TCONS_00049603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049603
Unique NameTCONS_00049603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049603 ID=TCONS_00049603|Name=TCONS_00049603|organism=Clytia hemisphaerica|type=transcript|length=1466bp
tttctattGTTTACTATGCTTCGGTGAGCTTCCAGCGTACAACACTTTTC
TTGTGCAAAGAAATTTTCCTCGCTTGCAAAATCCTGGaaaaaatttgctc
aaattaATTCAAGCAATAATTTATTATGTGAATTGTCAGGGTTCAAATCT
CGGAAAttgttgtgtttttttgttgttgttaaaagtaatttttgaaaaaa
atggaattAAGCCTGGAATTTACGAAGGAAAAATGAAGATGGGGCACTTT
AATCTATTTTTTGTTGTTCTTGTATTGACTTGTCACGTGATAAATTTGAA
CGCGTTTGATTGGTTAGATGGAGGTGAAGAGGGTGTGGAATTTGAACAAA
ATAATGTCGAATACCAAGTTTCCTCTCGTTGTCACCCGAATCCGTGCGAG
AATGGAGGTATATGTCATGATACAGATGAAGGGATAACTTGCACGTGTGT
CCATGGTTTCCTTGGTCATCAATGTCAAGAATCGAACCCATGCTTTTACA
ACCCATGCCATAATAGCGGACGATGTATCAGTGAAGGTCATGGAGAATAT
TCTTGTGATTGTACGGCCCCTTACGGTGGCTCACATTGCGAAATTCATTC
GATGTGCACACCAAACCCGTGCCATAATGGCGGCGTTTGTCACGTGATGC
GTGAAACACAATCGTGTCATTGTCCAACACGTTTCACAGGAGAGTACTGT
GAAGtggaTCATTGTTCTCGTTGTGACGCGAACGCGTTCTGTGACAATGG
GGATTGTCGTTGCGATGAAGGTTATGAGGGAACTGGATACGAATGCCACG
AGACTCACGAATTGCATCACCATCATCATCACGTCGAAGtaCCAATTCTT
CCACCCCCTCCGCCACCGGAGCCGCCCCGCATGTGTGACCAAACACCTTG
TTTGTCAGGCAGTACGTGTATTGATGAACCTCATGGTGCTTACAAGTGTA
TTTGTAGGGAAGGTTATTATGGAAGAAATTGCGATCAAAGACCACCGCCC
CCTCCGCCTATGTATGCACCCACAATTCCGCCATTAATGCCATCGAGACC
GCCCGAGCCATGCCACCCTTCACCCTGTCAAAATGGAGGGTCGTGCCACG
CTACGGACCAACATAATTACAAATGTATCTGTTTAACCGGTTATGAAGGG
TTTAATTGCCAAGAGGACATTTGCGCACAATGTGACGTGCATGCGCGTTG
TATACGTGGACATTGTCGATGTCGTCATGGTTACCACGGTGATGGCTATG
ATTGTTATAAAGTACATCCACGACCAACACACGTCCCAAAGATAAACATC
GGTATCCAGTCATGTCCACCACCATGTCAAACTAATTGTGTCGGTTCCTG
CCCAGTTGCTTGCTGCTCCCAACCTCCTGCACCACCTCCTCCTCCCCCAC
CTCAGGTAGTTTTCTCCGCTCCTCCACCCCCACCGCCACCACCTCCACCT
CCGCCTCCACCTCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_161:151179..166441-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049603 ID=TCONS_00049603|Name=TCONS_00049603|organism=Clytia hemisphaerica|type=transcript|length=15263bp|location=Sequence derived from alignment at scaffold_161:151179..166441- (Clytia hemisphaerica)
TTTCTATTGTTTACTATGCTTCGGTGAGCTTCCAGCGTACAACACTTTTC
TTGTGCAAAGAAATTTTCCTCGCTTGCAAAATCCTGGAAAAAATTTGCTC
AAATTAATTCAAGCAATAATTTATTATGTGAATTGTCAGGGTTCAAATCT
CGGAAATTGTTGTGTTTTTTTGTTGTTGTTAAAAGTAATTTTTGAAAAAA
ATGGAATTAAGCCTGGAATTTACGAAGGAAAAATGAAGATGGGGCACTTT
AATCTATTTTTTGTTGTTCTTGTATTGACTTGTCACGTGATAAATTTGAA
CGCGTTTGATTGGTTAGATGGAGGTGAAGAGGGTGTGGAATTTGAACAAA
ATAATGTCGAATACCAAGGTTGGGAAAGTTAGATTTCTACAAAATTCCAA
GTTTCATTCATAGTTCATTAGAACAAGAACAAGAGGATACTGATTTCAAG
AATATATTTGTATCTTAGGTTGATAATATAGAAACTCCACTATGACACAA
TTTTCTATAAGAACCAACAAATTGTTCTAAGGTTTTGCCCATATTTAGCC
TTATAATATAGAAATTCTACTTTAAATTTTGGCTTATCTAATCTATCTAA
TCTAATAGTCCAGGCTAACGTAGAAAGTGAGTATGATCAGTGAAGAATGA
AGAACTGCAGGCATTCCCATCTGATATGTATTGTTGAATTGGATGTTAAC
GTCTATAAAATTCCCGTTTGAGAGTTACCCCCGTCTTTGTGCTTTTTAGT
TTCATTTGATTAGCTTGATTAGTCAGTTTATTGTATTGTGTTTAAATTTT
ATTAAATTTGAATTAAAAATACCCAAAAAATTTTTATTTCTACAGTTTCC
TCTCGTTGTCACCCGAATCCGTGCGAGAATGGAGGTATATGTCATGATAC
AGATGAAGGGATAACTTGCACGTGTGTCCATGGTTTCCTTGGTCATCAAT
GTCAAGGTAATAATATGTTTTACTGTGTTGGAAGCTCTGCCGTCTCGACA
GAGTTCAGTCAAAGAAAAGTATATAAATAGGCTTTTTTCGTCTCTAATTT
CTAGTTCACCAAAGTTTCAAGACTATGTGCCTAATTTGCTCCGTAAAACC
CATTTTCTGTTTTAGACGAATACACGTTTTTTTTATAAGAACGTCAAAAA
TTTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCTAAAAA
TGTTCTTAAAATGTTCTTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTT
CTTAAGAAAATGCATGTTTTTAAGTCTCCAAAGCCTTAGAATGTTCTTAG
AATGTTCTTAAATTTTTGGGCCTCGAAGCTTTATGTTCTTATACAGTTTG
TTCTTATAAAAAAAAACGTGTAACCTTGCTTTCATCACTGATTTTAGAAT
GTTTTTTTCGTCGTTGACAGAAATTGCTTGGTGATTTACCTTGATTTTAC
TGATTTCACTACAGTACGAATCTGGTAATAAAACTATTTGTCGGAAAAAA
AGCGACTAAATCTTATGAAATAAACTCTATTCGGCTAGGGATGATACGAG
ACTGTTATTTAAATTCGAAAGTTTATTAAAACTTTGATTAAAGATTTCAG
ACTGACCTCTCCTTTTTTCGAAATGAGACTGATTTTCTGGTACGTAGGGC
AGGGTTAATGTCAATATATTTATTCTTTATTTAAGAAAAGTTTTAAAGNT
CTCTCCTTTTTTTTGAAATGAGACTGATTTTCTGGTACGTAGGGCAGGGT
TAATGTCAATATATTTATTCTTTATTTAAGAAGTGTTTTAAAGTCATAGC
GTAAACCAGCAGAACATTCCCGTATCCTTTTTTGCGCTGGTGACCCCCGG
AAATACAGAGCATGGTCGATGCCATTAAATATACGCCATATTCAAGACGT
GTTTTAGGTTCCTACCCTTAACCAGCAGAGAATTCCCATATTTTTTTTGT
GTAGATGACGTGGGGCAGGGTTCATGTCAATATATTTACTCTATATTTAG
GGAGTGTTTTATGTCTAAGTCTAAGTCTAAGCAGAGCGAGCATATTCCCG
TATATTTTTTGCGTAGATGACCCCGGGTACACAGGGCAGGTTTGATGCCG
TTATATTGAGGCCATCTCCAAGTTCCTTGGTCCAAGGCATACTATGTAAT
TATCAAATAAAGATTCATTACGATTTTCATAAATTATGTTAAAACTTTTA
CACTCGTAAAAAATTCAGCTAAAAATAAATCCTAAAGAAATTTCTATTTA
CAAAAATTGAAGATTTTATATTTTTATATATTATGAAAATTAGTATCATT
TAAAAATTGACACTTGAAAATCAAATGTGTTTCACCTACCTAGTATTCAT
AAAAAAAATCTTATCTTTGTAAACCCACCAAAAGTCTATATTTCGACACT
AAATTGTTATTTTGAGAGTCGACAAATCATTATACGTTTGAATTTTAAAG
AAATCTATTTGACAGAACTAATCGTTAAATTTGACACGGTCTTTCTCCGG
TTGGGGTTAAAATATGGCGGAAATATTGAAAACAATAATAAGGAAGCATG
TTTTAACTCCTCACATACACGCTTTTCTATGAGAACATAAAACTTTGTTG
GCCAAAATCTTAAGAACAATTTAAGAAAAGCTTTACAAACTCTATAACAC
TTAATTTCTTAGGAAAATGAACAAAAATACTCACAATATGATGAAAATAA
AACATTTTTAGGCTTAATACTCAAAAAGTTCTAAAAGCTTCAAAATGAAT
GTTCTTATAAAATCGTATATTGACAACTACGGAGCTAAAGATATTGGACA
AAATTCAATTCAATTCACTCTTCAATTAACGGAGAACAGCATTTGGGAAA
AACAAAAATATACTGATAATTAAAAAGAGACCACCTTTTTGGACCTACCT
CCGGGTGCCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCTG
TTCGTCCGTCCGTCCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGG
ATTGGCTCATTAGTTTTTTTTTGATTTTTTGCACAATGATGCAAAATGGC
AATACCCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATTTGGG
CAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTTT
TTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGT
TGCTTGTTTTAGAAAGTTTTTAAAGAAGGGCTTGTTAATATACAGGAAGA
TAATTGTGTCTTCTTTTTCAAAGAAACTATTTGCCTTTCGAAGTATCAAC
TAATTCAGGTACCCGGGGTGGGTACTACCCTTGCCGACCGACGGAGGTGT
GCCTCTGAAGTTCGAAAAATGGACCCTAAGTGAGACTAGTTTTTGCGAAA
AAATGACACTGAATGGGACTGAAATTCAAAAATACCTTATTGGTATATAT
TTTCGCGTGTTACAAATTTTCGCGAATCGCGAATTTTTTTCGAAAAAACG
TGTTTCGCGTGTATTAACTGGCGCGATTGCGGGCTATTGTAAAATTTTCG
CGTGTATTAAATTTCGCGATTGCCGACTTCTGAAAAATTTTCGCGTGTAT
TAAATTTCGCGATTGCCGACTTCTGAAAAATTTTCGCGTGTATTAAATTT
CGCGATTCACTAAACTAGGTATTTTCAGAAAGTGGGAATATAAAGCAAGA
AAAAGACTGATTTTGCTTGGAACACAACGTTTTTGATGTAAAAATACTAA
CAAAATACTAAGAAAAATTTTTTCGCGCGTATTTAATTTCGCGATTTTGT
AATTTTGAAAAATTTAAACAGTATTAAATTTCGCGAAAATTGACCAAAAA
ACTCGCGAAATTAAGTACCCGCGAAAATTTGTAACACGCGAAAATATATA
CCAATAAGGTATTCTCATAACTTCCCACTTTTTTCCCAAATTCCCCCAAA
AACGTACCCTACTAGGGAGGAGGTGAAAAAAAGTACCCTGACCAGCGGCA
CATCCCCGTACACCCCGTCTTGCCCAAGGGTTTGTCCTATCAAATACCAT
CACTCTTTAACTTCAAATCAGGTGCAATCAAAATGGCGAAGAACAGACTG
TAACTGCATTTAAATTAAACAAAGTCTTTTTTTCATTTTTTCATCATTGA
CTTTTCTCCCTGTTCCTTTTGTGCTCACTTATCGAGCCTACCAGTGCTCG
CCTACTCGTCGTTGCTGCCTTGATGACCCATGTCAAAAGTACTGTTGCGA
AAGACATCGAGACTAATTTGACTTCATCTGTCGACTGTTTGAGTACAGAT
CGTGTCGACTTGAGTGGCTCCTTTGACGCCATAATCGGCGACGTGGGGAC
GTCTTTAATCTCCTTTTCGACAACTTGGACGATCGGGTTCCGTTCCGCAG
ACGTGACGCCGATTAAATAATACGTCAACGATAAAAATCCTTTTATGATA
CCCCTAGCCGTGTATAGAACCAGATTTTGGAACGTAGCGTTTGTGACAAG
AACGTACAACGTAGTCAGAGCATCACGTAAGATGAATAATATACATTTCG
TAAGTAGACGTAACGCGTACACAGCCGTAGGTCCTGCCATTGTTTTTAGG
GTGTTGCCACTAAGCGCTAAGATCGCCATAAGAATTTTTTGTGGTAATTC
AACAAGCAAATCAAGCGAGCAAGTAGAAAACTATGAATACCAAGTTAGCC
AAAAAACTTTTCCGACTGTTTAGTTGTATATGTTGCCTTTGATAACTAGC
AAATCTCCTCTAATTTCGATTTCCAATTTTTTTTTAATCAGCGTGTAACA
AGTCCAAACGAGACAATCTATATAACAAAATGGACTATGTGTGAACTTTC
ATTTGAACTTTCAACTTCTTATTTTTGATACTTTTAATGTTTTTTTCTAC
ATTCAAAAAATGAATTTTGATGATAGAACAATATCAAAAGATTTGACACA
TTCTTTTTATCGGGGATATTGATTACAGGCAGGCAAAGTCCAATCCAGAA
AAAAATATGTTTTGAAACCTGCTACTATAAGAATTATATAAGTACCAATC
TTAAAATTACATCTTAATACATTCGAAACTTGTCATCAGTCAAGAAATAT
CCATTTGCCCAAACTATCACTATATCAATTTCTGCCAACTATCACTTATA
GATATATCAAAATTTAGCAATATCAGAGAAAGTCGAAGTAAAAAAAATCA
CAACACCAAAATCTCAACTCTCCTAGTCTTTTGCTTACACATTTCTCATT
CGTCGTGTACTTGCCCACGTGATTAGAATTTGTGTCCTATATCAATATAT
TTTAGTTTAACGATGGAGTACTTTTAACTTCCTCATTTGTATATTATTCT
CGGGTACATAGTGCTCTCCCACGTAGAGGTGTCGCATATTTATTTCTCAA
CTTTTCTATCGCTTTAATCATTAATGTCAAAGTTCAAAGTCCAGTTTTCC
ACTAGACAAACTTAGACAAACTTTTCCCTCTTTCTGTTGTCGTGGTGACT
ATCAATATATTAGTTTAAAACGCTTTTGCGGCCGTCAACGACCGTACTTT
AGTAGCTATTGCGACCGTAAAATGATAAGGTAGAGCATCCAGCTACGGTG
TGCAAGGTTGTGGGTTCAATCCCAACCGGGTCATACCAAAGATTCCCAAA
ATGGTACTTGATGCCTCGCTGCTTGATGCTCAGCAACTAAAGAGACGGAT
CAAGGGTGTAAGTGAAGAAATCCAGGGAAAGGAGTGGCGCCCTCGCCTTC
GGGTATTGCTGGGAGATGATTGACAATTCACATTTAAAAATGCTCTGAAA
ATAGCAATTATAGGTTCTGTTAACAAATTCCATGATGGTGGGTATTCTTA
CCATATTCTTAGCTTTTTGGTCTATTTCGGAGTTGAGAAAACGGTATATT
GGAAGTTTACGATAGTATCAAACCTTCAAACTGCCCACACAGAATTATTT
GTCTTTAAATGGAAGTACGGAAATCCAAATCAAATATAGAATGTAATTAA
AGCTTCTTAGGAACTCTTATTTCGCAATAACATACTTTTGATCAATAATT
TTGAAATAAAATTCAAACTACTCAAATTTCCATCCATATTTGCGGTGGAG
TACAGTTGAACTCGTGTAATTCGAACTCCTATAATTCGAAAACTCACTTA
ATTCGAACAGATTCTGTGGTCCCCTCAGAATTTACCTTGAAAACCTTACA
AGAAAACTCCTATAATTCGAGCTCATGTAATTCGATCATATAAATCGAAC
AGATTTTCTGGTTTCATCAAGAAATTTTAATCATGTAATTCGAATTTTCG
AATTTTTTTGAGTTTTTGAAGCTGACAAACTTGACATTTTGTCAATCGAA
CCAATTCCCATTCCACCCCAATCTCAAAATGAGATTGACGACGCGATCGA
GACTCTCAAAAAGATGACCATTTTTGAATCATCGAACGTCATCCCACTGA
TTCAGAAGATCTCCGAAGAGATTTCCAAGAGATGGAAGCAGAAAATGAAA
CAATCAAGAATCAAAGATTTTTTTGAAAATTTATGAATTTAGTATGTTAT
TATTTTAACTCGAAAATTCAAAAAATTGTTCAAAAGTAAACCCGGGAAAG
ACTTTTTCATCGAATTAGGTCAAAAATACGAAAACTCATCTAGTTCTAAA
CTCATGTCATTCGAACAAAATTCTCGGTCCCTTGAGAATTCGAATTACAT
GAGTTCAACTGTATGTCGAACCTTATTATACCAGGGTAGGTGACAATCGG
GAAAAAATGAGCAACGGGAATATGCCACGGGTCAGGGGACCCTTTTTCAA
GATCCGAGAATAACTAACATGATCACAAATTCAATAAAAAAATGGTATCT
GAAAAGGTCGTATTTTAGGAATACTTTTCAGGGTGGGTTTGGAGTTCTGT
CAAGGTTCCAGAACTTGTTATTCTGTTAGTGTATAAAATTCGTCGATTTT
CTGCATGACAAGGTTGTTTTCCGACAACATCTAATATTTTTAACTTCAGT
GTAACACGTCCCTGTCGACCGTCAAGTTTGCGATACACTCTGACACACTC
TGACACAGGAACATACTGTTATAAAGTTAAAGGTGTGCACCAATTTCTTT
GCAAGCTCTTTGTAATTCATTAAGAATTCAAAACTGAAAAAAGAATACAA
AAGAAATAAACCAGCCGAGGCTGGAAGGTCAGCCAATAAAGCTTAGCTAG
ATAGCTTTAATAAGTGGGCTAACAGATGTAAGAGATGTACTGAAACAGAG
TAGACTAATAATGTTGAATAATGTACAAAATGTGAAACATTTGATAACTT
GATTTAAAATTATTTAAAACAAGCCTGAGAGCTCCTCCAACCACCCCTAG
TAGGGGGAAATTTGTAAAATCGCTCGATTTTTTTAGTCGAAGCACTTGTT
ATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTTGGGTGC
CAATTTTCTTTCGGACACTTTGGTGTGATTTTCGGACAAATACGACGGTC
TCGGGCAAAGATCATAGAGTGAAAAATTAATGAAAATTTTAGCTTGAGAA
AACGGAGACCTGTTGTATGTTTTTGGAAAGCTCTCAAAAAATTAAGATTA
GTGATATATTGCGAGTATAGGTGATTTCTGTACCTAACTCGAGATATTGA
GCTTCCGAAAGCGCAAAAACTGGACAAAACAGCTGTTTCTGGCTGAAAAA
CACTGAAAAACACTGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCACCCGCCACTAGAAGCTCAAAGTATACTTCTCTTTAT
AGCATTGTAGCACTGTTTCTATGACATCAAACAATTAAGCTATAGTTCAT
TACTGTAAAATAAAAGAGAAACATANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAAGTTAACCCGATCGGAAGAAAGTTTAGAAATCAAAGTG
AGATCGGGAAATCGGATTTTTTTTTTGCCGTCTTATGGAAGAAGAAGAAG
AAATGAATTTTACCTATTTGAATGCTCAGCTTAGGCTGACCAAAAATAAA
TAACTAATAAATAACTTGAAAAATTGATATTGATTGAAAGTCTAAGTCTA
AGTTGAAAGTATAAGTGTGAGTTGAAAGTATAAGTCTATGAAGTATAAGT
TGAAAGAAAAATGTAAAATATAAGTCTATTTACCAGCATGCCAGGAAATA
TAGTGGTGAGAATCCTAGACAAAATGAAGAGCTTGAATGAAGTATGCTTG
AGAGCTTGAATTGAGATTTGATTTGAGTTGAATACTGATTGATGTTCCCA
ACTTAGCTTAAGAGTTAACTGGAAGCCATCTTGAATTGAGTTGAGTTGAG
TTCAGTTGAAAGTTGAGAGTGATGTTAACTCCTCAAAAGCTAGTTGACAA
CTGATGACAAAAAGCAAAGTGCTGGTTTTGTGTCAAAAAGCAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGTAAAATGCAGAACAAAACAAAGGACAAA
GACCAGAACAAAGTGGACATGCATGAAAACTTCCAAAATGTGTCTAGACC
CTTAAAGAAAGCTCTGTCCACATGTGACAAAAAAACAGAAAGACACTGAA
AAACAAGGAAAACTTAAATTTGTAAATTTTTGTAAATTTTGAATATAATA
AAATAAAATCAAGAAGAACACAAACATGAAATTTTGTATTTCACAAGTTT
CTCAGTTTACACATACATTTAGAACACTATTTGTATTGTCATTTCGGGGT
ATTCGTAACTATCCCTACAGACTATCTTCTATGCTATATAATGAAATGAA
ATTGATTTGAATTATGTGGACCAGGACTAGAAGACTTTTATCATTGTAGC
CCACTGACCTTTATATAAACCCTGGAGGCAGTTACTCAATCTCGGCCAAG
CAAAATCGGAGTTTTTTTTTGAAAGTGGTATCCTAATGGTACTCTGTACC
AGAGCGTATCTCACGATTATCGTAGGGTAGTGGTAATGAATTTTGAAATT
AGCCGTAGATATCGGGTTTGTGTACAGACTACCCTAATGGCAGCAATACT
CAATAGCGGTGTAAATGTATCGAGAGCGCTAGATCTACATTTCCTTGCAT
ATTTTTTATGATGTAGCACCATTTGACGTTAAATCTTAACACTGTAATCC
CAATGGCGTCTTTGCGGGTACCACTTAAAAGAAAAACACAGATGCAGGAT
GGTGGCTTTGTCTAGAGTTCATAAAGGTCATTGTAGTAGTAGCCCCACCT
TTTTATCCTTTTCCTATTTAACTTTTTAGAATCGAACCCATGCTTTTACA
ACCCATGCCATAATAGCGGACGATGTATCAGTGAAGGTCATGGAGAATAT
TCTTGTGATTGTACGGCCCCTTACGGTGGCTCACATTGCGAAAGTAAGAC
CCTATTTTTTATAACTTAAGGGAAAACCTTGGGATGTGTTTTTAAGCGGG
CGCTGTGAACTGTACTTCAGTGGAATGTAGAAGTATTTTATGACGTTTTG
AGGAAAGGGTAAAACGCGAACGAGGTTAGCTCGTGAATGTGTTTATTCTT
TACGAGTTTATTTTCTCAATTTTCGAGAAATTGAATTATGAAGCCTGTTT
AATTGTTGTTATACCAGCCGTAAACCCTCAAATTTAACGCCACTAATTTA
TCCTTTAGCGAACCATATCTTTGTTGTGAGACAAGCATAAAGCCTGGAGT
ATCTGCTATTTGCATCGTTCGGTCCTCAAATTATATTGCTGAATATTGTT
CGCCAATATATTGTGCCGTCCTTGTGACAGGCACCGACACACTGAAATTT
TCTATTATTTTTTACGAGTCATTCTCTCCATCCTTTCTTTCAGTTCATTC
GATGTGCACACCAAACCCGTGCCATAATGGCGGCGTTTGTCACGTGATGC
GTGAAACACAATCGTGTCATTGTCCAACACGTTTCACAGGAGAGTACTGT
GAAGGTGAGACTTTTTTTTAAGGAAAAATATTTTTTTATAACACACCCAC
CAGTTGAAATTCGACTGAATTATGTATATGATTTATTCTACTCGGTAGAG
TAGAGATGAGGAGCGCAAAATTTGCGTAGGAGAGCGTATTTTGATAACAC
GGTAATTATCTTTTTATATCATGAATGGTTAATAATCTGCTCTCCTACAC
AAACTTTACGCCTCTCTCTGTCTACGCAACTGAAGCCCCTTAATCTACTG
GTCTTTTAATGAATTTTTTCCCCAAAATCATGATCTAAAGTATTATCCCC
GAAAATTGCAACAATTTTCAACTTTTAGTTTGAATTTGATGTCATAATAA
GAGAATACCCTTACCACGTAGCTGCTTAGCTGCCCCCGGGTCCTCCTGGA
CATAAAGGTTTTGTCATTTCCGTCATACAAAATTCGCTCGTGTTATTCAA
ATATCAATTTTTTACTCGATTTTACCTATTTTTTTTCTTCAGTGGATCAT
TGTTCTCGTTGTGACGCGAACGCGTTCTGTGACAATGGGGATTGTCGTTG
CGATGAAGGTTATGAGGGAACTGGATACGAATGCCACGAGACTCACGAAT
TGCATCACCATCATCATCACGTCGAAGGTAATATTAAATGAGACCAAGTT
CTGCCGTTTAAGGTTATTGTACAGAGTTTTCAAAAAGGGCACTCGTGGTA
ATAGTGCCGTAGCAGTCTCATTTAATATTTACTCAAAGAAAGTACTTAAG
CATATTTCTGTTCCAATACAATCTCAATTGTTCTATTACAAGCAAAGTAA
TATTTCTCAAAGCCTAATTGTGTAGTGCAATTGGAAATCTTCAGACCTTT
TACTGCAGCTCTGCACTACTCCTTTCTTTTTCTATTTTCAGTACCAATTC
TTCCACCCCCTCCGCCACCGGAGCCGCCCCGCATGTGTGACCAAACACCT
TGTTTGTCAGGCAGTACGTGTATTGATGAACCTCATGGTGCTTACAAGTG
TATTTGTAGGGAAGGTTATTATGGAAGAAATTGCGATCAAAGACCACCGC
CCCCTCCGCCTATGTGTAAGTTGATAAATAAGTAGCGAATATCTCGCCAA
AAACCAGGATTTTTCATTCCGTTTATTGTGTAGTAAAAACGCGGGTGACG
TCTTATATAGACTAGATTAAAAGTAATATTTTTTACAATTTCAGTTCAGG
GCTCGAATTCGCTTCCGACGTTAGAGTAAATACATTAGTATTTTAATGGT
ACTATTAGTTGCTTAGTCTTCTCGAGGTGTGGTACGGTATAAATTGGGTC
AGTAATAAACAGTATTGGTGCCGAAAACATGCTATATGGTCTAACACTTT
CTCCAAATCAAATAATCTCTAAGGTGATAGACTGCCAATCGGAGCGAAAA
AATGCTTTTAGTTTTGAAGTGGTTTCTAGTCGGAAACTATACGGCGTCTG
TGCGCAAACGTTTCTTCGAACTCTAAAAGGCAATTTTTTGCACTAACCAT
GACTGTCATTACCGGCTGTGAACTCTTCTTATCTTATATTTCCTGGTCTG
CGTTTACTTTGTCTGTAAACGGTTGATAGCATCGTCAAGTAATTTTTCTT
GCATGATCAGTTGACTCTTACTAACTCGAACTCGAACGGGGAATCTGATT
TTTTGTTCGAATTACAAAGAGATTCGAATTATAGAAAGTATTTTAAGAGG
TTTCTCCTTGATGGGGACTGGAAATTGGTTTGAATCATAGAAAGATCGAA
TAAGCAAAAGTTTACTGTATTTTTTATTTCATAATTTGTTCAGATGCACC
CACAATTCCGCCATTAATGCCATCGAGACCGCCCGAGCCATGCCACCCTT
CACCCTGTCAAAATGGAGGGTCGTGCCACGCTACGGACCAACATAATTAC
AAATGTATCTGTTTAACCGGTTATGAAGGGTTTAATTGCCAAGGTGAGTT
TGCATCTACATCTACTACACGCCCCTAAATGTCTCAGTGACCTGGCGAAT
AAGATACTCTTAACGTGTATAATTGAACATTCTTTTCTGCGGTCAATAGA
CAAGATCTATCAAAGTTTTACTGAAATATCTTTTTTTTTCCTGTACAGAG
GACATTTGCGCACAATGTGACGTGCATGCGCGTTGTATACGTGGACATTG
TCGATGTCGTCATGGTTACCACGGTGATGGCTATGATTGTTATAAAGGTA
CATCCGTATTATATCATCAAAACGATTCGTGTATGGTCTTAAGTATTTGT
TAAGNATCGTCAAAACGTTTCTTGTGTGGCCTTAAGAATTTGTTAAGTTT
GCTGTCTACTAAAGACTGTTCCAAGGAATTTGCGTTTTTAACATTGCTCT
CGAGGGATGAAAATATTTCAAAAAAAATAGTATCTCATTGGAAAGAAAAT
TGTAAGTGGGTTGACGTAAGCTTTTAATGATTTACTAAAAATTTAAAATT
ACAGTTAATAACATGAAAGCATCTTTATTGTTAGACTTTAAGTGAATTTT
AAACTGAACATCGTTACACAACCTTCATACATATACATTTTTACTTTTCT
AATCTTCAGTACATCCACGACCAACACACGTCCCAAAGATAAACATCGGT
ATCCAGTCATGTCCACCACCATGTCAAACTAATTGTGTCGGTTCCTGCCC
AGTTGCTTGCTGCTCCCAACCTCCTGCACCACCTCCTCCTCCCCCACCTC
AGGTAGTTTTCTCCGCTCCTCCACCCCCACCGCCACCACCTCCACCTCCG
CCTCCACCTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031449XLOC_031449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049603-exon-scaffold_161-1575043694:166074..166441TCONS_00049603-exon-scaffold_161-1575043694:166074..166441Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:165486..165596TCONS_00049603-exon-scaffold_161-1575043694:165486..165596Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:154499..154612TCONS_00049603-exon-scaffold_161-1575043694:154499..154612Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:153938..154048TCONS_00049603-exon-scaffold_161-1575043694:153938..154048Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:153315..153449TCONS_00049603-exon-scaffold_161-1575043694:153315..153449Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:152877..153050TCONS_00049603-exon-scaffold_161-1575043694:152877..153050Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:151999..152148TCONS_00049603-exon-scaffold_161-1575043694:151999..152148Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:151745..151843TCONS_00049603-exon-scaffold_161-1575043694:151745..151843Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1575043694:151179..151382TCONS_00049603-exon-scaffold_161-1575043694:151179..151382Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:166074..166441TCONS_00049603-exon-scaffold_161-1510915933:166074..166441Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:165486..165596TCONS_00049603-exon-scaffold_161-1510915933:165486..165596Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:154499..154612TCONS_00049603-exon-scaffold_161-1510915933:154499..154612Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:153938..154048TCONS_00049603-exon-scaffold_161-1510915933:153938..154048Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:153315..153449TCONS_00049603-exon-scaffold_161-1510915933:153315..153449Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:152877..153050TCONS_00049603-exon-scaffold_161-1510915933:152877..153050Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:151999..152148TCONS_00049603-exon-scaffold_161-1510915933:151999..152148Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:151745..151843TCONS_00049603-exon-scaffold_161-1510915933:151745..151843Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1510915933:151179..151382TCONS_00049603-exon-scaffold_161-1510915933:151179..151382Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:166074..166441TCONS_00049603-exon-scaffold_161-1491911889:166074..166441Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:165486..165596TCONS_00049603-exon-scaffold_161-1491911889:165486..165596Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:154499..154612TCONS_00049603-exon-scaffold_161-1491911889:154499..154612Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:153938..154048TCONS_00049603-exon-scaffold_161-1491911889:153938..154048Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:153315..153449TCONS_00049603-exon-scaffold_161-1491911889:153315..153449Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:152877..153050TCONS_00049603-exon-scaffold_161-1491911889:152877..153050Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:151999..152148TCONS_00049603-exon-scaffold_161-1491911889:151999..152148Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:151745..151843TCONS_00049603-exon-scaffold_161-1491911889:151745..151843Clytia hemisphaericaexon
TCONS_00049603-exon-scaffold_161-1491911889:151179..151382TCONS_00049603-exon-scaffold_161-1491911889:151179..151382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:151179..166441 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191835	0.0842455	0.121891	0.236224	0	0	5.34966	9.29949	1.64669	4.22962	7.37488	3.91479	4.81578	5.84478	4.02147	11.7837	3.85779	3.71953	0	0	2.14328	1.42051	2.72028	1.87266	2.37082	3.20599	0.396372	0.736808	0	0
Blast
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BLAST of TCONS_00049603 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 7.281e-24
Identity = 52/147 (35.37%), Postives = 72/147 (48.98%), Query Frame = 2 
Query:  380 CHPNPCENGGICHDTDEG-ITCTCVHGFLGHQCQES-NPCFYNPCHNSGRCISEGHGEYSCDCTAPYGGSHCEIHSMCTPNPCHNGGVCHVMRETQSCHCPTRFTGEYCE--VDHCS--RCDANAFCDN--GDCRCDEGYEGTGYEC 796
            C  NPC+NGG+C+ +  G   C C   ++G  C+ S NPC   PC   G C+ + +G + C C   Y G  C++   C   PC NGG C    +   C C + F GE C+  +D CS   C   A C+N  G   C+  +E  G  C
Sbjct: 4017 CASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVVD-NGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTCFDSLDGAVCQCDSGFRGERCQSDIDECSGNPCLHGALCENTHGSYHCNCSHEYRGRHC 4162
The following BLAST results are available for this feature:
BLAST of TCONS_00049603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT17.281e-2435.37Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 S... [more]
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