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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049571 ID=TCONS_00049571|Name=TCONS_00049571|organism=Clytia hemisphaerica|type=transcript|length=828bp
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGTAACATCTCTGAACACTTATTCCTTCGAAT
TGCATTCTGAtcaaaaaattggtgaaaagaTCATTCGATGTCTCTTTATT
CGTCTGTCGGACGAAACTACCGGACAAACGCATGACTTCTCACAAAGATA
TTATCCACTTAGATTTGAGCAATTATATGGACCATAATTATGAAATTGAA
GTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAACCACG
TGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGCGGTC
GTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAACATC
ACAGACTGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGAAAAA
CCGAAGGGAAAATTTACTCTCAGAAATACACAAATTTCctatatacatgt
ttttttttatacaaaaatccgaaaacag Run BLAST on NCBI transcript from alignment at scaffold_161:136169..138600+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049571 ID=TCONS_00049571|Name=TCONS_00049571|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at scaffold_161:136169..138600+ (Clytia hemisphaerica)
AATTTGACGTGCCTAAGTGCTTGCGTACCCAAAGTTTTGACGTGACTCGA
ATTTCGATGTGCCCtcaaatttcgacgtgccctcgaaCTTTGACGTGTCC
TTGAATTTTGTATGTATGgatctttttcaaagattcgACTAGTTGAACGC
AAGCCGGGTGAAAGTTTACAAAATTTTGCGGTGGAACCAGGGTTGTACTA
GATATGtacaacttgttcttaacattttggccatcgaagccttatgttct
tatatagttaattcttatttaaaaaaaacgtgtaatcaagaaaaatttga
aagaagataCAAATCAAAGGGATGGATTGGCAGGTGTTTGGTATAATTTG
GTTCAGTTTGCTAACGATGGGTGAGTACCTTAACGCAAAacggatttttc
attttttttcgggattttcTAATTCTTGtcatgaaaaaaggaaaattatt
aaatatcTTCATTAAGTATCTTTGCGGGGAAATCACTCAGTTATTTCAAT
TCAACCTCGTATTTGATATCGTTTATATCTTTTTTCACCATAGTAACATC
TCTGAACACTTATTCCTTCGAATTGCATTCTGAtcaaaaaattggtgaaa
agaTCATTCGATGTCTCTTTATTCGTCTGTCGGACGAAACTACCGGACAA
ACGCATGACTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTT
TGCTCTATATGGCATCAAATTCgaaaggtattttttttttaaaattaccT
GACTATGGCCCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAA
AACTTTGTCAGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAAC
TAAATTTCTAcgagaaaaaactatataagaacacaaggctacGATAGCTA
AAATATTAAGGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGT
TCTGGAATCcgtttcagaattttcaaagtAAGCTAttcttatattgttgt
ttcttttaaactagtgttttttttctaaaataagcACCGcggtttaaatt
tatttttcgctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGA
CCCATTTTTATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcac
attttcctttaaaatattTGCAGAGATTTGAGCAATTATATGGACCATAA
TTATGAAATTGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATG
GCGGACAACCANaattttttttcggacactttggtgtgattttcggacaa
atatgacggtctcaggcaaaaatcatagggttaaaaattaatgaaaattt
tagctcgagaaaaaaagacctgttgtatatttttggaaagctctcaaaaa
attaagattagagatatattgcaagtatagttGATTTCTGTACcttactc
gagatattaacccttgaaaaccgtttttttcagccagaaacagctatttt
gtccagtttttgcgctttttgaagctcaatatctcgagttaggtactgaa
atcacctatacttgcaatatatctctaatccNTACCGGACAAACACATGA
CTTCTCACAAAGATATTATCCACTTGTACGTGAATATGATTTTGCTCTAT
ATGGCATCAAATTCgaaaggtattttttttttaaattacctgACTGTGGC
CCTAAACAAGGGAAAGTCCACCGTCACGTATCGGTTAATAAAACTTTGTC
AGTGAAATGCTGCAATATTTCGTTTGTTCACGTTGAAAAACTAAATTTCT
AcgagaaaaaactatataagaacacaaggctacGATAGCTAAAATATTAA
GGACAAGCTAAGGATTTATGAACTCTAAAATTCTGTTCTGTTCTGGAATC
cgtttcagaattttcaaagtAAGCTAttcttatattgttgtttcttttaa
actagtgttttttttctaaaataagcACCGcggtttaaatttatttttcg
ctATTTAGGGGAGGCGCTCATTTCGAAATATTGAGTTTTGACCCATTTTT
ATCTTATTTGAAGGTTTTCCAACAAAGTACAATTTAACcacattttcctt
taaaatattTGCAGAGATTTGAGCAATTATATGGACCATAATTATGAAAT
TGAAGTGATCGTCAATCATGACTGGTGTAGTTTTGAAAATGGCGGACAAC
CACGTGCCCGGACAGGTGATTTGAAAGGAACAAACCTTAAACGAATCAGC
GGTCGTGAATTTTATTATACGATGACTGTTGATATTAAAGCTGTTGTTAA
CATCACAGACTGATTTTTTGCGTCCCAAGAACTCTTTTGAAAAGTTCGGA
AAAACCGAAGGGAAAATTTACTCTCAGAAATACACAAATTTCctatatac
atgtttttttttatacaaaaatccgaaaacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049571-exon-scaffold_161-1491911889:136169..136538 | TCONS_00049571-exon-scaffold_161-1491911889:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1510915933:136169..136538 | TCONS_00049571-exon-scaffold_161-1510915933:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1575043694:136169..136538 | TCONS_00049571-exon-scaffold_161-1575043694:136169..136538 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1491911889:136712..136851 | TCONS_00049571-exon-scaffold_161-1491911889:136712..136851 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1510915933:136712..136851 | TCONS_00049571-exon-scaffold_161-1510915933:136712..136851 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1575043694:136712..136851 | TCONS_00049571-exon-scaffold_161-1575043694:136712..136851 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1491911889:138283..138600 | TCONS_00049571-exon-scaffold_161-1491911889:138283..138600 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1510915933:138283..138600 | TCONS_00049571-exon-scaffold_161-1510915933:138283..138600 | Clytia hemisphaerica | exon |
| TCONS_00049571-exon-scaffold_161-1575043694:138283..138600 | TCONS_00049571-exon-scaffold_161-1575043694:138283..138600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_161 | supercontig | scaffold_161:136169..138600 + |
Blast
The following BLAST results are available for this feature:
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