TCONS_00049560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049560
Unique NameTCONS_00049560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049560 ID=TCONS_00049560|Name=TCONS_00049560|organism=Clytia hemisphaerica|type=transcript|length=316bp
CCGCCAAGAAGCCTGAGCACGAACGTGCGAATGAGAATGCGGGCGAAACG
AGTGCACAGCTGAGAAGACCATGAAACCAGGGCACGAACGTGCAATGCAA
ATGGAAAATGAAGGCCAGAAAATGAACTGAACTGagccaaaatgaaaaca
aggcAAGCCCAATGGAAAGGAAAAGGACTAAACGAGCCAGAGAGCCTGAG
CACGAACGTGCGTGAGTGCAATgaaagtccaatgaaatgaataaagtaaa
tgaaaatctaagttttgaataaatgtttttgtaaattttctgaatttata
AATGTCAAGTAACTAG
Run BLAST on NCBI

transcript from alignment at scaffold_160:256944..257259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049560 ID=TCONS_00049560|Name=TCONS_00049560|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_160:256944..257259 (Clytia hemisphaerica)
CTAGTTACTTGACATTtataaattcagaaaatttacaaaaacatttattc
aaaacttagattttcatttactttattcatttcattggactttcATTGCA
CTCACGCACGTTCGTGCTCAGGCTCTCTGGCTCGTTTAGTCCTTTTCCTT
TCCATTGGGCTTgccttgttttcattttggctCAGTTCAGTTCATTTTCT
GGCCTTCATTTTCCATTTGCATTGCACGTTCGTGCCCTGGTTTCATGGTC
TTCTCAGCTGTGCACTCGTTTCGCCCGCATTCTCATTCGCACGTTCGTGC
TCAGGCTTCTTGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031431XLOC_031431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049560-exon-scaffold_160-1491911889:256944..257259TCONS_00049560-exon-scaffold_160-1491911889:256944..257259Clytia hemisphaericaexon
TCONS_00049560-exon-scaffold_160-1510915933:256944..257259TCONS_00049560-exon-scaffold_160-1510915933:256944..257259Clytia hemisphaericaexon
TCONS_00049560-exon-scaffold_160-1575043694:256944..257259TCONS_00049560-exon-scaffold_160-1575043694:256944..257259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:256944..257259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.98415	1.13946	2.89372	2.98701	0	2.27351	3.89869	3.66781	0.232433	4.04881	1.75193	1.87022	0.626937	0.61843	0.332542	0.60842	0	0.776033	1.16466	3.78837	0.59079	0	1.49283	1.17225	1.59395	0.523258	0	0	1.5627	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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