TCONS_00049620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049620
Unique NameTCONS_00049620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049620 ID=TCONS_00049620|Name=TCONS_00049620|organism=Clytia hemisphaerica|type=transcript|length=876bp
acgatttttcatattttacaaACGGTACAATATACATAGTTTAGAAATGA
AATCAAATTGTATGATATTCAGTTTTCTTGCTAAATTCAATATAAATTTA
TGAGTGCGATCAATCACAACAATGAATtataaaattacaaaagaatGGAA
CGACAAATCGGCCAATCATAATCCAGCATCTATTTCACTGTCATGGCAAT
CAGGGAATGATTACGTCACCGCTATCTTTGAGGCGCCATTTTTCGACGAC
CCTGCAGCGCCAAAGGGAGAAGTTGGGAGACCGTTCCCGAAACTCTGGGA
TTACGAAGtGGTAGAGATTTTCTTCTTATCTTCAAAAAGTCAAGAATATT
TGGAAGTTGAAGTTTCACCACATGGTCAGCATCTTTTGTTGCTCCTCAAA
GGCGTCCGCAACATGATCGAGGACGAACTTCCAATGAACTACACAGCTTC
CATCGACCTTAACAACAAAACGTGGAAAGGTCACGCGCACATCCCGCTCG
CATATTTCCCGCGAAGTGTGGACCGAATGAATGCGTACGCCATCCACGGT
TCGAATGAAAAGCGTGTATACGAAGCGCTCTATCCAACGCCAGAAGGGAA
ATTCCCTCAACCTGATTTCCATCGATTGGAATATTTCGAAGATTTCGATT
TATGGAAGATCGTTACTGATAGCTCGGTTACTATTGGTAACTACTGGAAC
CAATTCCCAAAGacgtgaaaaaagttttttttgtacttcattattttcat
atttgaaaatatatcaGCACGCATGCTCGTTCAAAGCTTTAATGACTCAT
CTTCGTATCAACATCAATCTACTTGACTACCTACAGAATGAGAAATTCTT
CTAAATTTGAGCAAGTGAATTAATCC
Run BLAST on NCBI

transcript from alignment at scaffold_162:39808..44906-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049620 ID=TCONS_00049620|Name=TCONS_00049620|organism=Clytia hemisphaerica|type=transcript|length=5099bp|location=Sequence derived from alignment at scaffold_162:39808..44906- (Clytia hemisphaerica)
ACGATTTTTCATATTTTACAAACGGTACAATATACATAGTTTAGAAATGA
AATCAAATTGTATGATATTCAGTTTTCTTGCTAAATTCAATATAAATTTA
TGAGGTACGTTTCTTTCGTTGGCTTTTTCATGTATGTTTCCTTGTTTTGA
TGTTTTTTGAAACCGCATACTTGTCCAATGAGATCGTGAATCTTTTTTAG
TCTGTGAAACAATTTTTTTGATTTCAAGAACAATATTTGTGCAGCCTGTC
TTTTGTTTGACGAACGAAAAAATGATTTTGATCATATTTTCTATACCCTC
TATTCTTTTCCGTCAGTTTGAAAGAAGCTGTGTGAAATGATGGGTCATCT
TAAAGAGTTGTGGACAGTTCTTAGCTTGGCTGCCATTTTGTTTTCAGTGC
GATCAATCACAACAATGAATTATAAAATTACAAAAGAATGGAACGACAAA
TCGGCCAATCATAATCCAGCATCTATTTCACTGTCATGGCAATCAGGGAA
TGATTACGTCACCGCTATCTTTGAGGCGCCATTTTTCGACGACCCTGCAG
CGCCAAAGGGAGAAGTTGGGAGACCGTTCCCGAAACTCTGGGATTACGAA
GGTGATTATTTACTTTAGCAATACGAAGGTTATCCGCTTTTAATGACAGA
TTTTTGGCGTAATAAAGTGCACTTTAAATTCTCTATTTTTGATGACGTGA
AATCAGCAACTTTCAACAACTCATTCTTGGCTACTTAATTCGTGAAATCA
AAACTACGCGAATTCGCGAAAATTAATCTTGTTTAAGTGTGAAATTCTGG
TTTTATTATTTCTGTCTTTCTCTCACTCGAGATGGGAAAGTGTGATTTGT
GCTGAAACATCTTCTGAAAGATATTTCTGACTTTCTTTTTTTCTTTTGTT
CAGTGGTAGAGATTTTCTTCTTATCTTCAAAAAGTCAAGAATATTTGGAA
GTTGAAGTTTCACCGTAAGATTTTCCTTCTTTCATTTGAACCCTAACTAC
ACTGAGAATAAAGTTTCGGATGTTTAAGAAGATAAAACACTTTGTGCTGA
TCAATACTGCTTCGTGCAATCTTATGCAAGATCACTCAAACTTCTTCAGN
CGTGCACCTGTCAAATCTTATGCAAGGTCACTCAAACTTCTTCAGAGATT
CTTAACCTGTGCAAAACAATTTTTCGCTCAAGCTAGGATGATCTTCTCTT
GTTTAATTGAACACACCCCTGTCTCTGTTGTGGGCTGGGATACAACGAAG
GAGTTGAATACCAATCTATCAAAACATATTTTGCTTGGGTGGAAACTTTC
AATTTAGCTCATAAACCTCATTCAAATATTATGTTTCTTTTACAGACATG
GTCAGCATCTTTTGTTGCTCCTCAAAGGCGTCCGCAACATGATCGAGGTT
GGTGGCAATTTGTTCGCATTTCTTTCTATGTAGTAGAAGAGACATACGAG
ACTCCCTTGGATGAAACCTTGATTTCTGAACACGACCTGTTTGTTTACTG
TTAATTTGATGCAATCGATTTGATTGTGATTATTCCGGTCTTTTCTCTAT
TAAACTCTAACAGTTTTCTGTTACATTGTTGGCGAGAGAGCCAGATTGTA
CCTACACCCTTCTCAAAATGTTATAATGTTTTCATCTCTGAATAGTCTTT
TATCTCTTGAGAGAATCGCCAAAAGTCGCTACACGTAAAATAATTCTCGA
GTAACCCGTGACACGCTTTTTTTATAAGAATAGTGTACTTTGAATGAGGA
TCAAGTATTCTTAAGAAATTGTTAAAATTGAGGGTGAAATATTCTTAACG
TATTCTTACTTTTTTAGACTTGACTTTTTTACAAACATGAGAACTGATCA
ATTTGAGAGTTTTGGACTTTTGAGTGAACCTTTGGAACTAAGATTAAATT
TCTGCCTCAAAGTTTAAATTCAAGTCTAACAAAGGAAGCAGTTTTTTTCT
GTTGACCAAATACAAAATGTATTCTTATCAAATTCTGTGAAACTCACCCT
AGAGGGTATTCTTAGGGTATTCTTACAATTTGGCCAATTTTCACCCTGAT
ATTCTTATAGAAGATATTCTTATTTTAAAAAAGCGTGTACCTAAGCCTGG
TACTTAAGCCATGCTTAAAGTTGTAAATATTGGATTCACCAAATGGATTT
TTTGTGGCCAGGTTTCTGGGCTTATTGAAGTCAAAAGAACTACCATGATA
TTTAAATCTTCTTCTCTTAACAGGACGAACTTCCAATGAACTACACAGCT
TCCATCGACCTTAACAACAAAACGTGGAAAGGTCACGCGCACATCCCGCT
CGCATATTTCCCGCGAAGTGTGGACCGAATGAATGCGTACGCCATCCACG
GTTCGAATGAAAAGCGTGTATACGAAGCGCTCTATCCAACGCCAGAAGGG
AAATTCCCTCAACCTGATTTGTAAGTATTTTTACCTTTGAAACTACACCC
TTGTTGCGTTTCATCCCATACTCTCACAACACCCCTGTCTCGTGTTAATG
ACTACCATGTTACTTCGAATAAACGCCTCTCCTAAAATCCGAAAAATTAA
TAAACGCCCGGGGTGCTTATTCGAAGTAATACAGTACTTTAATCGTAGAA
ATTTTAGCGAGACTAATTTTAGCGTTTTAGCGAGTTTTCCCTATTTTCGC
TAAAATATAAATCTCGCTAAAACGCGCCGAATTGACAGATGGTTAAAATT
TATCCGCAAGAAATTTTTCGAAAAGCTGATTCGCTAAAATAAATCCAGTA
TGTTTTTTCTTTCATTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTAT
AAATTCACCTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTTCGTTACC
AGCTTTTCTCGAGATTGAATCATAGGAATCATTTGATTTTTGGTACAAAG
GTGCAAAACGGTAGTGGCCAAAATGTGACGAAGCCCGATTTTCGAAAAAA
AATTTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTT
TGGACTTTGTGAAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCATG
AAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAAT
GTTCTTAGTCAAATTACTCAATTTCTTCATGAGATAGATGTTTTTTTTGC
TCATGAGGGCTTACTTTTGAAGAATATGTGTGATTAGACATGAAATTTTG
GTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAGTTCAAATTTTTTTT
ATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTC
TTTCATTCTTTAAGACTTTTTGCACAAAGATGCATAACTATAAACCCTCG
AATGTGACGGAGCCCAATTTTCGAAAAAAAATATGTTTTTGGGCAAATTG
GGGCCAAAAAACGGCTAAAAAGCGGGTTTTTTGGACTTTGTGAAAAATTG
GATCATTGATTTTTTCTGATTTTTTGCATGGAAGTAGGGTACCATCATAG
GTAAAAGATGGCTCAGGGAGATTTTTGCAAAAAAAATTTGTTGGCTCAAA
AAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATTAACGT
TCTTAGTCAAATTACTCAATTTTTTATGAGATAGATGTTTTTTTTGCTCA
CGGGGGCTTACTTTTGAAGCATATATGTGTTTAGACATGAAATTTTGGTT
GCTTGGCGTGTTTTTACAGAAAAACTGGCCAAATTCTATATTTTTTTATA
AGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTT
CATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAAT
GTGACTGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCAAATTTGGGAC
AAAAAACGGCTAAAAAAAGGGTTTTTTGGACAATGTGAAATATTGGATCG
TTTTTTTTTTTGATTTTTTGCATGATAGTAGGTAAAAGATGGGTTTAGCA
GATTTTTGTAAAAAAACTTTTCAGCTCAAAAAACGCATCTTTATCTATAA
GAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAATTACTCAAT
TTTTTGATGAGATAGATGTCTTTTTATGCTCACAAAGTCTTGAATATGAA
AGAATATTTCAAGAGCATGAAATTTCGGTTTCTAAACTTTTTTTTTATAA
GAAACAAACGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATGA
TTGTTTAACGTTCATGCTCACGTAGATATCAATTATATATGTGTTAAATG
CATAACCAGGTAGGTCCATAAAAGTATCACTTGTTATCATTTTGTTATCA
TTTTCATAATTTTTTCAAAAACTACCTAGTAATGGGGGCGTAAATTTCCA
AGTTTTTCTGTTCTTAGTCAAGAATTGTGTTACAAAGACTATATTGATTT
TTGAATTAAAAAACATTATTTTTTTCTTCGAAATCATTGCCCTCGCTAAA
ATTAATCCACGCGAAATTTTTGTCAGACGAGTATTCGCTAAAATTTATCC
ACGCGAAATTTTTTGAAATCGTGATTCGCTAAAATAAATCCAAAAAAATC
AAGATTTTCCTGATTCGCTAATATACGCTAAAATTAATCTCGCTAAAATT
TCTACGATTAAAGTAGTTGATAGGTAGGATACTCAAAATTTCAAATTTGA
ACATGAAACCAAGAGTGGTAGTCAACATTAATTTTTTAGCTAATAACTTT
GTTTTGGCGTTACATTTTACCTATATATAGTGATTTGAGTCATGAAGAAC
AGTCAGTAATCCTGACTCCTTTTCTTATTTATCACTTTCAGCCATCGATT
GGAATATTTCGAAGATTTCGATTTATGGAAGATCGTTACTGATAGCTCGG
TTACTATTGGTAACTACTGGAACCAATTCCCAAAGACGTGAAAAAAGTTT
TTTTTGTACTTCATTATTTTCATATTTGAAAATATATCAGCACGCATGCT
CGTTCAAAGCTTTAATGACTCATCTTCGTATCAACATCAATCTACTTGAC
TACCTACAGAATGAGAAATTCTTCTAAATTTGAGCAAGTGAATTAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031462XLOC_031462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049620-exon-scaffold_162-1575043694:44803..44906TCONS_00049620-exon-scaffold_162-1575043694:44803..44906Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1575043694:44306..44509TCONS_00049620-exon-scaffold_162-1575043694:44306..44509Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1575043694:43943..44003TCONS_00049620-exon-scaffold_162-1575043694:43943..44003Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1575043694:43510..43561TCONS_00049620-exon-scaffold_162-1575043694:43510..43561Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1575043694:42487..42683TCONS_00049620-exon-scaffold_162-1575043694:42487..42683Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1575043694:39808..40065TCONS_00049620-exon-scaffold_162-1575043694:39808..40065Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:44803..44906TCONS_00049620-exon-scaffold_162-1510915933:44803..44906Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:44306..44509TCONS_00049620-exon-scaffold_162-1510915933:44306..44509Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:43943..44003TCONS_00049620-exon-scaffold_162-1510915933:43943..44003Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:43510..43561TCONS_00049620-exon-scaffold_162-1510915933:43510..43561Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:42487..42683TCONS_00049620-exon-scaffold_162-1510915933:42487..42683Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1510915933:39808..40065TCONS_00049620-exon-scaffold_162-1510915933:39808..40065Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:44803..44906TCONS_00049620-exon-scaffold_162-1491911889:44803..44906Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:44306..44509TCONS_00049620-exon-scaffold_162-1491911889:44306..44509Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:43943..44003TCONS_00049620-exon-scaffold_162-1491911889:43943..44003Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:43510..43561TCONS_00049620-exon-scaffold_162-1491911889:43510..43561Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:42487..42683TCONS_00049620-exon-scaffold_162-1491911889:42487..42683Clytia hemisphaericaexon
TCONS_00049620-exon-scaffold_162-1491911889:39808..40065TCONS_00049620-exon-scaffold_162-1491911889:39808..40065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:39808..44906 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.23523	9.87166	10.9609	8.89696	0	0	0.883457	1.77193e-09	10.9836	4.79644	11.0232	14.657	3.42768	8.42373	3.62501	0.00214638	11.3528	10.2845	0	0	1.794	0	0	0	13.1348	5.50556	3.34822	6.30481	0	0
Blast
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BLAST of TCONS_00049620 vs. Swiss-Prot (Human)
Match: CD033 (UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.942e-53
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 2 
Query:  122 MNYKITKEWNDKSANHNPASISLSWQSGNDYVTAIFEAPFFDDPAAPKGEVGRPFPKLWDYEVVEIFFLSSKSQEYLEVEVSPHGQHLLLLLKGVRNMIEDELPMNYTASIDLNNKTWKGHAHIPLAYFPRSVDRMNAYAIHGSNEKRVYEALYPTPEGKFPQ---PDFHRLEYFEDFDLWKIVTDSSVTIGNYWNQ 703
            M++KI   W+     H P  I L+   G+  V     APFF DP AP GE G+PF +LWDYEVVE FFL+  +++YLEVE+ PHGQHL+LLL G RN+ + ELP+++  S       W+G A++P +YFP +V + N++AIHGS +KR YEALYP P+ +  Q   PDFH LEYF+ F+        +  +G  W Q
Sbjct:    1 MDFKIEHTWDGFPVKHEPVFIRLN--PGDRGVMMDISAPFFRDPPAPLGEPGKPFNELWDYEVVEAFFLNDITEQYLEVELCPHGQHLVLLLSGRRNVWKQELPLSFRMS--RGETKWEGKAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHELQQGQKPDFHCLEYFKSFNF-------NTLLGEEWKQ 186
The following BLAST results are available for this feature:
BLAST of TCONS_00049620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD0336.942e-5346.19UPF0462 protein C4orf33 OS=Homo sapiens GN=C4orf33... [more]
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