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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049610 ID=TCONS_00049610|Name=TCONS_00049610|organism=Clytia hemisphaerica|type=transcript|length=857bp
aaacatgaaaaaaaagagATAATGATAAACATTACAACATTCTGGTCATT
CAAATAAAGATCATGGTAACCAACAGTAGGTCACTTTCACCTTGAGTgcc
ctaccccccccccctgggtaaAGGAAATGGGAAAAAGACTACTTTTCTTA
TTGTTTTGGTATTTGGGGCCTAAATTCGTTCTTACACTGTTCTAATTGCT
AGGGTAAAAGTGAGGTAATTTAGGTTTACGATCATTCTTTTACTGCTCTG
ATCgtaaatttgattaaaattccGCTATTCCATTTTCAGCAGTGTTgcta
aatttttcttattttttgggcatttttgagcctcgatgtgcttataaaaa
agagtataTCCGATTATGCTTGTTTATGTGAATAAAATATTCTGATAATT
TGCGTGATGTAGTTTCCATTGTTCNCTTGTTTATCTGAATAAAATATTCT
GATAATTTGCGTGATTTAGTTTCCATTGTTCTTCAATCAATAAAGTCGTA
TTCCCAATTTCAGGGTGTTCTTTCAATCATTCTTCCAATCAATTATAACC
AAGAATCAAATTAAAATCAGCATTATATATAATCAAATTTTAAAGCCATA
TTTAGTTTAACATTTGTCACCATCATAAATTCGTTAATGTTCATTTCGTT
CAATCttcttattcatttttttccaattatTAAAATTTGACATCGCTTGA
TGTCTAACTGacgcagtgccgtaggaagcatttttatattgagggggctg
aagtttagtgacatcgcgagggccaaccatggtttggcccgaggggggaa
attttgaaaatttgagctctagattgcttgaaaatgcactcaattgtgac
aattatg Run BLAST on NCBI transcript from alignment at scaffold_161:264739..265769- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049610 ID=TCONS_00049610|Name=TCONS_00049610|organism=Clytia hemisphaerica|type=transcript|length=1031bp|location=Sequence derived from alignment at scaffold_161:264739..265769- (Clytia hemisphaerica)
AAACATGAAAAAAAAGAGATAATGATAAACATTACAACATTCTGGTCATT
CAAATAAAGATCATGGTAACCAACAGTAGGTCACTTTCACCTTGAGTGCC
CTACCCCCCCCCCCTGGGTAAAGGAAATGGGAAAAAGATGACATTGAATG
ATACTTCAATTTTGTTAAACTTTTTCTATTTAGTGATGACGCCATGCAGT
ACTATAGATTGTTTCATTTATAAGTTATAGTTCATTTGCTTATAGAAAAT
ATCATTCTGAATTCGACATATTTGAAGTTTTTTAGGTGGACAAACAAATT
TTCAATGCGACACTACTTTTCTTATTGTTTTGGTATTTGGGGCCTAAATT
CGTTCTTACACTGTTCTAATTGCTAGGGTAAAAGTGAGGTAATTTAGGTT
TACGATCATTCTTTTACTGCTCTGATCGTAAATTTGATTAAAATTCCGCT
ATTCCATTTTCAGCAGTGTTGCTAAATTTTTCTTATTTTTTGGGCATTTT
TGAGCCTCGATGTGCTTATAAAAAAGAGTATATCCGATTATGCTTGTTTA
TGTGAATAAAATATTCTGATAATTTGCGTGATGTAGTTTCCATTGTTCNC
TTGTTTATCTGAATAAAATATTCTGATAATTTGCGTGATTTAGTTTCCAT
TGTTCTTCAATCAATAAAGTCGTATTCCCAATTTCAGGGTGTTCTTTCAA
TCATTCTTCCAATCAATTATAACCAAGAATCAAATTAAAATCAGCATTAT
ATATAATCAAATTTTAAAGCCATATTTAGTTTAACATTTGTCACCATCAT
AAATTCGTTAATGTTCATTTCGTTCAATCTTCTTATTCATTTTTTTCCAA
TTATTAAAATTTGACATCGCTTGATGTCTAACTGACGCAGTGCCGTAGGA
AGCATTTTTATATTGAGGGGGCTGAAGTTTAGTGACATCGCGAGGGCCAA
CCATGGTTTGGCCCGAGGGGGGAAATTTTGAAAATTTGAGCTCTAGATTG
CTTGAAAATGCACTCAATTGTGACAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049610-exon-scaffold_161-1575043694:265633..265769 | TCONS_00049610-exon-scaffold_161-1575043694:265633..265769 | Clytia hemisphaerica | exon |
| TCONS_00049610-exon-scaffold_161-1575043694:264739..265458 | TCONS_00049610-exon-scaffold_161-1575043694:264739..265458 | Clytia hemisphaerica | exon |
| TCONS_00049610-exon-scaffold_161-1510915933:265633..265769 | TCONS_00049610-exon-scaffold_161-1510915933:265633..265769 | Clytia hemisphaerica | exon |
| TCONS_00049610-exon-scaffold_161-1510915933:264739..265458 | TCONS_00049610-exon-scaffold_161-1510915933:264739..265458 | Clytia hemisphaerica | exon |
| TCONS_00049610-exon-scaffold_161-1491911889:265633..265769 | TCONS_00049610-exon-scaffold_161-1491911889:265633..265769 | Clytia hemisphaerica | exon |
| TCONS_00049610-exon-scaffold_161-1491911889:264739..265458 | TCONS_00049610-exon-scaffold_161-1491911889:264739..265458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:264739..265769 - |
Blast
The following BLAST results are available for this feature:
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