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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049601 ID=TCONS_00049601|Name=TCONS_00049601|organism=Clytia hemisphaerica|type=transcript|length=334bp
GAGCTTTTGAATTCAATGTTAACATAGattgaaaataaatttgcaataaa
aatGGTATTGAGTGAAGTCACAAAATCTGTGTGTCACGTGGAACGAAACT
TAAAATGTTTGAAAGACATGCCAAGGATTTCAGTTCAAAACATTCGTGAT
TTTCGTGGTGCCTTCAAAAAGAAACAACGTGTTGGGCGTGGTCCTGGTTC
AGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAG
GTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGA
TTGGTACCAAAACATGGTTTCACTAATGCCAAGT Run BLAST on NCBI transcript from alignment at scaffold_161:114586..123667- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049601 ID=TCONS_00049601|Name=TCONS_00049601|organism=Clytia hemisphaerica|type=transcript|length=9082bp|location=Sequence derived from alignment at scaffold_161:114586..123667- (Clytia hemisphaerica)
GAGCTTTTGAATTCAATGTTAACATAGGTAAGAGTTTCATCATTTTTAAA
GTCAAAATGGCAGATTTTTTCCTGAAATGAAGAAATCATGAAATGTGAAA
TGAAATGAAGAAAAATGTGTTCTTCTTCTCCTAACTTCTTCTGACTATTT
GAGTGATTTACTTGAAATCTTTTATCGTTAATCGTCCTGGCTTACTACTG
AGGTAAAACAGCTTTCCAAAATAGGTAATAGTATTTATTTGAAACTATCT
TATCTTAGTTTTATACAGTATATATTAGCCATTCCAGGTTTGCTTGTTTT
TTATTTGACGCTCATGAAAATCTTCAATTTTAGGTCCAACTTTGACAAGT
AATTGTTCTTTGTGTAGTTGAGCTATAAAATTAATATTTTTTTGAGTAAT
TTAGAGCTTTCTTTAAGCTTTCCAACCATATATAATATGCAGGTGTTTGT
AATATTCTATACTTTTGTCTAAAAATTCGTTCCAACTAAGGCCATTTGCA
GAAAAATTAGATCTGCGGGACACGAAAATACCTGAGAAATCCAATAGACC
TTTTCGCCTTTCCATCCGCCATCTTGAATTGTATGCAAAAATACAGGAAC
GAAAATGCCGTGGTTGGATTTAGTTGGAAAGTATGCAAAGCATATGCAAG
TTTACTCAAAGATTAAAAAGACTACAAAGCATCTCATAAATAAATATTAT
AANTAAAAAGACAACAGAGCATCTTATAAATAAATATTATAATCATTAGA
ACAATAAAAGATGGAATTTTTTAATCCAAAAAGAAATATTTACAGAATAA
CAAAAGCCTTTTAGAAATTTGTTCTTAAAGACATAGCATATTTTGTTTTC
ATGCCATAAAAAAAATCCACAAAGACGGAGTACACACATCAATCTTTCAA
AACACGCAAACTGAAAGCAGTAATTATGACGTCACACATCATCAATGTTT
TGATTTGATCATTTTTGGCGGCTCTATTCCCAGGAGAATAATTTACCGTC
AGCCGAATAAGGATTATTTTTTACCTTTGCGGATGATTTTTCAGTTTGAG
TTTATGTCTAATGTTGTGGTTTTTTGAAGTGCTTGTTCTAAGAGATGAGT
GAATATAATAGTTTTTAGTTTTCAAGAGAAGCAAATTCAATCTTTCTTCT
ACAAGATTACACTTTAATATAATGCCAATTATGCATGTAAGTTTTATATT
AATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGGAATTTCACC
ACGGCAATTCGGCCACCATAATTTTTGCATACAATTCAATATGGCGGATG
GAAAGGCGAAAAGGTCTATGGTGCTACTCTCTGAAATTAATTCTTTCATT
AAAGTTATTATTTTTTACTTTTCATACTTTGGCAAGCATTTTCAGCCTGA
AAATGAGGACTAGAATTATAGAGACTGGTACCACTGAAAAATTTGACCCT
TTTTTAGCCTAAAACAGTTATTTGCCATGGGGAATTTTTCCTCCACAGCG
CTTTGATTACAAAGATAGGTAGGTTCAGCAATTTTAACTTCCACTTTATA
ACGTTTTTATTGTTTTTTGCAATGCAATGTCTTCTTTTTCAAAAAAATGT
CTTTTCAATTCTTCCTTGAAGTGTTAGCAAGCCATTACAAAAAGAATTTG
ATAAAAGTCTGCAGTCAAAATGAAGATATCTGGATTTTTTTTATTGGATT
TTGAAATTGGAAAAGCATCAAAAAGTGTATATTTCGGTGCCATTTTATAT
GCCATTTCTGGGCTAAATTTTCAACCTCAAATGTCTAAAACAGTGCTATT
TTAGCGGAACCAAAATCTAAATATCTCCGGAACCGCTTATCATTAGGAGG
TGTATGACCCCTCATTTTTTTTCTTTTTTGAAGCTCTACAAGATGAACTA
GGTTTAATTGCCACCAGAATAGTTTCAATTTGACCCTGGAATGGCTATAT
ATATCATCGTGACTTCGTCTTCGTGAGAGTGGGTAACTTGCATCAGTGTC
GCTAACATGCACAGCCCTCAAATGAATGACCTGTCTGGTCATTAAAATAC
AAAGTTAAATCAAAACAAAAATGGTAGAGTAGAGCTGCAAGCGGAGCTGA
ATATAGTTTATTTTAATGACCAGCCAGGTCATAGACCTTTTTTCATCAAA
GAAGCCACCCTTGTTTTTATGGCTGGACTACACACGACCCGTGACTACAC
AATTATTCAACAGGACGCCCTCTTTGAAAAAGGTCTATTCATTTTAGGGC
TATGCACGTAGCCTCCACTGACGCAAGTTACCCACTCTCACGGTAGTCTA
ATGATATTGTCGATTGACAGTCAACCTTCTTCTAAATTTTGACACCCTTC
TTTAGAGATAGGAATAATAAGAAGGTTGGAATCACTGATAGACTCAAGAT
TTTTTCCTCTCTGATTGCTGAGCAAAGAAGAATATAAGTTTCAATCAGCG
AAATCTGACCTAGTCATATTATTTATATTTCTATATATAAAGAAGAGAAT
GGGTCATTCCAGAATTTGTCTGTAACAGGGGGTGAACAGGATTTTTGAGG
CAAAAGCTTTCACCAAAATTCAAAATTTCCAAGGTGAGAGAAGAAAATGT
ATTAATTTCAACGGCAATTGAATTAAAAACTAAGGTGAAAAAGGCTTCTT
CAAGCAAAAGACATCTATCTCTTTTTTGAATCCGGCATGCAGGAATAGTG
TCAGGACACCTGCAGGCAACCTGGTAGGGTTAGGTATGGGTGTGTTGTGA
TTTTCTCCTAATATAGCCTGGTCTGTAGTTTGTACAATATAAATAGCCGT
CAAAAACACTTTCCTGGCATGAATCTGTGGCGCATTAGGACGAATGTGTT
TTTTAGGACGAATGTGTTTTAGCAAATACGCCGGTCCAAACAATTCAAAA
TTACGCGACAGTACCCTGACTATACAAGGAGCAAAACTTTTCAATGCAAT
GCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACATGAAATCTCT
CTGCTGATCCATTTTTTCCTTCAGGAATTATGGATTGAATGAAGATTGTG
GTGTGGATCAAAAGATTCTTGCCAGAGCGGTACGCTTAAATACATCCAAA
AGTATCCAGTGGTTAAGGCATTGGGTATTAAACATCGGAACTTTGCATTT
AGTTCGAACCCCACCGGTGGCAATCTTTCGGTAAGTCATTTAGTCAGTCA
GAAAACATAGAAAATAACTCACAAAGAACCAGAAAGTCAGAAAAACTACA
AACAAGAGACTGGAAAGTACGAAATAAGTTCAGATATGTTTTTCATCTTT
ATGAAGAAGCCACAACTAATTAAAAAAGACATAAAAGAGTGGAATTTCCG
ACACATTTTGCGAAAGTACATGGATTTTCATCAAAATTTCCGACCACCAC
TGGAAAAAAAATAAATTCTGAGGTTAATGTTAATGCCACACAGGAACTGA
CATTAGGAATTTGTACTCCTCAATAAACATATATTGTACGGCTAAAACAA
AATAGCACAAGAACTAAGTTACAACTTTATCCTTGACAAAATTCACAAGT
CCTAAGGTCTGTATTAACTAAACATACAAGACATGCAAAAGCCTGTGTAC
AAAGGTACAATAATACAATGTAGACAAGCATAGAAGAGAGACATGTAAAT
GTCAAATTGTCAACAACTGTAAATGCCAGTCAAACATATGACACAAATTA
GCATTTTATAAGTCATCTTAACGCGTCATCAACATAGATTGACAGCTAAA
AAGAACAATACAAAATACATCAGAAATTGAACAAATACTATGCAAAACAG
CTTTAGAAAGATACAAAATAGAACAATAATAGATAGACTAACAATACTAA
AATACTTTACAATTCCCAATACAATTGACATAAACTAATACACATGAGAC
ATTAAGTAATAATGATTAAGTGACAGTTATAAACGTTTTACATACAAAAT
ACCTTTCAAAATGGATTTACAAACAAACGCTACAGAACAAAAGATAAATC
AAATAAACGTAAAATCAAGAGCCTGACTGGCAGTAACAGTTAAAGAAAAT
TTAAAAATGCACGTCGTCCAACGAGGGGTAACAAAAATGTGGGCTTGAAT
CTGATTTCAACAAAAAATGGGTCGTCCGCCAAAAATAATTCTCGCCAAAT
TTAGAAAATTCATTAAATCGCCAAAATAAATTCCTCCAAATTGCACAAAA
AATGGACTAATTTGCCAAAATTTCTTCTCAGTCTCACCAAAATTTACCGT
TACAGGGAAAAAAATAGCATAAAAATACTGTAAAAATACTAAAAATACTG
ACTAAATTTTTTATGATCAGCTTTAAATGGGGGAGCTATTGGATTGGTAT
TGGATACGGTATGAAAACCAAGAAAATTAGACAATCTTGGAAATCTTACT
TAAGGGAAATACAGGCTAATAGAAATTTTTGTTTGAGAGGTTTAATGGTG
TCATAGTGAAATCGTAGTGTAATACAACAAAGTTTTAGTTTCAGAGTCAA
TGTTCCTAGAGGGAGACTTGATGTTTGGATGATTAATGATGAAGGGATAG
GGGTGATAAAAGGAGAGGTGGGAGGGAAGGCAGGCTGCATCATTTGAGGC
TAAAATGTCTGAGGAGTGCGATCAATCACACCCCATAAAGTAAGTTTCAC
AACTGAAAGTTGTGCATAGCACTCCTTATCACACGCCTAAATTACTAAAA
TTAAGGTTTTAGGAGTGTGATTGACCACACACCTGAAATTTTCAAATAAT
GCAGCCTGGGAAGAGGGGGAAAGGTTATTATCAGAGGGTGGGTGGGGTTT
AGCCAGTGGCGAGCTTGGTAAAGGTATGCACGTAGGTGAGCTTTAAAAGT
GGGTTTGCTAGTGATTTGGTCAAGGGAAGGTGATGAGTGTGTATTTTGTT
CCAGTTTTTTGTGATGAGATTTGCTATGTTATGGCATGGTTTCAGCCCAC
TTTTCAGGTGCCCCCATTGAGTTTTCCTTATGTATGGGTTACTTTCCACA
GCAGAAATTCGAGAATTTTGTTTACTAGCAGTTACCAGGCCTATAATGTA
TTGGTAAATATTCATTGTTAAATGAAAGTGAAAGTAAACAGAATTATTTC
TTCACAATGTCACAAAGTTGCATAGGAGTGGTGTCTTTGATATTTCCACC
CGAAAATGGGGGTGGTACCTGAACTTTTTTCCCGGAAAATAGTTACTACC
CTGGTGAAGTAAATGCAAACAGGGGTGGTGCCTAAAATTTCTTTCTGAAA
ACAGTTACTACCCTGGTGTAGTAAATGCAAACAGGGGTGGTGCCTAAAAT
TTCTTTCTGAAAACAGTTACTACCCTGGTGAAGTAAATGCAAACAGGGGT
GGTGCCTAAAATTTTTTCTGAAAACAGTTACTACCCTGGTGTAGTAAATG
CAAACAGGGGTGGTGCCTAAAATTTCTTTCTGAAAACAGTTACTACCCTG
GTGTAGTAAATGCAAACAGGGGTGGTGCCTAAATTTTTTCGCTGAAAACA
GTTACTACTGACTACCCTGGTGTAGTAACTGCAATGGGTGGTGGTCCTAA
AAAAAGTGCTGAAAAGGCTCTTACTACACATACTGTCTTGTAGTAACTGC
GTGCTGATTTTTTGCACTAAGATGCGTATTAGCAATGCCCAAAACATGGC
CTATTCGGATTTTTGAGCAAATTTTTTTTTCCGGCCAAAAATGCCAGAAA
TATGCTGAAAATCGTCGTTTTTCAGATTTTTCACACAAAAACATTAAACC
CGAACTTTCTATTTTTTTCCCTACTCCCCTTTCCTCTCCCCCAATCAGCA
ATCAATGATAAAATTTAACGCATTATGCAATTTCGCTAAACGCCATATTT
TCTGACTGATGGTTTTCATTTTTCTCCTTATTGCTATATCTAATTTTCAT
CATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTGATAGTTTTTAAAGA
AAAGCGTTTGATAGCTTTTTTACTTTTTTTTCAAAAGTTTTTTTCAATAG
TGTTAAAAGTTTCTCCCAATAGATATGCTTTCATTATATTTTTTTATTTT
GTTCAGTTATGTCTTATGTGTTTCATTGTTTCAATTTTCATAGATTCGAA
AATAGGTTCGAAAATTTTCGAAAAATTAACAAGCGGGGGGGGGGGGGGGG
GGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTATCACTTGTTTT
GTATGCGTTTATACAAAAACTGTTTGGTTATCACACGGACGAATTTACCA
ATAGCTGAAAATATTTGGGTGGTGTCAAGTAGTTTTATGATAATTTCTTA
GTTCATCAGATTTGATTTTAGTGTCTTTTATGGAAGAACCCCAAAGTAAA
AGCTAATTTTAAAATATTTTTGTTACATTTTTCATTTTTCCCTTTGACTC
CCAAGTTAGTTTCTCCGAAAGTCAGTTCTTTTCGGCTGTTTTTTTTTAAT
TTTCTCCCGTCGCTTACCCAGTCCCCTAAAAGTCAACGTGGTCATATTTC
CATACTAGAGAAATATGAAATATCGCAAATATCTCCATGCTCTTGACCAA
TCAAAACGCTGACATTTTTTTGGGTCGGCAATAAGACGGTCTAGTGCATA
ACTGATTACTACAGCTTTCATTATGATACCCCCATACGTCAGTGGGTGCA
AGTAACTGAAGTAGAACAAGGGGAAAATTAGATATATTACCTAAAAATAA
GTTTTGTTCAAATTGGCATGTAACATTCTCCTAAATTAGCACGTGATAAG
GCTGCGAATAGTGCACAACGTGCTATAAAGTATAAGGTTTTTATTCTGTA
ATACGGATCATTTCCACCCTGACTGGCTGAGGTAATTTATTATGCGGAAC
TGAGTCAATAGGTCGTTGCAACTTTTCATAAAATTTTAGTACCATATAAA
AGTATTAATTTTGCAAGAATTGAGTTTTGTGTTGAAATAATCTGCATTTT
TGAGAAAAATAGTCCCAAGAAGACAAAATTTGTTCTTTATATTTGCCCAC
TAAGGATGGTCTTTATGTCAAAATTTATCAAACTATTTAAGAACCTGTGT
GTACCATAATACAACTTCTCTAAAATGGGTTATTTATGGCAAGCAAAAAG
TCAACAACGTTTTTGATACTTTTGTATGCCTTAGATTTTCTTACCAACCC
CCCTCCCCCACCCCTACTTAGGCTGGCCCCTATGCCAAAATACCATGATA
CAACTTCTCTAAAATGGGTTAGTGGCAAGCAAAAAGTCAACAACCTTTGA
TATTTTTGTATATATGCCTGGGATTTAGATACCAACGGTTAAGTTAAGAT
CTGGGTTAAATTAGGGTTTGAAAAAATGTAAATTAGGATATTTTTGTTAA
ATTGGAAATAGGGTTAAATTTCAAATTAAGGATTTCCTCTCTTCATAATA
AAAGAACAGGTTAATAGTAAAGTGATTTGTCGTAGATTAAAATGTTTTTA
ACATAATAAATTAATAAATGTTTTTAATGATTATGTTACAATAATTCAGA
TTGAAAATAAATTTGCAATAAAAATGGTATTGAGTGAAGTCACAAAATCT
GTGTGTCACGTGGAACGAAACTTAAAATGTTTGAAAGACATGCCAAGGAT
TTCAGTTCAAAACATTCGTGATTTTCGTGGTGCCTTCAAAAAGGTATGTA
TGTACACGCCAAATGATATTAGCGAGTTTATGTATCTGCACTTTTGAGAA
CGGTAGAGTAACTGAAGCGATTTGGAAAAACCCGCATTTCTGACCCGCAT
TATCGAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGCAAGG
ATCTAGTCAAATTAGAACCTTACCGTCTCCGTCGTTGAAAAACACACATA
CATAAACTCGGTATTGTGGAGTGTCTGTGTTTATAATACACATGGTGTCT
AAGACCAGCAGGACACTCTACATGCTGTACCTGCTAGTTCTAGAAAAATT
AGCTTGAAATCTTCCCCAATGGGAGAACTATTTCCCATTGCAAATAAACC
AAACAGTACTCTCAAAATTTTTAACTCGTTCTGGTTCCTCAAATGGCTAA
AGATTTTGTCATTGAAACAGGGGTGTATATAATGATAGTGTTTTCAGATT
TTATATGTAAATAAATAATTTCTACTTTAGAATCTTTGATATACATATTT
AATGAAATAAAGCGTCAGAAAATAAAGAGTCAAGATAATCTTGCAAAAAG
ATTTTTGTAGCTAGAATACTCAATAAGCAAACTCTATATTTATCTAATTC
TACTAACAATTCTTCGTAGAAACAACGTGTTGGGCGTGGTCCTGGTTCAG
GGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAGGT
ACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGATT
GGTACCAAAACATGGTTTCACTAATGCCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049601-exon-scaffold_161-1575043694:123641..123667 | TCONS_00049601-exon-scaffold_161-1575043694:123641..123667 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1575043694:115375..115518 | TCONS_00049601-exon-scaffold_161-1575043694:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1575043694:114586..114748 | TCONS_00049601-exon-scaffold_161-1575043694:114586..114748 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1510915933:123641..123667 | TCONS_00049601-exon-scaffold_161-1510915933:123641..123667 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1510915933:115375..115518 | TCONS_00049601-exon-scaffold_161-1510915933:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1510915933:114586..114748 | TCONS_00049601-exon-scaffold_161-1510915933:114586..114748 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1491911889:123641..123667 | TCONS_00049601-exon-scaffold_161-1491911889:123641..123667 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1491911889:115375..115518 | TCONS_00049601-exon-scaffold_161-1491911889:115375..115518 | Clytia hemisphaerica | exon |
| TCONS_00049601-exon-scaffold_161-1491911889:114586..114748 | TCONS_00049601-exon-scaffold_161-1491911889:114586..114748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:114586..123667 - |
Blast
The following BLAST results are available for this feature:
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