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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049616 ID=TCONS_00049616|Name=TCONS_00049616|organism=Clytia hemisphaerica|type=transcript|length=1289bp
NNTGTCCACCACCCTGTGCAACTTCCTGCTTCCCCAGTTGCCCAGTTTCA
TGCTGTCATAGAGCCACCATCCCTGGTTTAGCATTAGCAGGAACGGCTAT
GGAATCAGCTCCTATGACACTGACAGCAGCTGCCCTTAACACAAAGCCAA
TCAGTCCCAGTAAAGAGCTCTCCATTGCTGATATGTGCCCACCGATATGC
TCAGTAGACTGTCTTGCATTCTGTCCAGATATGTGTTGTAGTGGCAAATC
AAAAAGCAGTGCTTCTGCTAGAGATCTACCAGCTGCTCCGAAGGCCAAGC
CATCACTAAGAGTTGATGTTCCCGGACAGCCTTCTCCACAAATCCAAGCT
GAACTATCCGCCGTACAGGTCGTCAGAAACGCTCAAAATATGGTTCAAAA
TCAACGTCAAGCAGTATCAAACGCAATGTCTGCTAATCGTCTAAAAGCCG
TGAATGTTGCTCAAGCGGTCCCAAATACAGGACGACAAGGGCTTACACAG
GCATATACTAATAACTTTGTTAAAAAACCAGCGCCGAGTATAAACGGGCA
AGAACATTTATTGATCAACAGATCACCGCCTATGGCGTCTAGTTTCCCGC
CCAGCGGACACCAGTTGTATACTCGTTCTAAGAACTGTAAGAGATCTTGC
TTTTCCGTGTGCTCTCACGATTGCCCGATCAGTTGTTGCAATATTGGGAA
AGGAAAAAGACGATCCCAAGTCCCACACAAATCGTGAGAAGGAgaaattg
aggatttttatACTTTCTTAACACATACGAACGTTCATTTGACGTCAGAT
GAATGTTATTTGGACGTTTAGTTAGACATTGTCTTGACGTTATGAACGTT
GAAGACGGATTTGCATTGCTGGTTAGAAACATGGTAAACTTGCCAAGAAG
GCATTATGTTAAACTTTCGATTGAATTGGAGATACAACTTTTTTTGATAA
CGAAAATGAGAAACGTGCTAAAGTCTtctctaaaatgtcaatttaatGAA
ATGTCTTTGAACATGTGCTATACAGACGATGATAAGTCTTGTTATAAACT
GATCCTGTCGAAAATTGGAACATGTCTTGTTTCAAGATAAAGAATCATTT
TTGGACgaaaatatttagaatttttagaataaaCTTTCCACGGAATTTTA
GTTTAACAAGACGATGGGCCCTTTTTTCGGCCAATAATTAGCATAATTTA
TCTGTACATTTTTATAAattagttatttttcaacaaactCATGTAAAATG
TTGAATCTCAAAATTACCTCGAATATTTTCTGTATAAAT Run BLAST on NCBI protein sequence of TCONS_00049616-protein >TCONS_00049616-protein ID=TCONS_00049616-protein|Name=TCONS_00049616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
CPPPCATSCFPSCPVSCCHRATIPGLALAGTAMESAPMTLTAAALNTKPI
SPSKELSIADMCPPICSVDCLAFCPDMCCSGKSKSSASARDLPAAPKAKP
SLRVDVPGQPSPQIQAELSAVQVVRNAQNMVQNQRQAVSNAMSANRLKAV
NVAQAVPNTGRQGLTQAYTNNFVKKPAPSINGQEHLLINRSPPMASSFPP
SGHQLYTRSKNCKRSCFSVCSHDCPISCCNIGKGKRRSQVPHKS Run BLAST on NCBI transcript from alignment at scaffold_161:148751..150039 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049616 ID=TCONS_00049616|Name=TCONS_00049616|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at scaffold_161:148751..150039 (Clytia hemisphaerica)
ATTTATACAGAAAATATTCGAGGTAATTTTGAGATTCAACATTTTACATG
agtttgttgaaaaataactaatTTATAAAAATGTACAGATAAATTATGCT
AATTATTGGCCGAAAAAAGGGCCCATCGTCTTGTTAAACTAAAATTCCGT
GGAAAGtttattctaaaaattctaaatattttcGTCCAAAAATGATTCTT
TATCTTGAAACAAGACATGTTCCAATTTTCGACAGGATCAGTTTATAACA
AGACTTATCATCGTCTGTATAGCACATGTTCAAAGACATTTCattaaatt
gacattttagagaAGACTTTAGCACGTTTCTCATTTTCGTTATCAAAAAA
AGTTGTATCTCCAATTCAATCGAAAGTTTAACATAATGCCTTCTTGGCAA
GTTTACCATGTTTCTAACCAGCAATGCAAATCCGTCTTCAACGTTCATAA
CGTCAAGACAATGTCTAACTAAACGTCCAAATAACATTCATCTGACGTCA
AATGAACGTTCGTATGTGTTAAGAAAGTataaaaatcctcaatttcTCCT
TCTCACGATTTGTGTGGGACTTGGGATCGTCTTTTTCCTTTCCCAATATT
GCAACAACTGATCGGGCAATCGTGAGAGCACACGGAAAAGCAAGATCTCT
TACAGTTCTTAGAACGAGTATACAACTGGTGTCCGCTGGGCGGGAAACTA
GACGCCATAGGCGGTGATCTGTTGATCAATAAATGTTCTTGCCCGTTTAT
ACTCGGCGCTGGTTTTTTAACAAAGTTATTAGTATATGCCTGTGTAAGCC
CTTGTCGTCCTGTATTTGGGACCGCTTGAGCAACATTCACGGCTTTTAGA
CGATTAGCAGACATTGCGTTTGATACTGCTTGACGTTGATTTTGAACCAT
ATTTTGAGCGTTTCTGACGACCTGTACGGCGGATAGTTCAGCTTGGATTT
GTGGAGAAGGCTGTCCGGGAACATCAACTCTTAGTGATGGCTTGGCCTTC
GGAGCAGCTGGTAGATCTCTAGCAGAAGCACTGCTTTTTGATTTGCCACT
ACAACACATATCTGGACAGAATGCAAGACAGTCTACTGAGCATATCGGTG
GGCACATATCAGCAATGGAGAGCTCTTTACTGGGACTGATTGGCTTTGTG
TTAAGGGCAGCTGCTGTCAGTGTCATAGGAGCTGATTCCATAGCCGTTCC
TGCTAATGCTAAACCAGGGATGGTGGCTCTATGACAGCATGAAACTGGGC
AACTGGGGAAGCAGGAAGTTGCACAGGGTGGTGGACANN Coding sequence (CDS) from alignment at scaffold_161:148751..150039 >TCONS_00049616 ID=TCONS_00049616|Name=TCONS_00049616|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_161:148751..150039 (Clytia hemisphaerica)
TCACGATTTGTGTGGGACTTGGGATCGTCTTTTTCCTTTCCCAATATTGC
AACAACTGATCGGGCAATCGTGAGAGCACACGGAAAAGCAAGATCTCTTA
CAGTTCTTAGAACGAGTATACAACTGGTGTCCGCTGGGCGGGAAACTAGA
CGCCATAGGCGGTGATCTGTTGATCAATAAATGTTCTTGCCCGTTTATAC
TCGGCGCTGGTTTTTTAACAAAGTTATTAGTATATGCCTGTGTAAGCCCT
TGTCGTCCTGTATTTGGGACCGCTTGAGCAACATTCACGGCTTTTAGACG
ATTAGCAGACATTGCGTTTGATACTGCTTGACGTTGATTTTGAACCATAT
TTTGAGCGTTTCTGACGACCTGTACGGCGGATAGTTCAGCTTGGATTTGT
GGAGAAGGCTGTCCGGGAACATCAACTCTTAGTGATGGCTTGGCCTTCGG
AGCAGCTGGTAGATCTCTAGCAGAAGCACTGCTTTTTGATTTGCCACTAC
AACACATATCTGGACAGAATGCAAGACAGTCTACTGAGCATATCGGTGGG
CACATATCAGCAATGGAGAGCTCTTTACTGGGACTGATTGGCTTTGTGTT
AAGGGCAGCTGCTGTCAGTGTCATAGGAGCTGATTCCATAGCCGTTCCTG
CTAATGCTAAACCAGGGATGGTGGCTCTATGACAGCATGAAACTGGGCAA
CTGGGGAAGCAGGAAGTTGCACAGGGTGGTGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049616-exon-scaffold_161-1491911889:148751..150039 | TCONS_00049616-exon-scaffold_161-1491911889:148751..150039 | Clytia hemisphaerica | exon |
| TCONS_00049616-exon-scaffold_161-1510915933:148751..150039 | TCONS_00049616-exon-scaffold_161-1510915933:148751..150039 | Clytia hemisphaerica | exon |
| TCONS_00049616-exon-scaffold_161-1575043694:148751..150039 | TCONS_00049616-exon-scaffold_161-1575043694:148751..150039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:148751..150039 . |
Blast
The following BLAST results are available for this feature:
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