACGAGGTGAATGAAGAAAG
TGGTTCTCTTGTTCAGTCTTTCGTTGATGTCACCTCTAATGGAATAAAAT
CTTTGACCGGAATGAGAAGAGAAGATAGAATTCGAGATAAGATCTATTCC
GCGGTCGGATTTGCA Coding sequence (CDS) from alignment at scaffold_164:86026..88040 >TCONS_00049667 ID=TCONS_00049667|Name=TCONS_00049667|organism=Clytia hemisphaerica|type=CDS|length=2013bp|location=Sequence derived from alignment at scaffold_164:86026..88040 (Clytia hemisphaerica)
AGGTACGGAGAAATCTTTGCATTACCTTTACATGCTGATCCGGCAAATAT
CATACAGTCTTATCCAGAATTGGATTTGGCTATTTGCGTAAATCTTGAAT
ATCTCACCTATCAAGATTTTGTGTACGTTGATGATGATTATGAGGATGTT
GATTTCTGTTCAGGCCACCAACTACCTTTCCCAAAAGGTATGTCTGGGTA
TACTATCGTTGAAGGTATGATAACAAGGAGTTCTAACAAAACTTCAGTTA
TTGTGCCCACTTCTGAATTGAATTCGGTTTTGGCAGACCTCGGAATTGAC
GATATAGCCGACTGCGATATTGTGGCATTGTACAAAGACAGCGTACATGT
TGGTTACGGACTGGAGTATTGTGGCATCATTTTGAAACCTTCACATGTTG
TGACAGACAGGCCTATTCTGAGGATCGTATCCAACGAACTTGACGTTATT
AGAAGTGGAGAATTTGACGTGGTGGAAACGGATTTTCATGAATGCACTGG
ATTGCTTGATGAGTATCAGGCCTATTTAAAGGCATCTAGATTTGTGACCA
ATGCTTTGAGAAATGAAGAAGATGTAGTGAGGGACATAAACCAAGACATT
TACACCAATATGTCTGTTTCAAGTTATTTCATGAATAAGACCAGCAGTGT
AGTGGCTAGACTGTCATATAGAGGAGACCCGGCCGCACAACAATACATCG
ATTCATTTGTCCCTCCTATATGGAGAAGAGAAAGAGTGAGAAAAGTAATT
AGAGAATTTGAGTTTTCTTCCTTGGCCCACAGTGTAGTTGTTGGGAATAT
ATGTCCGGGGGATTCCAGAGGTCCCATTTTTATCAACGGTAGATGTGCCG
GACTCATTTCAGGTGCCATTAGAGGAGAGAATCTCGGTTTCGCCGTGACT
GCAAAATATATGAGAGCTTTGCTGGATCATTACAAGATAGAGGATGTCGA
AAAGGGTGAAGCGTTGAAAGCAGTTGTAAGAATCTCAGGAGAGAACAAGA
ACAGCAATGCCGTTGGGACTGGTTTTTTTATCAACCCAACTACAATTGTG
ACTGCTAACCACATAGCGTCATTAAACAAAATGACAGTGCATGATAGAAA
TGGGAAGGCATATATCATCTTGAATAAGCGACATTTTCCTGATGATGTCG
CAATACTTACTGTGGCCAGCGGGAAATCAGATCATTGTGTGAAATTCAGG
AATGTCTGTGGCGACGGAACCAAGGTCGGAAATCCTCTGGGAACAGGTTT
TGCTAATGGATTGGTTACAATCAATGCTCCTACTCAGATTCAGCATTCTT
ATGCTTTGTTTTCTGGTCCTACTTATACCGACGATGAACTGAGGAAAAGG
GCTAGAGGCTATACGATCAATGCCAACAGGGATTACATGAAAAAGCTTAA
ATCTTATTCCACGTACAGTGTGGGGGAACCTACCATAAACCATTGTCCTG
ATTACATTGCGCTCGCGTTGAGTGCAGAAGAAACTCCCAGTGTTGAGTTC
GACATGGATGGTATAAAATATTCCGATCCTCTTAACACTATGTCGGATGG
AACAATAAATATTGACCCCGTAAAGGCAAATTTCAAAGAGTACGTGAAAA
ACAGATACTCTAAAATCGAAACAAACTCAGTTGCCTTCGAGGCTAAATAC
GCACTTTTGGGTGGTCTTGTGACTACAACCGTGGTTTTAGCCTTTTATGG
AGTAAAGTATTTCTGCAGTGGTAAAAAGGAAGAGATGACATTCAAGACCT
ACTTTGAGAGATTTCGTGCGGGTCTCGAAATAAAAGAGAAGGTTGATACC
CCAAAGGATGAAGAAAGCGTTGAAGTCACGACTGCCGTATTCGAAGAGTA
TAATTTCGCCATAGAAGAATGTTTATACAACGAGGTGAATGAAGAAAGTG
GTTCTCTTGTTCAGTCTTTCGTTGATGTCACCTCTAATGGAATAAAATCT
TTGACCGGAATGAGAAGAGAAGATAGAATTCGAGATAAGATCTATTCCGC
GGTCGGATTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049667-exon-scaffold_164-1491911889:86026..88040 | TCONS_00049667-exon-scaffold_164-1491911889:86026..88040 | Clytia hemisphaerica | exon |
| TCONS_00049667-exon-scaffold_164-1510915933:86026..88040 | TCONS_00049667-exon-scaffold_164-1510915933:86026..88040 | Clytia hemisphaerica | exon |
| TCONS_00049667-exon-scaffold_164-1575043694:86026..88040 | TCONS_00049667-exon-scaffold_164-1575043694:86026..88040 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_164 | supercontig | scaffold_164:86026..88040 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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