TCONS_00049621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049621
Unique NameTCONS_00049621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049621 ID=TCONS_00049621|Name=TCONS_00049621|organism=Clytia hemisphaerica|type=transcript|length=983bp
AAATTATTCTAGTTTTTAACTTTATAacgatttttcatattttacaaACG
GTACAATATACATAGTTTAGAAATGAAATCAAATTGTATGATATTCAGTT
TTCTTGCTAAATTCAATATAAATTTATGAGTTTGAAAGAAGCTGTGTGAA
ATGATGGGTCATCTTAAAGAGTTGTGGACAGTTCTTAGCTTGgctgccat
tttgttttcagTGCGATCAATCACAACAATGAATtataaaattacaaaag
aatGGAACGACAAATCGGCCAATCATAATCCAGCATCTATTTCACTGTCA
TGGCAATCAGGGAATGATTACGTCACCGCTATCTTTGAGGCGCCATTTTT
CGACGACCCTGCAGCGCCAAAGGGAGAAGTTGGGAGACCGTTCCCGAAAC
TCTGGGATTACGAAGtGGTAGAGATTTTCTTCTTATCTTCAAAAAGTCAA
GAATATTTGGAAGTTGAAGTTTCACCACATGGTCAGCATCTTTTGTTGCT
CCTCAAAGGCGTCCGCAACATGATCGAGGACGAACTTCCAATGAACTACA
CAGCTTCCATCGACCTTAACAACAAAACGTGGAAAGGTCACGCGCACATC
CCGCTCGCATATTTCCCGCGAAGTGTGGACCGAATGAATGCGTACGCCAT
CCACGGTTCGAATGAAAAGCGTGTATACGAAGCGCTCTATCCAACGCCAG
AAGGGAAATTCCCTCAACCTGATTTCCATCGATTGGAATATTTCGAAGAT
TTCGATTTATGGAAGATCGTTACTGATAGCTCGGTTACTATTGGTAACTA
CTGGAACCAATTCCCAAAGacgtgaaaaaagttttttttgtacttcatta
ttttcatatttgaaaatatatcaGCACGCATGCTCGTTCAAAGCTTTAAT
GACTCATCTTCGTATCAACATCAATCTACTTGACTACCTACAGAATGAGA
AATTCTTCTAAATTTGAGCAAGTGAATTAATCC
Run BLAST on NCBI

transcript from alignment at scaffold_162:39808..44932-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049621 ID=TCONS_00049621|Name=TCONS_00049621|organism=Clytia hemisphaerica|type=transcript|length=5125bp|location=Sequence derived from alignment at scaffold_162:39808..44932- (Clytia hemisphaerica)
AAATTATTCTAGTTTTTAACTTTATAACGATTTTTCATATTTTACAAACG
GTACAATATACATAGTTTAGAAATGAAATCAAATTGTATGATATTCAGTT
TTCTTGCTAAATTCAATATAAATTTATGAGGTACGTTTCTTTCGTTGGCT
TTTTCATGTATGTTTCCTTGTTTTGATGTTTTTTGAAACCGCATACTTGT
CCAATGAGATCGTGAATCTTTTTTAGTCTGTGAAACAATTTTTTTGATTT
CAAGAACAATATTTGTGCAGCCTGTCTTTTGTTTGACGAACGAAAAAATG
ATTTTGATCATATTTTCTATACCCTCTATTCTTTTCCGTCAGTTTGAAAG
AAGCTGTGTGAAATGATGGGTCATCTTAAAGAGTTGTGGACAGTTCTTAG
CTTGGCTGCCATTTTGTTTTCAGTGCGATCAATCACAACAATGAATTATA
AAATTACAAAAGAATGGAACGACAAATCGGCCAATCATAATCCAGCATCT
ATTTCACTGTCATGGCAATCAGGGAATGATTACGTCACCGCTATCTTTGA
GGCGCCATTTTTCGACGACCCTGCAGCGCCAAAGGGAGAAGTTGGGAGAC
CGTTCCCGAAACTCTGGGATTACGAAGGTGATTATTTACTTTAGCAATAC
GAAGGTTATCCGCTTTTAATGACAGATTTTTGGCGTAATAAAGTGCACTT
TAAATTCTCTATTTTTGATGACGTGAAATCAGCAACTTTCAACAACTCAT
TCTTGGCTACTTAATTCGTGAAATCAAAACTACGCGAATTCGCGAAAATT
AATCTTGTTTAAGTGTGAAATTCTGGTTTTATTATTTCTGTCTTTCTCTC
ACTCGAGATGGGAAAGTGTGATTTGTGCTGAAACATCTTCTGAAAGATAT
TTCTGACTTTCTTTTTTTCTTTTGTTCAGTGGTAGAGATTTTCTTCTTAT
CTTCAAAAAGTCAAGAATATTTGGAAGTTGAAGTTTCACCGTAAGATTTT
CCTTCTTTCATTTGAACCCTAACTACACTGAGAATAAAGTTTCGGATGTT
TAAGAAGATAAAACACTTTGTGCTGATCAATACTGCTTCGTGCAATCTTA
TGCAAGATCACTCAAACTTCTTCAGNCGTGCACCTGTCAAATCTTATGCA
AGGTCACTCAAACTTCTTCAGAGATTCTTAACCTGTGCAAAACAATTTTT
CGCTCAAGCTAGGATGATCTTCTCTTGTTTAATTGAACACACCCCTGTCT
CTGTTGTGGGCTGGGATACAACGAAGGAGTTGAATACCAATCTATCAAAA
CATATTTTGCTTGGGTGGAAACTTTCAATTTAGCTCATAAACCTCATTCA
AATATTATGTTTCTTTTACAGACATGGTCAGCATCTTTTGTTGCTCCTCA
AAGGCGTCCGCAACATGATCGAGGTTGGTGGCAATTTGTTCGCATTTCTT
TCTATGTAGTAGAAGAGACATACGAGACTCCCTTGGATGAAACCTTGATT
TCTGAACACGACCTGTTTGTTTACTGTTAATTTGATGCAATCGATTTGAT
TGTGATTATTCCGGTCTTTTCTCTATTAAACTCTAACAGTTTTCTGTTAC
ATTGTTGGCGAGAGAGCCAGATTGTACCTACACCCTTCTCAAAATGTTAT
AATGTTTTCATCTCTGAATAGTCTTTTATCTCTTGAGAGAATCGCCAAAA
GTCGCTACACGTAAAATAATTCTCGAGTAACCCGTGACACGCTTTTTTTA
TAAGAATAGTGTACTTTGAATGAGGATCAAGTATTCTTAAGAAATTGTTA
AAATTGAGGGTGAAATATTCTTAACGTATTCTTACTTTTTTAGACTTGAC
TTTTTTACAAACATGAGAACTGATCAATTTGAGAGTTTTGGACTTTTGAG
TGAACCTTTGGAACTAAGATTAAATTTCTGCCTCAAAGTTTAAATTCAAG
TCTAACAAAGGAAGCAGTTTTTTTCTGTTGACCAAATACAAAATGTATTC
TTATCAAATTCTGTGAAACTCACCCTAGAGGGTATTCTTAGGGTATTCTT
ACAATTTGGCCAATTTTCACCCTGATATTCTTATAGAAGATATTCTTATT
TTAAAAAAGCGTGTACCTAAGCCTGGTACTTAAGCCATGCTTAAAGTTGT
AAATATTGGATTCACCAAATGGATTTTTTGTGGCCAGGTTTCTGGGCTTA
TTGAAGTCAAAAGAACTACCATGATATTTAAATCTTCTTCTCTTAACAGG
ACGAACTTCCAATGAACTACACAGCTTCCATCGACCTTAACAACAAAACG
TGGAAAGGTCACGCGCACATCCCGCTCGCATATTTCCCGCGAAGTGTGGA
CCGAATGAATGCGTACGCCATCCACGGTTCGAATGAAAAGCGTGTATACG
AAGCGCTCTATCCAACGCCAGAAGGGAAATTCCCTCAACCTGATTTGTAA
GTATTTTTACCTTTGAAACTACACCCTTGTTGCGTTTCATCCCATACTCT
CACAACACCCCTGTCTCGTGTTAATGACTACCATGTTACTTCGAATAAAC
GCCTCTCCTAAAATCCGAAAAATTAATAAACGCCCGGGGTGCTTATTCGA
AGTAATACAGTACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGCG
TTTTAGCGAGTTTTCCCTATTTTCGCTAAAATATAAATCTCGCTAAAACG
CGCCGAATTGACAGATGGTTAAAATTTATCCGCAAGAAATTTTTCGAAAA
GCTGATTCGCTAAAATAAATCCAGTATGTTTTTTCTTTCATTTTTTGGAC
CTACCCCGGTGGGGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCC
GTCCGTCCGTCCGTCCGTTCGTTACCAGCTTTTCTCGAGATTGAATCATA
GGAATCATTTGATTTTTGGTACAAAGGTGCAAAACGGTAGTGGCCAAAAT
GTGACGAAGCCCGATTTTCGAAAAAAAATTTTTTTGGGCAAATTTGGGCC
AAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGTGAAAAAATTGGATC
ATTAATTTTTTCTGATTTTTTGCATGAAAAACGCATGTTTATCTATAAGA
ATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTT
CTTCATGAGATAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTGAAGAA
TATGTGTGATTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAA
AAACTGGCCAAGTTCAAATTTTTTTTATAAGCACATTATCAATTACTTAG
GTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTAAGACTTTTTGCA
CAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCCAATTTTCGA
AAAAAAATATGTTTTTGGGCAAATTGGGGCCAAAAAACGGCTAAAAAGCG
GGTTTTTTGGACTTTGTGAAAAATTGGATCATTGATTTTTTCTGATTTTT
TGCATGGAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAGGGAGATTT
TTGCAAAAAAAATTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAAT
CACTATTAATAAGCATACATTAACGTTCTTAGTCAAATTACTCAATTTTT
TATGAGATAGATGTTTTTTTTGCTCACGGGGGCTTACTTTTGAAGCATAT
ATGTGTTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTACAGAAAAA
CTGGCCAAATTCTATATTTTTTTATAAGCACATTATCAATTACTTAGGTA
TTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAA
AGATGCATAACTATAAACCCTCGAATGTGACTGAGCCCGATTTTCGAAAA
AAAATGTTTTTGGGCAAATTTGGGACAAAAAACGGCTAAAAAAAGGGTTT
TTTGGACAATGTGAAATATTGGATCGTTTTTTTTTTTGATTTTTTGCATG
ATAGTAGGTAAAAGATGGGTTTAGCAGATTTTTGTAAAAAAACTTTTCAG
CTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCATACAT
CAATGTTCTTAGCCAAATTACTCAATTTTTTGATGAGATAGATGTCTTTT
TATGCTCACAAAGTCTTGAATATGAAAGAATATTTCAAGAGCATGAAATT
TCGGTTTCTAAACTTTTTTTTTATAAGAAACAAACGACTAATTTTAATAA
ATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGTTCATGCTCACGTA
GATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAG
TATCACTTGTTATCATTTTGTTATCATTTTCATAATTTTTTCAAAAACTA
CCTAGTAATGGGGGCGTAAATTTCCAAGTTTTTCTGTTCTTAGTCAAGAA
TTGTGTTACAAAGACTATATTGATTTTTGAATTAAAAAACATTATTTTTT
TCTTCGAAATCATTGCCCTCGCTAAAATTAATCCACGCGAAATTTTTGTC
AGACGAGTATTCGCTAAAATTTATCCACGCGAAATTTTTTGAAATCGTGA
TTCGCTAAAATAAATCCAAAAAAATCAAGATTTTCCTGATTCGCTAATAT
ACGCTAAAATTAATCTCGCTAAAATTTCTACGATTAAAGTAGTTGATAGG
TAGGATACTCAAAATTTCAAATTTGAACATGAAACCAAGAGTGGTAGTCA
ACATTAATTTTTTAGCTAATAACTTTGTTTTGGCGTTACATTTTACCTAT
ATATAGTGATTTGAGTCATGAAGAACAGTCAGTAATCCTGACTCCTTTTC
TTATTTATCACTTTCAGCCATCGATTGGAATATTTCGAAGATTTCGATTT
ATGGAAGATCGTTACTGATAGCTCGGTTACTATTGGTAACTACTGGAACC
AATTCCCAAAGACGTGAAAAAAGTTTTTTTTGTACTTCATTATTTTCATA
TTTGAAAATATATCAGCACGCATGCTCGTTCAAAGCTTTAATGACTCATC
TTCGTATCAACATCAATCTACTTGACTACCTACAGAATGAGAAATTCTTC
TAAATTTGAGCAAGTGAATTAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031462XLOC_031462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049621-exon-scaffold_162-1575043694:44803..44932TCONS_00049621-exon-scaffold_162-1575043694:44803..44932Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1575043694:44306..44590TCONS_00049621-exon-scaffold_162-1575043694:44306..44590Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1575043694:43943..44003TCONS_00049621-exon-scaffold_162-1575043694:43943..44003Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1575043694:43510..43561TCONS_00049621-exon-scaffold_162-1575043694:43510..43561Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1575043694:42487..42683TCONS_00049621-exon-scaffold_162-1575043694:42487..42683Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1575043694:39808..40065TCONS_00049621-exon-scaffold_162-1575043694:39808..40065Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:44803..44932TCONS_00049621-exon-scaffold_162-1510915933:44803..44932Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:44306..44590TCONS_00049621-exon-scaffold_162-1510915933:44306..44590Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:43943..44003TCONS_00049621-exon-scaffold_162-1510915933:43943..44003Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:43510..43561TCONS_00049621-exon-scaffold_162-1510915933:43510..43561Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:42487..42683TCONS_00049621-exon-scaffold_162-1510915933:42487..42683Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1510915933:39808..40065TCONS_00049621-exon-scaffold_162-1510915933:39808..40065Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:44803..44932TCONS_00049621-exon-scaffold_162-1491911889:44803..44932Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:44306..44590TCONS_00049621-exon-scaffold_162-1491911889:44306..44590Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:43943..44003TCONS_00049621-exon-scaffold_162-1491911889:43943..44003Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:43510..43561TCONS_00049621-exon-scaffold_162-1491911889:43510..43561Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:42487..42683TCONS_00049621-exon-scaffold_162-1491911889:42487..42683Clytia hemisphaericaexon
TCONS_00049621-exon-scaffold_162-1491911889:39808..40065TCONS_00049621-exon-scaffold_162-1491911889:39808..40065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:39808..44932 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.513206	0	2.80299	3.06017	2.57405	0.108748	2.10412	5.19399	2.99725	2.78804	0.517802	1.91945	2.48933	2.36434	0	0.761917	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00049621 vs. Swiss-Prot (Human)
Match: CD033 (UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 9.862e-53
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 1 
Query:  229 MNYKITKEWNDKSANHNPASISLSWQSGNDYVTAIFEAPFFDDPAAPKGEVGRPFPKLWDYEVVEIFFLSSKSQEYLEVEVSPHGQHLLLLLKGVRNMIEDELPMNYTASIDLNNKTWKGHAHIPLAYFPRSVDRMNAYAIHGSNEKRVYEALYPTPEGKFPQ---PDFHRLEYFEDFDLWKIVTDSSVTIGNYWNQ 810
            M++KI   W+     H P  I L+   G+  V     APFF DP AP GE G+PF +LWDYEVVE FFL+  +++YLEVE+ PHGQHL+LLL G RN+ + ELP+++  S       W+G A++P +YFP +V + N++AIHGS +KR YEALYP P+ +  Q   PDFH LEYF+ F+        +  +G  W Q
Sbjct:    1 MDFKIEHTWDGFPVKHEPVFIRLN--PGDRGVMMDISAPFFRDPPAPLGEPGKPFNELWDYEVVEAFFLNDITEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFRMS--RGETKWEGKAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHELQQGQKPDFHCLEYFKSFNF-------NTLLGEEWKQ 186
The following BLAST results are available for this feature:
BLAST of TCONS_00049621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD0339.862e-5346.19UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33... [more]
back to top