TCONS_00049647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049647
Unique NameTCONS_00049647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049647 ID=TCONS_00049647|Name=TCONS_00049647|organism=Clytia hemisphaerica|type=transcript|length=515bp
GATATTCCCGCTGGCATCAAACCATTGTTTTCACCTGAAGACTGCCTGAA
GATACAAACAAGTATGAATAACCCAGTAgttaaacaaaaacaacaatatT
CGCTTACTACAAGACTGCCAGATCAAaattcacaggaaaaaatctttttt
gaagTAGAAGAAACAATGACAAAGGTTTCAACAAAGGAACTGCCAAAGCG
TCCAACACCTGAAGTCAACGATAACTCACCCGAGTACTTAACATTGAAAC
CATTAAAGAGATGTTCAAACTGCCAATCAGTTGAAGATCGCCTGGAAGAA
GCAAAAGCCTTAATCGAAAAGCAAAGGTCAAAGTTGGAATTATTCGAAAC
CCTTGTTAAAGATCTTGTGATGGTGACAGATTCTTTCAAGTCATCAGTTG
AAGATACCAGCTGTGGAACCAATTATGTACCAGAAACAGGCTCACACGGA
AGATGTGAAGATCACTTGGTTGGTGTAAAAAAGGTGAACACcacacacac
aaaaaacaagGAACT
Run BLAST on NCBI

transcript from alignment at scaffold_164:104931..107149-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049647 ID=TCONS_00049647|Name=TCONS_00049647|organism=Clytia hemisphaerica|type=transcript|length=2219bp|location=Sequence derived from alignment at scaffold_164:104931..107149- (Clytia hemisphaerica)
GATATTCCCGCTGGCATCAAACCATTGTTTTCACCTGAAGACTGCCTGAA
GATACAAACAAGTATGAATAACCCAGTAGTTAAACAAAAACAACAATATT
CGCTTACTACAAGACTGCCAGATCAAAATTCACAGGAAAAAATCTTTTTT
GAAGGTATACAATAATTTTGTTAATACATATTCTCAAAATAGAAAAACGT
AATATTCAATTACAAATAATGAAAAGTTGCAAAGATTGAGATTGAATTCA
TTTCCTTATAATTTCAGTAGAAGAAACAATGACAAAGGTTTCAACAAAGG
AACTGCCAAAGCGTCCAACACCTGAAGTCAACGATAACTCACCCGAGTAC
TTAACATTGAAACCATGTAGGTCACAAATGTCTCATCAGTTTGTTTTATT
AAAAATGATTAACTTGTACCGAGATTTAAAATTGTTCAAATGTTCAAACT
GGTTGTGTTTTGGTGCAGCAGATTGAACAACAGATTATTATCATCATATA
CTTATTTGTTTCCTAATGCTTAGCGTTTTTTGTCAACAAACAACTTCCAA
TTATTATTAATAGTAAAGAGATGTTCAAACTGCCAATCAGTTGAAGATCG
CCTGGAAGAAGCAAAAGCCTTAATCGAAAAGCAAAGTAAGGAATTCATTT
CAAAAAACTTCTGTTACCTTATTGATATTATGTTATATATGTGCTTAGTT
TCCTGATTTTTTAAGTCAAATTTTGCGAAATTTAACACCGTTCAAATTTT
TCTAAAATACAAAATCGCAAAATTAAACCTGCACTAGAAGACATAGTGGC
CTCTACTATCTGTTTGCATCCTCTCAGATAAAAAAAAAGAGATTGGAATC
TGAATGTAGGCGTCAATCAAATATTAGTTTAAAAATTTTCTTTTACCTTT
TCAGGGTCAAAGTTGGAATTATTCGAAACCCTTGTTAAAGATCTTGTGAT
GGTGACAGATTCTTTCAAGTCATCAGTTGAAGATACCAGCTGTGGAACCA
ATGTGAGTTCACTAAAAATTATATTTAAATAATTATGATCTTTTAATTAA
GCAAAATAACTATTTGAAACATTTGTCATGGGAAATTGATCCAGTGTAAA
TTATTTTCAAACAATAGTATGTACCAGAAACAGGCTCACACGGAAGATGT
GAAGATCACTTGGTTGGTGTAAAAAAGGTGAACACCACACACACAAAAAA
CAAGGTTTGAATATTTTCAACACTAATTTAAAACATTTTGTACATTCTAA
AATAAATTTTGTATTAATTAATGTAGGGAAACTCTGATGATCTTCCTGCA
AATAGCACCTCTCATTTGTGAAATCTACAAGCACTTACTAAAATTTATAC
GGCTGGTATCATTTTGTTCTTATTTGAATGCCTTTTAGGAACTACCAGCA
ACACCTCGATCTTCCGTGTTNTCAAACTGCCAATCAGTTGAAGATCGCCT
GGAAGAAGCAAAAGCCTTAATCGAAAAGCAAAGTAAGGAATTCATTTCAA
AAAACTTCTGTTATCTTATTGATATTATGTTATATAATGTGCTTAGTTTC
CTGATTTTTTAAATCAAATTTTTCTAAAATACAAAATCGCAAAATTAAAC
CTGCACACGAGAAGACATAGTGGCCTCTACTATCTGTTTGCATCACTCTC
AGAATAAAAAAAAAGAGATTGGAATCTGAATGTAGGTGTCAAACAAATAT
TAGTTTAAAAATTTTCTTTTACCTTTTCAGGGTCAAAGTTGGAATTATTC
GAAACCCTTGTTAAAGATCTTGTGATGGTGACAGATTCTTTCAAGTCATC
AGTTGAAGATACCAGCTGTGGAACCAATGTGAGTTCACTAAAAATTATAT
TTAAATAATTATGATCTTTTAATTAAGCAAAATAACTATTTGAAACATTT
GTCATGGGAAATTGATCCAGTGTAAATTATTTTCAAACAATAGTATGTAC
CAGAAACAGGCTCACACGGAAGATGTGAAGATCACTTGGTTGGTGTAAAA
AAGGTGAACACCACACACACAAAAAACAAGGTTTGAATATTTTCAACACT
AATTTAAAACATTTTGTACATTCTAAAATAAATTTTGTATTAATTAATGT
AGGGAAACTCTGATGATCTTCCTGCAAATAGCACCTCTCATTTGTGAAAT
CTACAAGCACTTACTAAAATTTATACGGCTGGTATCATTTTGTTCTTATT
TGAATGCCTTTTAGGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031481XLOC_031481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049647-exon-scaffold_164-1575043694:106996..107149TCONS_00049647-exon-scaffold_164-1575043694:106996..107149Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1575043694:106784..106882TCONS_00049647-exon-scaffold_164-1575043694:106784..106882Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1575043694:106515..106586TCONS_00049647-exon-scaffold_164-1575043694:106515..106586Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1575043694:106148..106245TCONS_00049647-exon-scaffold_164-1575043694:106148..106245Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1575043694:105946..106032TCONS_00049647-exon-scaffold_164-1575043694:105946..106032Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1575043694:104931..104935TCONS_00049647-exon-scaffold_164-1575043694:104931..104935Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:106996..107149TCONS_00049647-exon-scaffold_164-1510915933:106996..107149Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:106784..106882TCONS_00049647-exon-scaffold_164-1510915933:106784..106882Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:106515..106586TCONS_00049647-exon-scaffold_164-1510915933:106515..106586Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:106148..106245TCONS_00049647-exon-scaffold_164-1510915933:106148..106245Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:105946..106032TCONS_00049647-exon-scaffold_164-1510915933:105946..106032Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1510915933:104931..104935TCONS_00049647-exon-scaffold_164-1510915933:104931..104935Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:106996..107149TCONS_00049647-exon-scaffold_164-1491911889:106996..107149Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:106784..106882TCONS_00049647-exon-scaffold_164-1491911889:106784..106882Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:106515..106586TCONS_00049647-exon-scaffold_164-1491911889:106515..106586Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:106148..106245TCONS_00049647-exon-scaffold_164-1491911889:106148..106245Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:105946..106032TCONS_00049647-exon-scaffold_164-1491911889:105946..106032Clytia hemisphaericaexon
TCONS_00049647-exon-scaffold_164-1491911889:104931..104935TCONS_00049647-exon-scaffold_164-1491911889:104931..104935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_164supercontigscaffold_164:104931..107149 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.131274	0.124288	6.77969e-07	3.54238e-06	0.963818	1.09628	1.4942	1.90292	1.49488	2.20474	1.12133	1.06968	0.0678562	1.21322	0.210757	0.289709	0	0.752835	0.503787	0.287811	0.283594	0.250296	0.0151579	0	0	0.80308	0.416359	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top