TCONS_00049622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049622
Unique NameTCONS_00049622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049622 ID=TCONS_00049622|Name=TCONS_00049622|organism=Clytia hemisphaerica|type=transcript|length=905bp
aagaaattctcaaAATGGGCGTTTCACATTATTAGTACCTACATGCACTT
CTTTTGAAAGAAGCTGTGTGAAATGATGGGTCATCTTAAAGAGTTGTGGA
CAGTTCTTAGCTTGgctgccattttgttttcagTGCGATCAATCACAACA
ATGAATtataaaattacaaaagaatGGAACGACAAATCGGCCAATCATAA
TCCAGCATCTATTTCACTGTCATGGCAATCAGGGAATGATTACGTCACCG
CTATCTTTGAGGCGCCATTTTTCGACGACCCTGCAGCGCCAAAGGGAGAA
GTTGGGAGACCGTTCCCGAAACTCTGGGATTACGAAGtGGTAGAGATTTT
CTTCTTATCTTCAAAAAGTCAAGAATATTTGGAAGTTGAAGTTTCACCAC
ATGGTCAGCATCTTTTGTTGCTCCTCAAAGGCGTCCGCAACATGATCGAG
GACGAACTTCCAATGAACTACACAGCTTCCATCGACCTTAACAACAAAAC
GTGGAAAGGTCACGCGCACATCCCGCTCGCATATTTCCCGCGAAGTGTGG
ACCGAATGAATGCGTACGCCATCCACGGTTCGAATGAAAAGCGTGTATAC
GAAGCGCTCTATCCAACGCCAGAAGGGAAATTCCCTCAACCTGATTTCCA
TCGATTGGAATATTTCGAAGATTTCGATTTATGGAAGATCGTTACTGATA
GCTCGGTTACTATTGGTAACTACTGGAACCAATTCCCAAAGacgtgaaaa
aagttttttttgtacttcattattttcatatttgaaaatatatcaGCACG
CATGCTCGTTCAAAGCTTTAATGACTCATCTTCGTATCAACATCAATCTA
CTTGACTACCTACAGAATGAGAAATTCTTCTAAATTTGAGCAAGTGAATT
AATCC
Run BLAST on NCBI

transcript from alignment at scaffold_162:39808..45007-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049622 ID=TCONS_00049622|Name=TCONS_00049622|organism=Clytia hemisphaerica|type=transcript|length=5200bp|location=Sequence derived from alignment at scaffold_162:39808..45007- (Clytia hemisphaerica)
AAGAAATTCTCAAAATGGGCGTTTCACATTATTAGTACCTACATGCACTT
CTGTAAGATCTTTTTTTGTACATTTAAATTATTCTAGTTTTTAACTTTAT
AACGATTTTTCATATTTTACAAACGGTACAATATACATAGTTTAGAAATG
AAATCAAATTGTATGATATTCAGTTTTCTTGCTAAATTCAATATAAATTT
ATGAGGTACGTTTCTTTCGTTGGCTTTTTCATGTATGTTTCCTTGTTTTG
ATGTTTTTTGAAACCGCATACTTGTCCAATGAGATCGTGAATCTTTTTTA
GTCTGTGAAACAATTTTTTTGATTTCAAGAACAATATTTGTGCAGCCTGT
CTTTTGTTTGACGAACGAAAAAATGATTTTGATCATATTTTCTATACCCT
CTATTCTTTTCCGTCAGTTTGAAAGAAGCTGTGTGAAATGATGGGTCATC
TTAAAGAGTTGTGGACAGTTCTTAGCTTGGCTGCCATTTTGTTTTCAGTG
CGATCAATCACAACAATGAATTATAAAATTACAAAAGAATGGAACGACAA
ATCGGCCAATCATAATCCAGCATCTATTTCACTGTCATGGCAATCAGGGA
ATGATTACGTCACCGCTATCTTTGAGGCGCCATTTTTCGACGACCCTGCA
GCGCCAAAGGGAGAAGTTGGGAGACCGTTCCCGAAACTCTGGGATTACGA
AGGTGATTATTTACTTTAGCAATACGAAGGTTATCCGCTTTTAATGACAG
ATTTTTGGCGTAATAAAGTGCACTTTAAATTCTCTATTTTTGATGACGTG
AAATCAGCAACTTTCAACAACTCATTCTTGGCTACTTAATTCGTGAAATC
AAAACTACGCGAATTCGCGAAAATTAATCTTGTTTAAGTGTGAAATTCTG
GTTTTATTATTTCTGTCTTTCTCTCACTCGAGATGGGAAAGTGTGATTTG
TGCTGAAACATCTTCTGAAAGATATTTCTGACTTTCTTTTTTTCTTTTGT
TCAGTGGTAGAGATTTTCTTCTTATCTTCAAAAAGTCAAGAATATTTGGA
AGTTGAAGTTTCACCGTAAGATTTTCCTTCTTTCATTTGAACCCTAACTA
CACTGAGAATAAAGTTTCGGATGTTTAAGAAGATAAAACACTTTGTGCTG
ATCAATACTGCTTCGTGCAATCTTATGCAAGATCACTCAAACTTCTTCAG
NCGTGCACCTGTCAAATCTTATGCAAGGTCACTCAAACTTCTTCAGAGAT
TCTTAACCTGTGCAAAACAATTTTTCGCTCAAGCTAGGATGATCTTCTCT
TGTTTAATTGAACACACCCCTGTCTCTGTTGTGGGCTGGGATACAACGAA
GGAGTTGAATACCAATCTATCAAAACATATTTTGCTTGGGTGGAAACTTT
CAATTTAGCTCATAAACCTCATTCAAATATTATGTTTCTTTTACAGACAT
GGTCAGCATCTTTTGTTGCTCCTCAAAGGCGTCCGCAACATGATCGAGGT
TGGTGGCAATTTGTTCGCATTTCTTTCTATGTAGTAGAAGAGACATACGA
GACTCCCTTGGATGAAACCTTGATTTCTGAACACGACCTGTTTGTTTACT
GTTAATTTGATGCAATCGATTTGATTGTGATTATTCCGGTCTTTTCTCTA
TTAAACTCTAACAGTTTTCTGTTACATTGTTGGCGAGAGAGCCAGATTGT
ACCTACACCCTTCTCAAAATGTTATAATGTTTTCATCTCTGAATAGTCTT
TTATCTCTTGAGAGAATCGCCAAAAGTCGCTACACGTAAAATAATTCTCG
AGTAACCCGTGACACGCTTTTTTTATAAGAATAGTGTACTTTGAATGAGG
ATCAAGTATTCTTAAGAAATTGTTAAAATTGAGGGTGAAATATTCTTAAC
GTATTCTTACTTTTTTAGACTTGACTTTTTTACAAACATGAGAACTGATC
AATTTGAGAGTTTTGGACTTTTGAGTGAACCTTTGGAACTAAGATTAAAT
TTCTGCCTCAAAGTTTAAATTCAAGTCTAACAAAGGAAGCAGTTTTTTTC
TGTTGACCAAATACAAAATGTATTCTTATCAAATTCTGTGAAACTCACCC
TAGAGGGTATTCTTAGGGTATTCTTACAATTTGGCCAATTTTCACCCTGA
TATTCTTATAGAAGATATTCTTATTTTAAAAAAGCGTGTACCTAAGCCTG
GTACTTAAGCCATGCTTAAAGTTGTAAATATTGGATTCACCAAATGGATT
TTTTGTGGCCAGGTTTCTGGGCTTATTGAAGTCAAAAGAACTACCATGAT
ATTTAAATCTTCTTCTCTTAACAGGACGAACTTCCAATGAACTACACAGC
TTCCATCGACCTTAACAACAAAACGTGGAAAGGTCACGCGCACATCCCGC
TCGCATATTTCCCGCGAAGTGTGGACCGAATGAATGCGTACGCCATCCAC
GGTTCGAATGAAAAGCGTGTATACGAAGCGCTCTATCCAACGCCAGAAGG
GAAATTCCCTCAACCTGATTTGTAAGTATTTTTACCTTTGAAACTACACC
CTTGTTGCGTTTCATCCCATACTCTCACAACACCCCTGTCTCGTGTTAAT
GACTACCATGTTACTTCGAATAAACGCCTCTCCTAAAATCCGAAAAATTA
ATAAACGCCCGGGGTGCTTATTCGAAGTAATACAGTACTTTAATCGTAGA
AATTTTAGCGAGACTAATTTTAGCGTTTTAGCGAGTTTTCCCTATTTTCG
CTAAAATATAAATCTCGCTAAAACGCGCCGAATTGACAGATGGTTAAAAT
TTATCCGCAAGAAATTTTTCGAAAAGCTGATTCGCTAAAATAAATCCAGT
ATGTTTTTTCTTTCATTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTA
TAAATTCACCTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTTCGTTAC
CAGCTTTTCTCGAGATTGAATCATAGGAATCATTTGATTTTTGGTACAAA
GGTGCAAAACGGTAGTGGCCAAAATGTGACGAAGCCCGATTTTCGAAAAA
AAATTTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTT
TTGGACTTTGTGAAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCAT
GAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAA
TGTTCTTAGTCAAATTACTCAATTTCTTCATGAGATAGATGTTTTTTTTG
CTCATGAGGGCTTACTTTTGAAGAATATGTGTGATTAGACATGAAATTTT
GGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAGTTCAAATTTTTTT
TATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCT
CTTTCATTCTTTAAGACTTTTTGCACAAAGATGCATAACTATAAACCCTC
GAATGTGACGGAGCCCAATTTTCGAAAAAAAATATGTTTTTGGGCAAATT
GGGGCCAAAAAACGGCTAAAAAGCGGGTTTTTTGGACTTTGTGAAAAATT
GGATCATTGATTTTTTCTGATTTTTTGCATGGAAGTAGGGTACCATCATA
GGTAAAAGATGGCTCAGGGAGATTTTTGCAAAAAAAATTTGTTGGCTCAA
AAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATTAACG
TTCTTAGTCAAATTACTCAATTTTTTATGAGATAGATGTTTTTTTTGCTC
ACGGGGGCTTACTTTTGAAGCATATATGTGTTTAGACATGAAATTTTGGT
TGCTTGGCGTGTTTTTACAGAAAAACTGGCCAAATTCTATATTTTTTTAT
AAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTT
TCATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAA
TGTGACTGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTGGGA
CAAAAAACGGCTAAAAAAAGGGTTTTTTGGACAATGTGAAATATTGGATC
GTTTTTTTTTTTGATTTTTTGCATGATAGTAGGTAAAAGATGGGTTTAGC
AGATTTTTGTAAAAAAACTTTTCAGCTCAAAAAACGCATCTTTATCTATA
AGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAATTACTCAA
TTTTTTGATGAGATAGATGTCTTTTTATGCTCACAAAGTCTTGAATATGA
AAGAATATTTCAAGAGCATGAAATTTCGGTTTCTAAACTTTTTTTTTATA
AGAAACAAACGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATG
ATTGTTTAACGTTCATGCTCACGTAGATATCAATTATATATGTGTTAAAT
GCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATCATTTTGTTATC
ATTTTCATAATTTTTTCAAAAACTACCTAGTAATGGGGGCGTAAATTTCC
AAGTTTTTCTGTTCTTAGTCAAGAATTGTGTTACAAAGACTATATTGATT
TTTGAATTAAAAAACATTATTTTTTTCTTCGAAATCATTGCCCTCGCTAA
AATTAATCCACGCGAAATTTTTGTCAGACGAGTATTCGCTAAAATTTATC
CACGCGAAATTTTTTGAAATCGTGATTCGCTAAAATAAATCCAAAAAAAT
CAAGATTTTCCTGATTCGCTAATATACGCTAAAATTAATCTCGCTAAAAT
TTCTACGATTAAAGTAGTTGATAGGTAGGATACTCAAAATTTCAAATTTG
AACATGAAACCAAGAGTGGTAGTCAACATTAATTTTTTAGCTAATAACTT
TGTTTTGGCGTTACATTTTACCTATATATAGTGATTTGAGTCATGAAGAA
CAGTCAGTAATCCTGACTCCTTTTCTTATTTATCACTTTCAGCCATCGAT
TGGAATATTTCGAAGATTTCGATTTATGGAAGATCGTTACTGATAGCTCG
GTTACTATTGGTAACTACTGGAACCAATTCCCAAAGACGTGAAAAAAGTT
TTTTTTGTACTTCATTATTTTCATATTTGAAAATATATCAGCACGCATGC
TCGTTCAAAGCTTTAATGACTCATCTTCGTATCAACATCAATCTACTTGA
CTACCTACAGAATGAGAAATTCTTCTAAATTTGAGCAAGTGAATTAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031462XLOC_031462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049622-exon-scaffold_162-1575043694:44956..45007TCONS_00049622-exon-scaffold_162-1575043694:44956..45007Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1575043694:44306..44590TCONS_00049622-exon-scaffold_162-1575043694:44306..44590Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1575043694:43943..44003TCONS_00049622-exon-scaffold_162-1575043694:43943..44003Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1575043694:43510..43561TCONS_00049622-exon-scaffold_162-1575043694:43510..43561Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1575043694:42487..42683TCONS_00049622-exon-scaffold_162-1575043694:42487..42683Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1575043694:39808..40065TCONS_00049622-exon-scaffold_162-1575043694:39808..40065Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:44956..45007TCONS_00049622-exon-scaffold_162-1510915933:44956..45007Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:44306..44590TCONS_00049622-exon-scaffold_162-1510915933:44306..44590Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:43943..44003TCONS_00049622-exon-scaffold_162-1510915933:43943..44003Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:43510..43561TCONS_00049622-exon-scaffold_162-1510915933:43510..43561Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:42487..42683TCONS_00049622-exon-scaffold_162-1510915933:42487..42683Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1510915933:39808..40065TCONS_00049622-exon-scaffold_162-1510915933:39808..40065Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:44956..45007TCONS_00049622-exon-scaffold_162-1491911889:44956..45007Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:44306..44590TCONS_00049622-exon-scaffold_162-1491911889:44306..44590Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:43943..44003TCONS_00049622-exon-scaffold_162-1491911889:43943..44003Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:43510..43561TCONS_00049622-exon-scaffold_162-1491911889:43510..43561Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:42487..42683TCONS_00049622-exon-scaffold_162-1491911889:42487..42683Clytia hemisphaericaexon
TCONS_00049622-exon-scaffold_162-1491911889:39808..40065TCONS_00049622-exon-scaffold_162-1491911889:39808..40065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:39808..45007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00015089	0.00277429	3.55923	7.13657	0	0	0	1.7405	0	0	1.31696	3.90712	17.7345	14.3584	25.1713	34.3083	3.33414	0.443013	39.6189	31.6397	9.987	10.1747	14.2361	13.8025	7.70931	17.3244	0.428734	1.71621	6.05431	12.1545
Blast
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BLAST of TCONS_00049622 vs. Swiss-Prot (Human)
Match: CD033 (UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.777e-53
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 1 
Query:  151 MNYKITKEWNDKSANHNPASISLSWQSGNDYVTAIFEAPFFDDPAAPKGEVGRPFPKLWDYEVVEIFFLSSKSQEYLEVEVSPHGQHLLLLLKGVRNMIEDELPMNYTASIDLNNKTWKGHAHIPLAYFPRSVDRMNAYAIHGSNEKRVYEALYPTPEGKFPQ---PDFHRLEYFEDFDLWKIVTDSSVTIGNYWNQ 732
            M++KI   W+     H P  I L+   G+  V     APFF DP AP GE G+PF +LWDYEVVE FFL+  +++YLEVE+ PHGQHL+LLL G RN+ + ELP+++  S       W+G A++P +YFP +V + N++AIHGS +KR YEALYP P+ +  Q   PDFH LEYF+ F+        +  +G  W Q
Sbjct:    1 MDFKIEHTWDGFPVKHEPVFIRLN--PGDRGVMMDISAPFFRDPPAPLGEPGKPFNELWDYEVVEAFFLNDITEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFRMS--RGETKWEGKAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHELQQGQKPDFHCLEYFKSFNF-------NTLLGEEWKQ 186
The following BLAST results are available for this feature:
BLAST of TCONS_00049622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD0334.777e-5346.19UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33... [more]
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