TCONS_00049612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049612
Unique NameTCONS_00049612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049612 ID=TCONS_00049612|Name=TCONS_00049612|organism=Clytia hemisphaerica|type=transcript|length=553bp
GCTAAATGCACCTATCATTTCGTTACCAGCCCCATGAAATGTAAAACGCG
CCGCTGAGGGTTGATAGGTGAATAAAATCTCAGCTGACTTTTGTTGCCTA
TTGTACTCTCGAAACATGGGGTCCGCAAATTCTCTCGGTAAAAATATCAT
TTCATTAGTGTAccaccccagctggcacacaacgttgtttcaacgtttat
ttaacgttcacaacgtccatataacgttagatgaacgttgaaacaacgtt
gtgtgccagctgggacaattaaaatgaaattggcCTGTTTTTGCTCACAA
TTCATGATACCATGACGTAAAGTTTTATACGAAAGCAGCCAAAAAAGACG
GGCatgtttgccactaattttgaattctaataaaaaaaactagTGGTAAA
GTTCGGGCTCTTTttggtgcttccgtataaaacattacgtcatgagtATC
ATAAATTGTACTCTCCAAACGTGGGGTTTGCTGATTCTCTGGAAGAAAAT
GTCGTTTCATTTGACGTATACCACAATTGAAATGGAATTAGCCTGTTATT
TAT
Run BLAST on NCBI

transcript from alignment at scaffold_161:87635..88187

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049612 ID=TCONS_00049612|Name=TCONS_00049612|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at scaffold_161:87635..88187 (Clytia hemisphaerica)
ATAAATAACAGGCTAATTCCATTTCAATTGTGGTATACGTCAAATGAAAC
GACATTTTCTTCCAGAGAATCAGCAAACCCCACGTTTGGAGAGTACAATT
TATGATactcatgacgtaatgttttatacggaagcaccaaAAAGAGCCCG
AACTTTACCActagttttttttattagaattcaaaattagtggcaaacat
GCCCGTCTTTTTTGGCTGCTTTCGTATAAAACTTTACGTCATGGTATCAT
GAATTGTGAGCAAAAACAGgccaatttcattttaattgtcccagctggca
cacaacgttgtttcaacgttcatctaacgttatatggacgttgtgaacgt
taaataaacgttgaaacaacgttgtgtgccagctggggtggTACACTAAT
GAAATGATATTTTTACCGAGAGAATTTGCGGACCCCATGTTTCGAGAGTA
CAATAGGCAACAAAAGTCAGCTGAGATTTTATTCACCTATCAACCCTCAG
CGGCGCGTTTTACATTTCATGGGGCTGGTAACGAAATGATAGGTGCATTT
AGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031454XLOC_031454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049612-exon-scaffold_161-1491911889:87635..88187TCONS_00049612-exon-scaffold_161-1491911889:87635..88187Clytia hemisphaericaexon
TCONS_00049612-exon-scaffold_161-1510915933:87635..88187TCONS_00049612-exon-scaffold_161-1510915933:87635..88187Clytia hemisphaericaexon
TCONS_00049612-exon-scaffold_161-1575043694:87635..88187TCONS_00049612-exon-scaffold_161-1575043694:87635..88187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:87635..88187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155396	0.584545	0.290622	1.44274	0.307749	0.272093	0.279623	0.275911	0.890701	0.626254	0.678574	2.10802	0.715774	0.938622	1.60742	1.35047	1.39374	0.418124	1.82048	0.823357	0.466355	0.570562	0	0.394137	0.690853	1.29622	3.78344	6.21691	0.536513	0.42136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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